Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21496_v3 Cicer arietinum L. HOM05D001246 ORTHO05D030885 1.3e-60 236.1 116 100.0
Ca_30358_v3 Cicer arietinum L. HOM05D001246 ORTHO05D030885 2.1e-21 105.9 51 100.0
Ca_09755_v3 Cicer arietinum L. HOM05D001246 ORTHO05D005436 2.0e-16 89.4 54 79.6
Psat6g060240 Pisum sativum HOM05D001246 ORTHO05D005436 1.5e-14 83.2 55 76.4
Phvul.007G172300 Phaseolus vulgaris HOM05D001246 ORTHO05D005436 2.5e-14 82.4 54 72.2
TPR.G40549 Trifolium pratense HOM05D001246 ORTHO05D005436 3.2e-14 82.0 54 72.2
Glyma.02G147100 Glycine max HOM05D001246 ORTHO05D005436 4.2e-14 81.6 54 72.2
VMungo0720G2994 Vigna mungo HOM05D001246 ORTHO05D005436 4.2e-14 81.6 54 70.4
Medtr1g072190 Medicago truncatula HOM05D001246 ORTHO05D005436 1.6e-13 79.7 56 71.4
Sabra05G0160200 Salix brachista HOM05D001246 ORTHO05D005436 3.6e-13 78.6 56 66.1
TWI59G1017 Tripterygium wilfordii HOM05D001246 ORTHO05D005436 3.6e-13 78.6 53 71.7
Potri.005G210100 Populus trichocarpa HOM05D001246 ORTHO05D005436 8.0e-13 77.4 56 64.3
Lalb_Chr02g0142761 Lupinus albus HOM05D001246 ORTHO05D005436 1.0e-12 77.0 54 66.7
Cfa006145 Carpinus fangiana HOM05D001246 ORTHO05D005436 1.4e-12 76.6 54 66.7
Ca_04669_v3 Cicer arietinum L. HOM05D000165 ORTHO05D001328 2.3e-12 75.9 63 58.7
Cpa.g.sc52.39 Carica papaya HOM05D001246 ORTHO05D005436 3.0e-12 75.5 54 66.7
Glyma.10G026800 Glycine max HOM05D001246 ORTHO05D005436 3.0e-12 75.5 54 66.7
Lalb_Chr06g0162981 Lupinus albus HOM05D001246 ORTHO05D005436 3.0e-12 75.5 54 66.7
Atru.chr5.1444 Acer truncatum HOM05D001246 ORTHO05D005436 4.0e-12 75.1 54 64.8
Potri.002G052600 Populus trichocarpa HOM05D001246 ORTHO05D005436 4.0e-12 75.1 56 62.5
THA.LOC104823046 Tarenaya hassleriana HOM05D001246 ORTHO05D005436 4.0e-12 75.1 54 64.8
BcaC02g10344 Brassica carinata HOM05D001246 ORTHO05D005436 5.2e-12 74.7 54 66.7
C04p30010 Brassica napus HOM05D001246 ORTHO05D005436 5.2e-12 74.7 54 66.7
BolC4t24534H Brassica oleracea HOM05D001246 ORTHO05D005436 5.2e-12 74.7 54 66.7
CARHR291740 Cardamine hirsuta HOM05D001246 ORTHO05D005436 5.2e-12 74.7 54 66.7
GSVIVG01001146001 Vitis vinifera HOM05D001246 ORTHO05D005436 5.2e-12 74.7 54 63.0
BcaB02g08076 Brassica carinata HOM05D001246 ORTHO05D005436 6.8e-12 74.3 54 64.8
CiPaw.08G105400 Carya illinoinensis HOM05D001246 ORTHO05D005436 8.8e-12 73.9 54 64.8
QL12p021694 Quercus lobata HOM05D001246 ORTHO05D005436 8.8e-12 73.9 54 64.8
TWI14G0447 Tripterygium wilfordii HOM05D001246 ORTHO05D005436 8.8e-12 73.9 52 67.3
Manes.05G076900 Manihot esculenta HOM05D001246 ORTHO05D005436 1.2e-11 73.6 54 63.0
A04p00210 Brassica napus HOM05D001246 ORTHO05D005436 1.5e-11 73.2 54 64.8
BraA04t15740Z Brassica rapa HOM05D001246 ORTHO05D005436 1.5e-11 73.2 54 64.8
Ciclev10020528m.g Citrus clementina HOM05D001246 ORTHO05D005436 1.5e-11 73.2 54 61.1
