Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 0.0e+00 1379.8 730 100.0
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 0.0e+00 1083.2 733 80.6
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 2.1e-305 1052.0 739 77.7
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 1.7e-281 972.6 753 72.6
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 3.1e-272 941.8 753 70.0
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 4.1e-272 941.4 740 70.7
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 6.5e-270 934.1 754 70.7
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 7.2e-269 930.6 753 69.6
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 5.4e-256 887.9 740 67.0
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.2e-250 870.2 758 66.2
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 1.2e-247 860.1 712 68.4
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 1.8e-198 696.8 748 53.7
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 2.8e-188 662.9 753 52.1
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 8.2e-188 661.4 703 54.1
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 7.4e-173 611.7 687 51.7
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.1e-171 607.8 711 50.8
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.1e-171 607.8 687 51.7
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 5.3e-171 605.5 687 50.8
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 1.3e-169 600.9 717 50.3
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 6.5e-169 598.6 683 51.1
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 6.5e-169 598.6 739 49.8
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 8.5e-169 598.2 767 49.0
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 2.7e-167 593.2 752 49.2
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 6.1e-167 592.0 752 49.1
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 2.8e-164 583.2 756 47.4
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 1.7e-161 573.9 751 48.2
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 5.0e-161 572.4 758 47.6
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 7.2e-160 568.5 334 91.3
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 6.1e-159 565.5 704 47.6
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 3.9e-158 562.8 694 49.4
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 1.5e-157 560.8 701 47.8
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 2.6e-157 560.1 741 46.7
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 1.8e-155 553.9 743 47.6
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 7.7e-154 548.5 755 47.3
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 5.0e-153 545.8 761 47.0
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 1.1e-152 544.7 657 49.8
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 2.2e-148 530.4 687 48.5
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 2.2e-148 530.4 714 45.1
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 4.8e-148 529.3 714 44.8
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 9.1e-147 525.0 714 44.8
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 9.1e-147 525.0 755 43.7
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 2.1e-143 513.8 747 43.6
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 3.6e-143 513.1 688 45.2
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 6.1e-143 512.3 742 43.3
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 3.0e-142 510.0 683 44.8
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 4.7e-135 486.1 772 43.0
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 4.0e-134 483.0 718 44.6
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 9.8e-133 478.4 705 44.4
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.3e-129 468.0 716 41.8
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 6.6e-129 465.7 707 41.6
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 7.3e-128 462.2 713 41.2
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 1.8e-126 457.6 717 41.6
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 1.5e-125 454.5 743 40.1
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 4.4e-125 453.0 743 40.5
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 4.4e-125 453.0 743 40.5
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.7e-124 451.1 692 42.9
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 4.1e-123 446.4 716 41.8
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 1.2e-122 444.9 742 41.1
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 2.0e-122 444.1 722 41.1
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 6.0e-122 442.6 687 43.8
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 1.9e-120 437.6 709 41.0
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 3.6e-119 433.3 717 41.1
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 1.1e-118 431.8 716 39.5
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 1.7e-116 424.5 692 42.6
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 4.9e-116 422.9 744 39.1
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 9.2e-115 418.7 729 39.2
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 3.5e-114 416.8 679 42.0
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 1.0e-113 415.2 728 39.4
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 1.3e-113 414.8 700 40.9
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 1.3e-113 414.8 779 39.2
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 1.3e-113 414.8 717 39.6
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 5.2e-110 402.9 749 40.1
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 1.9e-107 394.4 587 42.2
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 5.1e-105 386.3 710 39.2
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 6.6e-97 359.4 307 64.2
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 7.6e-93 345.9 727 37.1
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 2.9e-92 344.0 549 43.0
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 3.8e-92 343.6 419 50.4
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 9.3e-91 339.0 738 35.9
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 4.6e-82 310.1 387 50.1
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 7.4e-80 302.8 241 65.6
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 3.1e-78 297.4 608 37.7
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 1.5e-77 295.0 338 51.2
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 4.5e-77 293.5 536 38.8
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 2.2e-76 291.2 266 58.6
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 3.0e-65 254.2 209 67.9
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 6.3e-55 219.9 312 43.9
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 2.5e-51 208.0 451 36.1
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.6e-40 171.4 157 61.1
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 2.8e-39 167.9 158 57.0
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 3.1e-30 137.9 322 36.6
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 1.6e-29 135.6 97 67.0
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 2.1e-26 125.2 187 43.3
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 2.2e-15 88.6 83 50.6
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 3.7e-15 87.8 77 55.8
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 2.0e-08 65.5 231 27.7
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 5.8e-08 63.9 157 33.1
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 1.1e-06 59.7 69 49.3
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 7.0e-06 57.0 165 27.3


User provided reference genes

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