Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 6.9e-94 347.4 192 100.0
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 4.2e-75 285.0 208 76.0
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 8.7e-73 277.3 210 73.8
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 1.8e-70 269.6 208 71.2
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 2.0e-69 266.2 208 71.6
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 6.3e-63 244.6 207 68.1
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 1.1e-62 243.8 208 67.8
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 2.4e-62 242.7 208 67.8
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 4.5e-61 238.4 207 64.7
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 2.2e-60 236.1 208 65.4
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 5.0e-60 235.0 207 67.1
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 3.2e-59 232.3 207 63.8
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 5.5e-59 231.5 208 63.5
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 6.7e-57 224.6 207 64.3
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 6.7e-57 224.6 209 63.6
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 6.7e-57 224.6 209 64.1
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 2.4e-54 216.1 207 61.8
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 4.1e-54 215.3 207 61.4
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 2.0e-53 213.0 207 60.4
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 2.0e-53 213.0 207 57.5
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 2.6e-53 212.6 208 60.6
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 4.5e-53 211.8 207 60.9
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 5.9e-53 211.5 207 60.9
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 5.9e-53 211.5 207 60.9
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 7.7e-53 211.1 207 59.4
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 1.7e-52 209.9 207 60.9
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 2.9e-52 209.1 204 58.3
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 6.5e-52 208.0 207 59.9
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 2.5e-51 206.1 207 58.9
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 3.2e-51 205.7 206 60.2
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 5.5e-51 204.9 180 64.4
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 9.4e-51 204.1 208 56.7
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 1.2e-50 203.8 207 57.5
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 1.6e-50 203.4 206 60.7
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 3.6e-50 202.2 207 58.5
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 4.7e-50 201.8 205 57.6
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 7.9e-50 201.1 206 57.3
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 1.4e-49 200.3 207 56.5
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 3.0e-49 199.1 208 57.7
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 5.1e-49 198.4 184 59.2
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 5.1e-49 198.4 207 56.5
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 5.1e-49 198.4 200 59.5
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 1.1e-48 197.2 207 56.0
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.5e-48 196.8 207 54.1
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 1.5e-48 196.8 207 56.5
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 7.4e-48 194.5 203 57.1
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 7.4e-48 194.5 210 57.6
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.3e-47 193.7 205 55.1
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 5.3e-46 188.3 207 55.6
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 5.0e-44 181.8 198 55.6
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 5.0e-44 181.8 207 53.6
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 8.5e-44 181.0 205 53.7
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 1.1e-43 180.6 207 51.2
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 1.4e-43 180.3 208 53.8
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 7.2e-43 177.9 206 51.5
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 2.0e-40 169.9 207 52.2
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.2e-37 160.6 168 56.0
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 7.7e-37 157.9 159 57.9
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 4.2e-35 152.1 207 48.3
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 2.8e-31 139.4 201 43.3
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.1e-30 137.5 184 47.3
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 4.1e-30 135.6 198 42.4
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.6e-29 133.7 167 54.5
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 4.5e-29 132.1 104 66.3
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 3.8e-28 129.0 104 63.5
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 2.0e-24 116.7 207 40.1
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 4.8e-23 112.1 104 56.7
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 2.5e-19 99.8 122 51.6
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 9.5e-19 97.8 110 51.8
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 8.9e-17 91.3 84 56.0
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 4.9e-15 85.5 90 53.3
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 6.3e-15 85.1 114 36.0
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 9.5e-11 71.2 207 31.9
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 4.0e-09 65.9 191 29.3
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 8.9e-09 64.7 169 35.5
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 4.9e-07 58.9 119 35.3


User provided reference genes

Program Settings