Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.6e-278 961.4 489 100.0
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 1.3e-165 587.0 331 89.1
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 4.1e-159 565.5 324 88.9
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 1.5e-156 557.0 324 87.0
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 1.4e-154 550.4 324 86.4
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 4.0e-154 548.9 324 85.2
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 1.8e-151 540.0 325 84.9
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 2.9e-149 532.7 323 80.5
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 1.1e-148 530.8 324 83.0
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.6e-147 526.9 323 80.5
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 4.8e-144 515.4 323 79.3
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 1.6e-142 510.4 324 79.3
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 5.9e-142 508.4 323 78.3
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 4.7e-139 498.8 325 76.6
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 1.4e-138 497.3 321 76.9
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 5.2e-138 495.4 323 76.8
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 2.6e-137 493.0 321 76.9
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 8.3e-136 488.0 321 76.0
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 9.2e-135 484.6 324 75.6
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 4.5e-134 482.3 326 75.5
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 7.7e-134 481.5 322 75.5
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 7.7e-134 481.5 325 75.7
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 8.6e-133 478.0 322 75.2
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 1.0e-130 471.1 325 73.5
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 2.3e-130 469.9 324 72.8
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 3.0e-130 469.5 330 73.3
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 3.0e-130 469.5 324 72.8
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 3.0e-130 469.5 324 72.5
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 5.2e-130 468.8 324 72.8
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 8.9e-130 468.0 323 73.1
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 2.0e-129 466.8 324 74.1
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 3.4e-129 466.1 326 72.7
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 4.4e-129 465.7 321 73.2
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 7.5e-129 464.9 322 72.7
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 7.5e-129 464.9 328 71.6
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 9.8e-129 464.5 321 72.0
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 1.3e-128 464.2 323 72.4
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 6.4e-128 461.8 329 70.2
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 6.4e-128 461.8 325 71.4
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 8.3e-128 461.5 324 72.2
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 1.1e-127 461.1 325 73.8
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 3.2e-127 459.5 362 66.0
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 4.1e-127 459.1 322 73.6
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 4.1e-127 459.1 324 71.9
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 7.0e-127 458.4 324 72.8
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 7.0e-127 458.4 322 72.0
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 1.2e-126 457.6 354 69.2
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 1.2e-126 457.6 326 71.8
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 1.2e-126 457.6 334 71.3
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.6e-126 457.2 324 72.5
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 1.0e-125 454.5 323 74.6
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 1.7e-125 453.8 318 72.0
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 6.6e-125 451.8 324 69.4
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 6.6e-125 451.8 328 71.6
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 8.6e-125 451.4 325 70.2
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 1.5e-124 450.7 322 69.9
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 1.5e-124 450.7 322 70.5
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.5e-124 449.9 326 72.7
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 2.5e-124 449.9 327 72.5
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.3e-124 449.5 327 70.3
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 4.3e-124 449.1 326 72.4
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 4.3e-124 449.1 325 72.0
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 5.6e-124 448.7 326 71.8
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 9.5e-124 448.0 354 68.4
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 9.5e-124 448.0 322 68.6
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 2.8e-123 446.4 323 70.0
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 6.2e-123 445.3 326 72.1
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 1.4e-122 444.1 326 68.7
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.8e-122 443.7 326 71.8
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 2.3e-122 443.4 281 76.9
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 4.0e-122 442.6 326 69.0
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 5.2e-122 442.2 325 68.6
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 5.2e-122 442.2 330 68.8
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 6.8e-122 441.8 329 70.5
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 8.9e-122 441.4 325 68.0
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 8.9e-122 441.4 327 71.6
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 8.9e-122 441.4 325 69.5
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 1.5e-121 440.7 324 73.5
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 2.6e-121 439.9 323 73.1
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 4.4e-121 439.1 322 67.7
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.3e-120 437.6 326 69.6
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.3e-120 437.6 326 69.6
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 4.9e-120 435.6 329 70.2
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 1.4e-119 434.1 318 71.7
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 3.2e-119 433.0 327 68.2
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 5.4e-119 432.2 316 70.9
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 1.2e-118 431.0 328 68.3
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 2.0e-118 430.3 328 67.7
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 3.5e-118 429.5 325 67.4
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 3.5e-118 429.5 322 68.6
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.0e-117 427.9 325 67.1
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.7e-117 427.2 329 67.2
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.7e-117 427.2 326 68.1
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 2.3e-117 426.8 329 68.1
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 8.6e-117 424.9 322 66.5
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 1.1e-116 424.5 323 68.1
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 7.3e-116 421.8 330 68.5
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 1.5e-113 414.1 499 49.9
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 4.4e-113 412.5 325 66.5
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 5.1e-109 399.1 324 66.4
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 5.1e-109 399.1 331 63.7
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 1.1e-106 391.3 265 72.5
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 1.4e-106 391.0 288 68.8
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 1.8e-106 390.6 266 71.4
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 3.1e-106 389.8 385 55.8
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 4.9e-104 382.5 324 62.7
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 3.2e-103 379.8 265 72.8
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 1.1e-95 354.8 185 96.2
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 7.6e-89 332.0 184 91.8
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 2.2e-88 330.5 178 92.1
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 8.7e-85 318.5 190 83.2
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.4e-82 311.2 184 88.6
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 3.1e-82 310.1 274 56.6
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 5.3e-82 309.3 259 58.3
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 9.0e-82 308.5 208 75.0
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.3e-80 304.7 178 84.3
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 6.4e-80 302.4 168 88.7
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 1.5e-76 291.2 170 84.1
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 1.1e-68 265.0 204 66.2
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 6.1e-54 216.1 121 87.6
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.3e-51 208.4 158 64.6
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 7.2e-47 192.6 132 73.5
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 2.1e-46 191.0 124 71.8
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.9e-45 186.8 121 76.0
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.5e-41 173.7 115 73.9
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.5e-36 158.3 153 58.2
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 5.7e-36 156.4 121 69.4
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.2e-33 148.7 95 78.9
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 3.6e-22 110.5 72 73.6
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 8.6e-16 89.4 130 43.8
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 3.0e-13 80.9 158 36.1
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 7.5e-12 76.3 50 74.0
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 3.2e-10 70.9 185 27.0
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.6e-09 68.6 139 35.3
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 1.1e-07 62.4 173 31.8
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 1.1e-07 62.4 142 32.4
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.9e-07 61.6 142 31.0
Pp3c12_8840 Physcomitrium patens HOM05D005825 ORTHO05D006483 2.1e-06 58.2 185 29.7
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 2.8e-06 57.8 52 63.5
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 3.6e-06 57.4 153 30.7
Ca_12098_v3 Cicer arietinum L. HOM05D018217 ORTHO05D006483 8.0e-06 56.2 30 83.3


User provided reference genes

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