Prupe.8G240600 Prunus persica HOM05D001246 ORTHO05D005436 1.5e-11 73.2 54 63.0
FvH4_2g23520 Fragaria vesca HOM05D001246 ORTHO05D005436 2.0e-11 72.8 54 63.0
FAN15G0387 Fragaria x ananassa HOM05D001246 ORTHO05D005436 2.0e-11 72.8 54 63.0
FAN24G1059 Fragaria x ananassa HOM05D001246 ORTHO05D005436 2.0e-11 72.8 54 63.0
FAN27G3051 Fragaria x ananassa HOM05D001246 ORTHO05D005436 2.0e-11 72.8 54 63.0
Sabra02G0042700 Salix brachista HOM05D001246 ORTHO05D005436 2.0e-11 72.8 54 63.0
MD03G1264100 Malus domestica HOM05D001246 ORTHO05D005436 2.6e-11 72.4 54 63.0
Aa31LG10G17030 Aethionema arabicum HOM05D001246 ORTHO05D005436 3.4e-11 72.0 54 63.0
AL5G46050 Arabidopsis lyrata HOM05D001246 ORTHO05D005436 3.4e-11 72.0 54 64.8
Lj1g0002717 Lotus japonicus HOM05D001246 ORTHO05D005436 3.4e-11 72.0 54 64.8
COL.COLO4_09089 Corchorus olitorius HOM05D001246 ORTHO05D005436 4.4e-11 71.6 54 63.0
RcHm_v2.0_Chr6g0290991 Rosa chinensis HOM05D001246 ORTHO05D005436 4.4e-11 71.6 54 61.1
arahy.Tifrunner.gnm1.ann1.5U4S75 Arachis hypogaea HOM05D001246 ORTHO05D005436 5.7e-11 71.2 57 68.4
arahy.Tifrunner.gnm1.ann1.MNS73A Arachis hypogaea HOM05D001246 ORTHO05D005436 5.7e-11 71.2 57 68.4
FAN20G0917 Fragaria x ananassa HOM05D001246 ORTHO05D005436 5.7e-11 71.2 54 61.1
Manes.01G207400 Manihot esculenta HOM05D001246 ORTHO05D005436 5.7e-11 71.2 54 63.0
AT3G63200 Arabidopsis thaliana HOM05D001246 ORTHO05D005436 7.5e-11 70.9 54 63.0
Thecc.01G278700 Theobroma cacao HOM05D001246 ORTHO05D005436 7.5e-11 70.9 54 61.1
Lsat_1_v5_gn_9_3620 Lactuca sativa HOM05D001246 ORTHO05D005436 9.8e-11 70.5 54 57.4
PGR119G1337 Punica granatum HOM05D001246 ORTHO05D005436 9.8e-11 70.5 55 61.8
Rhsim13G0025300 Rhododendron simsii HOM05D001246 ORTHO05D005436 9.8e-11 70.5 54 63.0
Duzib138G0504 Durio zibethinus HOM05D001246 ORTHO05D005436 1.3e-10 70.1 54 61.1
Lj5g0011033 Lotus japonicus HOM05D001246 ORTHO05D005436 1.3e-10 70.1 57 64.9
Carub.0005s2987 Capsella rubella HOM05D001246 ORTHO05D005436 1.7e-10 69.7 54 61.1
Phvul.001G151400 Phaseolus vulgaris HOM05D001246 ORTHO05D005436 1.7e-10 69.7 54 63.0
TPR.G9926 Trifolium pratense HOM05D001246 ORTHO05D005436 1.7e-10 69.7 56 62.5
VMungo1383G3165 Vigna mungo HOM05D001246 ORTHO05D005436 1.7e-10 69.7 54 63.0
Medtr7g094940 Medicago truncatula HOM05D001246 ORTHO05D005436 2.2e-10 69.3 56 62.5
Medtr6g042660 Medicago truncatula HOM05D000165 ORTHO05D001328 2.8e-10 68.9 37 81.1
Sp5g00330 Schrenkiella parvula HOM05D001246 ORTHO05D005436 2.8e-10 68.9 43 74.4
Psat3g064440 Pisum sativum HOM05D001246 ORTHO05D005436 3.7e-10 68.6 56 62.5
Duzib133G1407 Durio zibethinus HOM05D001246 ORTHO05D005436 4.8e-10 68.2 54 59.3
Gohir.A12G004900 Gossypium hirsutum HOM05D001246 ORTHO05D005436 4.8e-10 68.2 67 49.3
Lsat_1_v5_gn_5_188060 Lactuca sativa HOM05D001246 ORTHO05D005436 4.8e-10 68.2 63 55.6
