Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 4.3e-43 177.6 88 100.0
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 2.1e-26 122.1 93 75.3
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 4.8e-26 120.9 93 74.2
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 2.6e-24 115.2 91 73.6
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 5.8e-24 114.0 89 73.0
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 1.0e-20 103.2 90 63.3
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 1.8e-20 102.4 95 60.0
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 7.4e-19 97.1 83 65.1
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 3.7e-18 94.7 92 60.9
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 1.8e-17 92.4 90 58.9
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 4.1e-17 91.3 90 60.0
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 1.2e-16 89.7 92 55.4
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.5e-16 89.4 90 58.9
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 5.9e-16 87.4 90 58.9
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 8.5e-15 83.6 91 54.9
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 7.2e-14 80.5 104 49.0
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 2.7e-13 78.6 74 56.8
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 4.6e-13 77.8 91 49.5
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 6.1e-13 77.4 55 63.6
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 7.9e-13 77.0 91 48.4
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 1.0e-12 76.6 81 55.6
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 1.0e-12 76.6 74 55.4
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 2.3e-12 75.5 74 55.4
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 3.0e-12 75.1 91 48.4
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 5.1e-12 74.3 79 49.4
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 5.1e-12 74.3 80 48.8
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 6.7e-12 73.9 77 49.4
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 6.7e-12 73.9 77 49.4
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 8.8e-12 73.6 76 51.3
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 8.8e-12 73.6 74 54.1
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 2.0e-11 72.4 63 58.7
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 5.7e-11 70.9 91 51.6
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 5.7e-11 70.9 56 64.3
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 5.7e-11 70.9 93 49.5
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 7.4e-11 70.5 58 72.4
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 9.7e-11 70.1 57 63.2
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 9.7e-11 70.1 57 63.2
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.3e-10 69.7 90 45.6
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 1.3e-10 69.7 80 46.2
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 2.8e-10 68.6 72 54.2
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 3.7e-10 68.2 78 44.9
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 6.3e-10 67.4 55 54.5
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 6.3e-10 67.4 90 43.3
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 8.2e-10 67.0 99 40.4
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 8.2e-10 67.0 85 45.9
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 1.4e-09 66.2 85 45.9
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 1.4e-09 66.2 75 50.7
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 1.4e-09 66.2 77 49.4
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 3.1e-09 65.1 76 50.0
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 5.3e-09 64.3 87 52.9
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 5.3e-09 64.3 90 43.3
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 6.9e-09 63.9 92 44.6
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 6.9e-09 63.9 87 46.0
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 9.1e-09 63.5 96 39.6
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 2.0e-08 62.4 94 45.7
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 2.6e-08 62.0 77 48.1
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 2.6e-08 62.0 80 46.2
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 3.4e-08 61.6 92 45.7
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 3.4e-08 61.6 68 48.5
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 3.4e-08 61.6 72 50.0
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 3.4e-08 61.6 52 61.5
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 3.4e-08 61.6 66 53.0
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 7.7e-08 60.5 98 41.8
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 7.7e-08 60.5 73 43.8
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 1.0e-07 60.1 91 45.1
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.0e-07 60.1 52 55.8
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.0e-07 60.1 52 55.8
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.3e-07 59.7 78 48.7
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 1.3e-07 59.7 77 48.1
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 1.3e-07 59.7 72 45.8
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 1.3e-07 59.7 55 58.2
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.7e-07 59.3 56 51.8
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 1.7e-07 59.3 82 43.9
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 2.2e-07 58.9 55 52.7
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 2.9e-07 58.5 71 46.5
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 2.9e-07 58.5 71 47.9
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 3.8e-07 58.2 80 46.2
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 3.8e-07 58.2 80 46.2
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 3.8e-07 58.2 80 46.2
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 3.8e-07 58.2 80 46.2
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 3.8e-07 58.2 80 46.2
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 5.0e-07 57.8 90 38.9
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 6.5e-07 57.4 55 49.1
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 6.5e-07 57.4 80 46.2
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 8.5e-07 57.0 55 50.9
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 8.5e-07 57.0 56 51.8
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 8.5e-07 57.0 52 55.8
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 1.1e-06 56.6 85 43.5
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.9e-06 55.8 56 50.0
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 1.9e-06 55.8 55 47.3
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 3.2e-06 55.1 44 56.8
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 3.2e-06 55.1 56 51.8
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 5.5e-06 54.3 72 44.4
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 5.5e-06 54.3 89 44.9
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 5.5e-06 54.3 77 44.2
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 5.5e-06 54.3 77 44.2
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 7.2e-06 53.9 80 42.5
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 7.2e-06 53.9 77 46.8
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 9.4e-06 53.5 72 45.8


User provided reference genes

Program Settings