Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.3e-182 642.9 323 100.0
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 6.4e-153 544.3 335 82.7
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 2.3e-150 535.8 324 83.6
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 2.5e-141 505.8 334 76.9
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.4e-136 490.0 318 78.0
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 1.3e-134 483.4 325 75.7
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.8e-134 483.0 325 75.7
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 6.3e-132 474.6 327 74.3
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 9.0e-131 470.7 320 74.4
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 2.5e-128 462.6 327 72.2
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 2.5e-128 462.6 327 72.8
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 3.7e-92 342.4 331 54.4
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 1.0e-89 334.3 336 54.2
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.7e-89 333.6 327 52.6
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 1.7e-89 333.6 323 56.7
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 2.9e-89 332.8 321 56.1
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 3.8e-89 332.4 335 54.6
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 1.5e-88 330.5 339 52.8
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 5.5e-88 328.6 331 53.5
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 9.5e-88 327.8 321 52.6
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.2e-87 327.4 333 54.1
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 8.0e-87 324.7 327 54.4
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.0e-86 324.3 311 55.6
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.3e-86 323.2 335 53.1
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 5.2e-86 322.0 317 53.0
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 6.8e-86 321.6 327 52.9
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 8.9e-86 321.2 329 52.3
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 1.2e-85 320.9 326 50.6
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 2.6e-85 319.7 291 56.7
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 2.6e-85 319.7 333 53.2
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.7e-84 317.0 334 50.6
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.2e-84 316.6 336 51.5
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 2.2e-84 316.6 322 52.5
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 6.3e-84 315.1 333 51.4
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.3e-84 314.7 332 51.2
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.4e-83 313.9 328 51.5
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.4e-83 313.2 326 51.2
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.1e-83 312.8 329 51.7
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 5.4e-83 312.0 328 51.5
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-82 310.8 326 50.9
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.2e-82 310.8 332 51.2
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-82 310.5 328 51.2
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.0e-82 310.1 330 50.6
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 2.7e-82 309.7 331 50.5
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.5e-82 309.3 321 52.0
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 5.9e-82 308.5 327 51.4
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 6.6e-81 305.1 332 48.8
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.5e-80 303.1 329 47.7
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.3e-80 302.8 316 50.9
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 9.5e-80 301.2 332 50.3
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.6e-79 300.4 328 50.6
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-79 300.4 316 50.9
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.6e-79 300.4 339 47.2
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 4.7e-79 298.9 335 48.4
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.7e-79 298.9 313 52.7
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 6.1e-79 298.5 345 48.7
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.1e-79 298.5 352 48.3
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 6.1e-79 298.5 332 48.8
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.0e-79 298.1 333 47.1
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 1.0e-78 297.7 325 50.5
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.8e-78 297.0 333 49.2
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 1.8e-78 297.0 318 50.9
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.8e-78 297.0 350 48.3
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.8e-78 297.0 256 56.2
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 2.3e-78 296.6 318 49.4
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 3.0e-78 296.2 336 47.9
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 6.8e-78 295.0 319 50.5
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 2.0e-77 293.5 332 47.3
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 5.7e-77 292.0 325 50.5
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 9.8e-77 291.2 330 50.0
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.3e-76 290.8 325 48.0
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 1.3e-76 290.8 325 48.3
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 1.7e-76 290.4 325 48.0
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 4.9e-76 288.9 329 47.4
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 4.9e-76 288.9 332 49.4
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 6.4e-76 288.5 331 47.4
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 1.1e-75 287.7 289 51.2
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.4e-75 287.3 289 52.9
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.8e-75 287.0 334 46.7
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.8e-75 287.0 329 45.6
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.4e-75 286.6 331 48.9
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 2.4e-75 286.6 296 51.7
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 3.2e-75 286.2 334 45.8
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.1e-75 285.8 334 46.4
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 5.4e-75 285.4 328 46.6
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.4e-75 285.4 331 48.9
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.2e-74 284.3 334 45.5
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 2.0e-74 283.5 269 50.2