Actinidia09136 Actinidia chinensis HOM05D001246 ORTHO05D005436 6.3e-10 67.8 54 63.0
Actinidia21115 Actinidia chinensis HOM05D001246 ORTHO05D005436 6.3e-10 67.8 54 63.0
Lj2g0011913 Lotus japonicus HOM05D000165 ORTHO05D001328 6.3e-10 67.8 36 83.3
Dinv34757 Davidia involucrata HOM05D001246 ORTHO05D005436 8.3e-10 67.4 54 61.1
Glyma.03G154200 Glycine max HOM05D001246 ORTHO05D005436 8.3e-10 67.4 54 61.1
Gohir.A11G122900 Gossypium hirsutum HOM05D001246 ORTHO05D005436 8.3e-10 67.4 57 57.9
MD11G1284700 Malus domestica HOM05D001246 ORTHO05D005436 8.3e-10 67.4 54 61.1
Dinv32931 Davidia involucrata HOM05D001246 ORTHO05D005436 1.1e-09 67.0 54 63.0
Gohir.A08G186000 Gossypium hirsutum HOM05D001246 ORTHO05D005436 1.1e-09 67.0 55 61.8
Gohir.D08G204100 Gossypium hirsutum HOM05D001246 ORTHO05D005436 1.1e-09 67.0 55 61.8
Gohir.D12G004500 Gossypium hirsutum HOM05D001246 ORTHO05D005436 1.1e-09 67.0 54 57.4
Gorai.004G216100 Gossypium raimondii HOM05D001246 ORTHO05D005436 1.1e-09 67.0 55 61.8
Gorai.008G004400 Gossypium raimondii HOM05D001246 ORTHO05D005436 1.1e-09 67.0 54 57.4
THA.LOC104802232 Tarenaya hassleriana HOM05D001246 ORTHO05D005436 1.1e-09 67.0 55 61.8
TAR636G1576 Trochodendron aralioides HOM05D001246 ORTHO05D005436 1.1e-09 67.0 54 57.4
Ca_08600_v3 Cicer arietinum L. HOM05D001246 ORTHO05D005436 1.4e-09 66.6 56 60.7
SalBow6G1081 Salvia bowleyana HOM05D001246 ORTHO05D005436 1.4e-09 66.6 53 66.0
MSTRG.17444 Avicennia marina HOM05D001246 ORTHO05D005436 1.8e-09 66.2 54 61.1
ClCG09G007070 Citrullus lanatus HOM05D001246 ORTHO05D005436 1.8e-09 66.2 57 59.6
HanXRQChr15g0466701 Helianthus annuus HOM05D001246 ORTHO05D005436 1.8e-09 66.2 53 58.5
Actinidia00756 Actinidia chinensis HOM05D001246 ORTHO05D005436 2.4e-09 65.9 54 61.1
Hma1.2p1_0822F.1_g224520 Hydrangea macrophylla HOM05D001246 ORTHO05D005436 2.4e-09 65.9 54 61.1
SalBow4G0961 Salvia bowleyana HOM05D001246 ORTHO05D005436 2.4e-09 65.9 54 61.1
CANSAT25G0266 Cannabis sativa HOM05D001246 ORTHO05D005436 3.1e-09 65.5 53 62.3
Thhalv10006027m.g Eutrema salsugineum HOM05D001246 ORTHO05D005436 3.1e-09 65.5 56 62.5
Gohir.D11G128200 Gossypium hirsutum HOM05D001246 ORTHO05D005436 3.1e-09 65.5 55 58.2
Gorai.007G137100 Gossypium raimondii HOM05D001246 ORTHO05D005436 3.1e-09 65.5 55 58.2
TAR362G0525 Trochodendron aralioides HOM05D001246 ORTHO05D005436 3.1e-09 65.5 54 57.4
vmacro02575 Vaccinium macrocarpon HOM05D001246 ORTHO05D005436 3.1e-09 65.5 55 61.8
arahy.Tifrunner.gnm1.ann1.D7XM6E Arachis hypogaea HOM05D001246 ORTHO05D005436 4.1e-09 65.1 54 59.3
arahy.Tifrunner.gnm1.ann1.HLIX3I Arachis hypogaea HOM05D001246 ORTHO05D005436 4.1e-09 65.1 54 59.3
MELO3C015831.2 Cucumis melo HOM05D001246 ORTHO05D005436 4.1e-09 65.1 57 57.9
CsaV3_7G028100 Cucumis sativus L. HOM05D001246 ORTHO05D005436 4.1e-09 65.1 57 57.9
