Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 2.5e-65 251.9 122 100.0
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 1.5e-49 199.5 131 77.9
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 1.2e-48 196.4 131 77.1
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 1.2e-48 196.4 131 77.1
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 3.6e-48 194.9 131 74.8
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 4.7e-48 194.5 131 77.1
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 4.7e-48 194.5 131 76.3
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 6.2e-48 194.1 127 78.0
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 4.0e-47 191.4 131 75.6
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 5.2e-47 191.0 131 75.6
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 6.8e-47 190.7 131 74.8
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 6.8e-47 190.7 132 74.2
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.6e-46 188.7 131 73.3
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 2.6e-46 188.7 131 74.8
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 2.6e-46 188.7 131 74.0
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 3.4e-46 188.3 136 72.8
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 3.4e-46 188.3 131 74.8
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.4e-46 188.3 131 74.8
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.4e-46 188.3 131 74.0
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 4.4e-46 188.0 131 74.8
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 4.4e-46 188.0 131 74.0
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.4e-46 188.0 131 74.8
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 5.8e-46 187.6 131 73.3
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 5.8e-46 187.6 131 73.3
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 7.5e-46 187.2 131 74.0
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 1.7e-45 186.0 130 75.4
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 1.7e-45 186.0 131 73.3
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 2.9e-45 185.3 131 71.8
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 2.9e-45 185.3 131 74.0
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 2.9e-45 185.3 131 74.0
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 2.9e-45 185.3 131 72.5
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 3.7e-45 184.9 131 74.0
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 3.7e-45 184.9 131 74.0
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 3.7e-45 184.9 131 73.3
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 3.7e-45 184.9 130 73.8
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 6.4e-45 184.1 131 74.0
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 6.4e-45 184.1 131 72.5
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 6.4e-45 184.1 130 73.1
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 8.3e-45 183.7 131 73.3
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 1.1e-44 183.3 131 71.8
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.1e-44 183.3 127 74.8
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 1.4e-44 183.0 131 72.5
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.4e-44 183.0 131 73.3
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 1.9e-44 182.6 127 75.6
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 2.4e-44 182.2 131 71.0
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 2.4e-44 182.2 131 72.5
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 2.4e-44 182.2 131 71.0
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 3.2e-44 181.8 131 70.2
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 3.2e-44 181.8 131 70.2
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 4.1e-44 181.4 131 74.0
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 5.4e-44 181.0 131 72.5
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-43 179.9 114 79.8
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 1.6e-43 179.5 131 71.0
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 3.5e-43 178.3 131 69.5
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 4.6e-43 177.9 129 72.1
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 4.6e-43 177.9 128 72.7
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 4.6e-43 177.9 131 71.8
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 6.0e-43 177.6 131 70.2
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 6.0e-43 177.6 131 71.0
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 6.0e-43 177.6 131 71.8
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 7.8e-43 177.2 131 69.5
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 7.8e-43 177.2 131 69.5
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.0e-42 176.8 131 70.2
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 1.0e-42 176.8 131 69.5
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 1.0e-42 176.8 131 69.5
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 1.0e-42 176.8 131 71.0
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 1.3e-42 176.4 131 69.5
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.7e-42 176.0 131 70.2
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 1.7e-42 176.0 130 70.0
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 1.7e-42 176.0 131 67.2
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 3.0e-42 175.3 130 70.8
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 3.0e-42 175.3 127 70.1
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 3.0e-42 175.3 119 74.8
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 3.9e-42 174.9 127 72.4
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 3.9e-42 174.9 127 72.4
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 5.1e-42 174.5 131 69.5
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 5.1e-42 174.5 131 68.7
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 5.1e-42 174.5 131 68.7
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 5.1e-42 174.5 128 69.5
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 5.1e-42 174.5 130 69.2
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 5.1e-42 174.5 131 69.5
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 8.6e-42 173.7 131 68.7
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 8.6e-42 173.7 131 70.2
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 8.6e-42 173.7 130 68.5
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 1.1e-41 173.3 130 69.2
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 1.5e-41 172.9 131 67.2
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 1.9e-41 172.6 93 89.2
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.9e-41 172.6 131 67.9
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 1.9e-41 172.6 130 67.7
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 1.9e-41 172.6 130 67.7
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 1.9e-41 172.6 130 67.7
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 1.9e-41 172.6 130 67.7
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 2.5e-41 172.2 130 68.5
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 2.5e-41 172.2 130 68.5
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 2.5e-41 172.2 130 68.5
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 2.5e-41 172.2 130 68.5
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 3.3e-41 171.8 131 67.9
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 4.3e-41 171.4 131 68.7
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 4.3e-41 171.4 127 71.7
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 5.6e-41 171.0 130 67.7
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 5.6e-41 171.0 131 68.7
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 5.6e-41 171.0 131 67.9
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 7.3e-41 170.6 131 67.9
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-40 169.9 100 85.0
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.2e-40 169.9 131 67.2
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 1.6e-40 169.5 131 70.2
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 1.6e-40 169.5 131 66.4
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.1e-40 169.1 131 64.1
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 2.1e-40 169.1 126 69.0
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 2.8e-40 168.7 130 68.5
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 2.8e-40 168.7 130 66.9
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 3.6e-40 168.3 133 63.2
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.7e-40 167.9 100 85.0
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.7e-40 167.9 131 63.4
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 1.8e-39 166.0 130 66.2
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 2.3e-39 165.6 131 66.4
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 5.2e-39 164.5 89 91.0
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 6.8e-39 164.1 131 66.4
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 6.8e-39 164.1 93 82.8
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-38 163.3 105 79.0
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.8e-38 161.0 97 83.5
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 1.3e-37 159.8 92 85.9
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.9e-37 158.7 95 82.1
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.1e-36 156.8 91 87.9
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 1.1e-36 156.8 129 62.8
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.4e-36 156.4 89 88.8
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 4.1e-36 154.8 117 70.9
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 4.1e-36 154.8 91 82.4
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 5.4e-36 154.5 128 62.5
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 3.9e-34 148.3 100 71.0
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 8.6e-34 147.1 107 68.2
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.9e-33 146.0 126 59.5
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 3.1e-31 138.7 72 93.1
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 2.6e-30 135.6 131 55.0
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 3.4e-30 135.2 131 55.7
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 2.2e-29 132.5 92 66.3
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 6.4e-29 131.0 133 51.9
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.1e-28 130.2 70 90.0
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 4.8e-24 114.8 110 58.2
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 2.1e-19 99.4 88 63.6
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 2.3e-18 95.9 91 54.9
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 6.6e-18 94.4 80 63.8
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 5.3e-15 84.7 72 61.1
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 1.8e-10 69.7 127 32.3
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 1.3e-08 63.5 67 49.3
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 5.8e-06 54.7 89 39.3


User provided reference genes

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