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 2.7e-74 283.1 324 47.2
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 6.0e-74 282.0 268 50.4
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 6.0e-74 282.0 304 49.3
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 7.8e-74 281.6 269 50.2
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 7.8e-74 281.6 321 47.0
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 1.0e-73 281.2 326 46.9
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 1.0e-73 281.2 284 51.4
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 1.7e-73 280.4 325 45.2
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 2.3e-73 280.0 324 47.8
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 2.3e-73 280.0 247 55.1
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 3.0e-73 279.6 328 44.8
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 3.0e-73 279.6 258 50.8
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 3.9e-73 279.3 324 47.5
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 3.9e-73 279.3 328 44.8
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.0e-73 278.9 278 50.0
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 5.0e-73 278.9 284 50.7
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 6.6e-73 278.5 323 47.4
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 8.6e-73 278.1 270 48.9
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 1.5e-72 277.3 322 45.7
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-72 277.3 295 50.8
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.9e-72 276.9 324 46.0
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 5.6e-72 275.4 324 43.8
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 5.6e-72 275.4 324 43.8
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 7.3e-72 275.0 289 49.1
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 7.3e-72 275.0 258 53.9
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 9.5e-72 274.6 324 44.8
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 9.5e-72 274.6 284 49.6
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.6e-71 273.9 270 48.5
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 1.6e-71 273.9 335 45.1
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.6e-71 273.9 280 51.1
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 2.1e-71 273.5 286 47.2
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 2.8e-71 273.1 287 47.0
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 6.2e-71 271.9 306 49.0
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.1e-70 271.2 317 45.7
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 1.1e-70 271.2 286 47.9
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 1.4e-70 270.8 324 43.8
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 1.8e-70 270.4 282 48.2
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.8e-70 270.4 276 48.9
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 1.8e-70 270.4 324 44.4
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.1e-70 269.6 327 44.6
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 6.8e-70 268.5 257 50.6
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 8.9e-70 268.1 259 51.0
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 2.0e-69 266.9 331 43.5
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 2.6e-69 266.5 286 46.9
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 1.3e-68 264.2 281 48.8
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 1.3e-68 264.2 279 48.4
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 3.7e-68 262.7 282 48.2
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 4.9e-68 262.3 269 50.9
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 1.1e-67 261.2 266 51.1
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 1.1e-67 261.2 266 51.1
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 3.2e-67 259.6 270 51.1
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 3.5e-66 256.1 253 52.6
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 4.6e-66 255.8 283 47.7
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.3e-65 254.2 262 49.2
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 7.3e-64 248.4 298 45.6
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 2.8e-63 246.5 261 49.0
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 1.4e-62 244.2 246 50.0
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 2.2e-60 236.9 262 46.6
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 9.2e-59 231.5 284 46.1
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 1.3e-57 227.6 359 40.4
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.1e-56 224.6 281 42.0
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 9.5e-56 221.5 157 65.0
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 5.2e-54 215.7 244 49.2
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 4.4e-53 212.6 263 43.3
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 1.9e-51 207.2 159 59.1
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 3.9e-49 199.5 240 45.4
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 6.2e-47 192.2 242 43.0
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 9.0e-46 188.3 180 47.8
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 1.4e-43 181.0 224 43.8
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.6e-42 177.6 150 55.3
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 2.1e-42 177.2 118 75.4
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.1e-40 171.4 153 54.2
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.8e-39 166.8 184 43.5
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.1e-38 163.3 243 40.3
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 3.4e-37 159.8 218 43.6
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 4.5e-37 159.5 102 79.4
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 5.4e-35 152.5 258 36.8
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.6e-31 141.0 280 37.1
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 9.0e-30 135.2 224 36.6
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.6e-29 133.7 166 43.4
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 9.3e-27 125.2 88 67.0
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.0e-25 121.7 77 71.4
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 1.9e-24 117.5 96 62.5
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 3.1e-22 110.2 82 61.0
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 3.0e-17 93.6 79 57.0
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.7e-12 77.8 81 43.2
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 5.3e-06 56.2 51 51.0


User provided reference genes

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