Actinidia13471 Actinidia chinensis HOM05D001246 ORTHO05D030885 5.4e-09 64.7 54 59.3
MSTRG.21557 Avicennia marina HOM05D001246 ORTHO05D005436 5.4e-09 64.7 43 72.1
BcaC07g42704 Brassica carinata HOM05D001246 ORTHO05D005436 5.4e-09 64.7 54 64.8
A09p55000 Brassica napus HOM05D001246 ORTHO05D005436 5.4e-09 64.7 54 64.8
BraA09t40909Z Brassica rapa HOM05D001246 ORTHO05D005436 5.4e-09 64.7 54 64.8
CSS0032226 Camellia sinensis var. sinensis HOM05D001246 ORTHO05D005436 5.4e-09 64.7 54 59.3
BcaC07g40799 Brassica carinata HOM05D001246 ORTHO05D005436 7.0e-09 64.3 54 63.0
BolC8t51369H Brassica oleracea HOM05D001246 ORTHO05D005436 7.0e-09 64.3 54 63.0
CSS0028197 Camellia sinensis var. sinensis HOM05D001246 ORTHO05D005436 7.0e-09 64.3 54 57.4
DCAR_012479 Daucus carota HOM05D001246 ORTHO05D005436 7.0e-09 64.3 54 61.1
CSS0000251 Camellia sinensis var. sinensis HOM05D001246 ORTHO05D005436 1.6e-08 63.2 54 57.4
Migut.N02051 Erythranthe guttata HOM05D001246 ORTHO05D005436 1.6e-08 63.2 43 69.8
Medtr0408s0030 Medicago truncatula HOM05D000165 ORTHO05D001328 1.6e-08 63.2 62 53.2
Medtr6g042690 Medicago truncatula HOM05D000165 ORTHO05D001328 1.6e-08 63.2 62 53.2
Nn1g02252 Nelumbo nucifera HOM05D001246 ORTHO05D005436 1.6e-08 63.2 53 60.4
unitig_744.g24483 Utricularia gibba HOM05D001246 ORTHO05D005436 2.0e-08 62.8 53 66.0
unitig_744.g24624 Utricularia gibba HOM05D001246 ORTHO05D005436 2.0e-08 62.8 43 72.1
C08p37910 Brassica napus HOM05D001246 ORTHO05D005436 2.7e-08 62.4 54 61.1
Migut.D00300 Erythranthe guttata HOM05D001246 ORTHO05D005436 2.7e-08 62.4 43 69.8
Glyma.02G086850 Glycine max HOM05D000165 ORTHO05D001328 2.7e-08 62.4 37 70.3
Glyma.07G173500 Glycine max HOM05D000165 ORTHO05D001328 2.7e-08 62.4 36 72.2
Oeu009200.1 Olea europaea HOM05D001246 ORTHO05D005436 2.7e-08 62.4 43 72.1
TPR.G15338 Trifolium pratense HOM05D000165 ORTHO05D001328 2.7e-08 62.4 36 75.0
unitig_21.g20295 Utricularia gibba HOM05D001246 ORTHO05D005436 2.7e-08 62.4 53 66.0
Lj1A46T44 Lonicera japonica HOM05D001246 ORTHO05D005436 3.5e-08 62.0 43 72.1
Aqoxy5G00498 Aquilegia oxysepala HOM05D001246 ORTHO05D005436 4.5e-08 61.6 43 67.4
SGA_v2.0_scaffold1G00482 Striga asiatica HOM05D001246 ORTHO05D005436 5.9e-08 61.2 54 57.4
Oeu037563.1 Olea europaea HOM05D001246 ORTHO05D005436 7.7e-08 60.8 42 71.4
arahy.Tifrunner.gnm1.ann1.WV4Z1N Arachis hypogaea HOM05D000165 ORTHO05D001328 1.0e-07 60.5 38 65.8
Eucgr.H01476 Eucalyptus grandis HOM05D001246 ORTHO05D005436 1.3e-07 60.1 55 54.5
Hund18736 Selenicereus undatus HOM05D001246 ORTHO05D005436 1.3e-07 60.1 58 51.7
PGSC0003DMG400020128 Solanum tuberosum HOM05D001246 ORTHO05D005436 1.3e-07 60.1 54 59.3
EL10Ac7g15789 Beta vulgaris HOM05D001246 ORTHO05D005436 1.7e-07 59.7 63 54.0
DCAR_002730 Daucus carota HOM05D001246 ORTHO05D005436 2.3e-07 59.3 53 62.3
