Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 2.6e-175 618.6 308 100.0
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 2.7e-169 598.6 308 95.8
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 3.3e-167 591.7 308 94.5
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 2.4e-165 585.5 308 93.2
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 9.4e-162 573.5 308 91.6
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.2e-161 573.2 308 91.2
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.4e-160 569.7 308 90.6
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 2.8e-158 562.0 308 89.6
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 4.8e-158 561.2 300 89.7
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 3.1e-157 558.5 308 89.0
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 4.1e-157 558.1 308 88.6
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 5.0e-147 524.6 308 83.1
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.5e-146 523.1 297 84.2
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 2.5e-146 522.3 307 82.4
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.6e-145 518.5 308 82.1
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 6.1e-145 517.7 296 84.1
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 1.4e-144 516.5 308 80.2
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 1.4e-144 516.5 297 83.2
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 6.8e-144 514.2 308 81.5
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.2e-143 513.5 299 82.6
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 1.5e-143 513.1 307 81.4
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.6e-143 512.3 297 82.2
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 2.6e-143 512.3 308 79.9
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 2.6e-143 512.3 299 82.6
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.4e-143 511.9 308 82.1
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 4.4e-143 511.5 298 82.2
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 5.8e-143 511.1 297 81.8
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 7.5e-143 510.8 308 80.2
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.5e-143 510.8 298 82.2
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.5e-143 510.8 297 82.2
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.7e-142 509.6 308 79.5
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 4.9e-142 508.1 295 81.7
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 6.4e-142 507.7 309 80.9
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 1.1e-141 506.9 305 82.0
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.4e-141 506.5 296 80.7
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 1.4e-141 506.5 298 80.5
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 1.8e-141 506.1 296 82.1
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 2.4e-141 505.8 307 80.5
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 3.2e-141 505.4 309 79.9
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 5.4e-141 504.6 305 79.3
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 7.0e-141 504.2 308 79.9
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 1.6e-140 503.1 295 81.0
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 1.6e-140 503.1 309 79.6
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 2.7e-140 502.3 305 78.7
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 6.0e-140 501.1 303 80.2
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.3e-139 500.0 308 79.9
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 3.0e-139 498.8 297 81.1
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 3.0e-139 498.8 294 80.3
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 3.9e-139 498.4 293 81.6
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 3.9e-139 498.4 305 80.0
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 1.1e-138 496.9 308 78.2
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.5e-138 496.5 297 80.1
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 2.5e-138 495.7 307 79.2
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 3.3e-138 495.4 308 77.9
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 3.3e-138 495.4 308 77.9
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 3.3e-138 495.4 308 77.9
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 3.3e-138 495.4 301 81.1
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 5.6e-138 494.6 308 77.9
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.2e-137 493.4 297 80.1
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 1.2e-137 493.4 292 80.1
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.6e-137 493.0 308 77.6
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.6e-137 493.0 322 76.4
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 2.1e-137 492.7 297 80.5
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 3.6e-137 491.9 293 78.8
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 3.6e-137 491.9 297 80.8
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 4.7e-137 491.5 290 81.0
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 3.1e-136 488.8 308 76.9
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 3.1e-136 488.8 385 66.5
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 4.0e-136 488.4 319 75.5
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 5.2e-136 488.0 309 77.3
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 5.2e-136 488.0 292 80.1
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 5.2e-136 488.0 309 77.3
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 6.8e-136 487.6 308 77.6
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 8.9e-136 487.3 309 77.3
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 1.5e-135 486.5 291 80.1
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 4.4e-135 485.0 292 79.8
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 7.5e-135 484.2 305 76.4
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 9.8e-135 483.8 270 85.6
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 2.2e-134 482.6 295 76.6
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.2e-134 482.6 310 75.2
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.2e-134 482.6 310 75.2
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.4e-133 479.9 293 77.5
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 5.4e-133 478.0 345 69.0
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 9.2e-133 477.2 283 79.9
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 1.2e-132 476.9 288 78.1
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 2.0e-132 476.1 299 77.9
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 4.6e-132 474.9 296 78.7
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 4.6e-132 474.9 292 79.1
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.3e-131 473.4 292 79.1
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 1.1e-130 470.3 293 76.5
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 1.9e-130 469.5 288 77.8
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 1.9e-130 469.5 288 77.4
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 2.5e-130 469.2 305 76.4
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 2.5e-130 469.2 297 77.4
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 9.5e-130 467.2 287 79.1
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 1.8e-128 463.0 295 74.9
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 2.3e-128 462.6 294 77.6
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 3.1e-128 462.2 311 74.6
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 1.5e-127 459.9 272 81.2
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 1.3e-126 456.8 311 72.3
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 2.1e-124 449.5 308 73.1
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 7.8e-124 447.6 270 79.3
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.0e-123 447.2 272 78.3
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 1.1e-122 443.7 293 75.8
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 7.6e-119 431.0 325 69.2
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 9.2e-117 424.1 286 71.3
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.2e-116 423.7 300 72.3
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 9.6e-114 414.1 262 77.9
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 6.2e-113 411.4 287 70.4
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 6.9e-112 407.9 284 67.3
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 3.4e-111 405.6 272 71.7
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 1.7e-110 403.3 298 69.5
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.9e-109 399.8 250 78.8
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 2.4e-109 399.4 283 71.7
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.1e-104 382.5 232 79.3
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.7e-100 369.4 231 77.1
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 1.3e-97 360.5 218 79.4
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 1.4e-96 357.1 259 69.9
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 5.3e-96 355.1 308 60.4
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 1.3e-94 350.5 201 88.1
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 4.3e-90 335.5 228 72.8
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 7.4e-82 308.1 202 76.2
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 5.3e-64 248.8 139 84.2
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.5e-63 247.3 153 76.5
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 8.5e-62 241.5 265 51.3
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 9.7e-58 228.0 139 79.1
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 9.1e-56 221.5 151 72.8
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 7.7e-55 218.4 132 78.0
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.0e-54 218.0 108 90.7
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.0e-51 208.0 154 70.8
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 2.8e-49 199.9 108 83.3
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 2.0e-39 167.2 283 42.8
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 2.9e-38 163.3 129 58.1
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 4.2e-37 159.5 112 69.6
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 4.0e-35 152.9 310 34.5
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 2.4e-32 143.7 117 63.2
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 4.0e-27 126.3 165 46.7
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 1.4e-24 117.9 86 66.3
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 3.9e-22 109.8 287 30.3
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 3.3e-21 106.7 87 57.5
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.5e-18 97.8 71 64.8
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 1.7e-17 94.4 53 79.2
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 2.9e-17 93.6 52 82.7
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 2.9e-17 93.6 53 86.8
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 8.3e-17 92.0 79 54.4
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 1.4e-16 91.3 92 54.3
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.9e-16 90.9 93 54.8
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 2.1e-15 87.4 53 75.5
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 2.6e-10 70.5 37 78.4
arahy.Tifrunner.gnm1.ann1.8K4VEX Arachis hypogaea HOM05D000217 ORTHO05D000121 1.0e-06 58.5 42 76.2
arahy.Tifrunner.gnm1.ann1.XAPW6D Arachis hypogaea HOM05D000023 ORTHO05D009998 3.9e-06 56.6 35 77.1


User provided reference genes

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