Ah.08g215980 Amaranthus hybridus HOM05D001246 ORTHO05D005436 2.9e-07 58.9 67 49.3
Nitab4.5_0009953g0010 Nicotiana tabacum HOM05D001246 ORTHO05D005436 2.9e-07 58.9 54 57.4
Sed0011782 Sechium edule HOM05D001246 ORTHO05D005436 2.9e-07 58.9 55 56.4
Peaxi162Scf00783g00224 Petunia axillaris HOM05D001246 ORTHO05D005436 3.8e-07 58.5 54 53.7
vmacro14919 Vaccinium macrocarpon HOM05D001246 ORTHO05D005436 3.8e-07 58.5 54 57.4
Cc01_g19430 Coffea canephora HOM05D001246 ORTHO05D005436 5.0e-07 58.2 57 54.4
Nitab4.5_0000759g0150 Nicotiana tabacum HOM05D001246 ORTHO05D005436 5.0e-07 58.2 56 58.9
PGSC0003DMG400012878 Solanum tuberosum HOM05D001246 ORTHO05D005436 5.0e-07 58.2 54 53.7
SGA_v2.0_scaffold81G26008 Striga asiatica HOM05D001246 ORTHO05D005436 5.0e-07 58.2 43 62.8
Phvul.003G015600 Phaseolus vulgaris HOM05D000165 ORTHO05D001328 6.6e-07 57.8 33 72.7
TPR.G30497 Trifolium pratense HOM05D000165 ORTHO05D001328 6.6e-07 57.8 36 69.4
CAN.G1549.3 Capsicum annuum HOM05D001246 ORTHO05D005436 8.6e-07 57.4 52 61.5
PSO832G2660 Papaver somniferum HOM05D001246 ORTHO05D005436 8.6e-07 57.4 54 48.1
Solyc09g065240.3 Solanum lycopersicum HOM05D001246 ORTHO05D005436 1.1e-06 57.0 54 51.9
Sopen09g026960 Solanum pennellii HOM05D001246 ORTHO05D005436 1.1e-06 57.0 54 51.9
Nitab4.5_0000458g0080 Nicotiana tabacum HOM05D001246 ORTHO05D005436 1.5e-06 56.6 54 53.7
Hund20867 Selenicereus undatus HOM05D001246 ORTHO05D005436 1.9e-06 56.2 58 48.3
arahy.Tifrunner.gnm1.ann1.UL1423 Arachis hypogaea HOM05D000165 ORTHO05D001328 2.5e-06 55.8 38 60.5
AUR62039245 Chenopodium quinoa HOM05D001246 ORTHO05D005436 2.5e-06 55.8 48 56.2
arahy.Tifrunner.gnm1.ann1.U80EG8 Arachis hypogaea HOM05D000165 ORTHO05D001328 3.3e-06 55.5 36 63.9
CAN.G232.1 Capsicum annuum HOM05D001246 ORTHO05D005436 3.3e-06 55.5 54 50.0
Sabra17G0046500 Salix brachista HOM05D000165 ORTHO05D001328 3.3e-06 55.5 36 61.1
VMungo1215G2835 Vigna mungo HOM05D000165 ORTHO05D001328 3.3e-06 55.5 33 69.7
Sed0026307 Sechium edule HOM05D001246 ORTHO05D005436 4.2e-06 55.1 44 63.6
Duzib212G0647 Durio zibethinus HOM05D000165 ORTHO05D001328 5.5e-06 54.7 36 63.9
Nitab4.5_0001228g0010 Nicotiana tabacum HOM05D001246 ORTHO05D005436 5.5e-06 54.7 54 51.9
Gohir.A09G205000 Gossypium hirsutum HOM05D000165 ORTHO05D001328 7.2e-06 54.3 36 66.7
Gohir.D09G198700 Gossypium hirsutum HOM05D000165 ORTHO05D001328 7.2e-06 54.3 36 66.7
Gorai.006G222300 Gossypium raimondii HOM05D000165 ORTHO05D001328 7.2e-06 54.3 36 66.7
Lalb_Chr10g0095571 Lupinus albus HOM05D000165 ORTHO05D001328 7.2e-06 54.3 51 49.0
Psat3g176760 Pisum sativum HOM05D000165 ORTHO05D001328 7.2e-06 54.3 36 63.9
Sc24g0002760 Simmondsia chinensis HOM05D001246 ORTHO05D005436 7.2e-06 54.3 57 54.4
TPR.G6495 Trifolium pratense HOM05D000165 ORTHO05D001328 9.5e-06 53.9 36 55.6


User provided reference genes

Program Settings