Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.9e-226 788.9 400 100.0
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 1.4e-194 682.9 394 88.3
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 1.6e-190 669.5 394 86.3
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 8.7e-184 647.1 395 84.3
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 1.2e-177 626.7 394 81.0
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 2.5e-175 619.0 396 79.3
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.0e-168 597.0 379 81.5
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 1.7e-166 589.7 417 73.9
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 2.2e-166 589.3 396 75.5
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 5.3e-165 584.7 404 73.8
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.7e-163 579.7 396 75.0
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 2.9e-163 578.9 420 71.7
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 4.7e-161 571.6 401 72.8
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 3.9e-160 568.5 419 70.6
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 1.1e-159 567.0 406 72.7
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 4.4e-159 565.1 402 73.9
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 2.8e-158 562.4 424 70.0
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 3.7e-158 562.0 431 69.1
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 4.8e-158 561.6 421 69.8
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 4.1e-157 558.5 424 71.0
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 5.3e-157 558.1 407 71.3
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 2.2e-155 552.7 432 67.8
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.7e-153 545.8 409 70.7
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.6e-153 545.4 408 70.3
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 1.4e-152 543.5 431 68.4
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 1.8e-152 543.1 396 71.0
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 2.3e-152 542.7 419 69.0
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.1e-151 540.4 409 69.4
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 1.5e-151 540.0 349 77.7
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 9.7e-151 537.3 411 69.1
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 1.1e-149 533.9 423 67.6
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 5.3e-149 531.6 403 70.0
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 9.1e-149 530.8 419 65.9
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 9.1e-149 530.8 310 81.9
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 1.6e-148 530.0 308 82.1
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 2.0e-148 529.6 347 76.4
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 7.7e-148 527.7 387 70.5
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 7.7e-148 527.7 430 65.6
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.0e-147 527.3 335 77.9
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 2.2e-147 526.2 422 64.5
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 3.2e-146 522.3 399 68.7
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 4.2e-146 521.9 398 68.6
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 5.5e-146 521.5 404 68.1
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 2.1e-145 519.6 364 70.6
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.8e-144 516.5 382 70.9
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 6.8e-144 514.6 422 65.9
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 8.8e-144 514.2 310 81.0
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 1.2e-143 513.8 347 73.8
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 2.6e-143 512.7 419 64.4
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 3.4e-143 512.3 360 72.5
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 7.5e-143 511.1 424 64.4
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 2.2e-142 509.6 373 70.2
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 2.8e-142 509.2 447 64.0
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 8.3e-142 507.7 309 79.9
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 3.1e-141 505.8 357 72.3
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 5.4e-141 505.0 393 67.2
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 5.4e-141 505.0 373 71.3
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 7.0e-141 504.6 394 67.3
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 9.1e-141 504.2 422 64.2
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 9.1e-141 504.2 421 64.6
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.2e-140 503.8 404 67.6
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.6e-140 503.4 404 67.6
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.6e-140 503.4 401 66.6
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 2.7e-140 502.7 358 70.1
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 2.7e-140 502.7 319 77.1
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 3.5e-140 502.3 370 69.5
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 4.5e-140 501.9 401 66.3
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 7.7e-140 501.1 367 68.7
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 7.7e-140 501.1 367 68.7
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 7.7e-140 501.1 414 65.7
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 7.7e-140 501.1 403 65.0
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 1.0e-139 500.7 400 65.5
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.3e-139 500.4 405 66.4
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.3e-139 500.4 401 66.3
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.7e-139 500.0 339 72.6
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.7e-139 500.0 374 69.8
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 1.7e-139 500.0 403 65.3
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 2.9e-139 499.2 367 68.4
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 2.9e-139 499.2 311 77.5
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 5.0e-139 498.4 371 69.0
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 1.5e-138 496.9 400 65.0
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.9e-138 496.5 404 65.8
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 2.5e-138 496.1 369 68.8
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 5.5e-138 495.0 396 66.4
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 7.2e-138 494.6 353 70.8
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 9.4e-138 494.2 378 68.0
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.2e-137 493.8 382 67.5
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.2e-137 493.8 366 67.2
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.6e-137 493.4 339 72.9
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 2.7e-137 492.7 372 68.0
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 2.7e-137 492.7 372 68.0
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.0e-136 490.7 375 67.2
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.0e-136 490.7 375 67.2
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 1.4e-136 490.3 305 78.0
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.4e-136 490.3 305 78.0
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.3e-136 489.6 416 64.9
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 3.0e-136 489.2 384 66.7
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 3.0e-136 489.2 311 75.9
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 4.0e-136 488.8 366 67.8
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.2e-136 488.4 405 67.2
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 5.2e-136 488.4 381 66.1
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 5.2e-136 488.4 423 62.9
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 6.8e-136 488.0 307 76.2
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 8.8e-136 487.6 371 68.2
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 1.2e-135 487.3 369 68.3
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 3.4e-135 485.7 406 60.8
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 3.4e-135 485.7 310 76.8
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 2.2e-134 483.0 347 71.8
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 4.9e-134 481.9 296 81.1
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 8.3e-134 481.1 472 59.3
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 8.3e-134 481.1 322 73.3
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 1.1e-133 480.7 377 65.5
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.1e-133 480.7 336 71.4
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 1.1e-133 480.7 346 72.0
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 2.4e-133 479.6 322 73.0
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 9.2e-133 477.6 392 65.1
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 2.0e-132 476.5 305 77.4
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 5.9e-132 474.9 376 65.4
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 7.7e-132 474.6 311 74.6
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 6.6e-131 471.5 403 63.8
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.1e-130 470.7 408 64.0
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 5.6e-130 468.4 308 74.0
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 2.1e-129 466.5 305 73.4
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 5.7e-127 458.4 345 69.3
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 4.9e-126 455.3 319 71.5
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 1.6e-124 450.3 422 59.2
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 3.5e-124 449.1 422 59.2
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.2e-121 440.7 337 65.9
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 4.7e-121 438.7 391 59.3
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 4.7e-121 438.7 313 67.4
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 6.8e-120 434.9 313 67.1
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 8.9e-120 434.5 329 68.7
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.2e-119 434.1 389 62.2
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 8.3e-118 427.9 280 75.4
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.1e-117 427.6 349 62.8
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 1.9e-117 426.8 412 57.5
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.0e-115 421.0 362 60.5
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 7.3e-114 414.8 389 54.2
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 3.6e-113 412.5 398 56.3
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.5e-111 407.1 358 59.5
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.4e-109 400.6 308 64.3
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 2.1e-108 396.7 256 74.6
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 3.5e-108 396.0 304 67.4
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.2e-105 387.5 372 56.2
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 1.4e-104 384.0 256 73.0
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 6.8e-104 381.7 411 52.6
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 5.6e-98 362.1 311 62.1
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 4.8e-89 332.4 419 48.4
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.2e-84 317.8 182 83.0
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.1e-80 303.1 295 56.3
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 5.3e-80 302.4 286 59.1
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 4.9e-78 295.8 258 63.2
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 1.1e-69 268.1 307 51.8
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 7.9e-68 261.9 155 80.6
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 3.7e-57 226.5 325 41.2
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 8.5e-54 215.3 215 57.7
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 1.7e-33 147.9 295 33.2
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 6.1e-28 129.4 424 29.5
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 2.6e-18 97.4 49 89.8
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 1.7e-17 94.7 56 73.2
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 1.8e-16 91.3 126 47.6
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.9e-13 81.3 80 53.8
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.2e-12 78.6 63 54.0
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.5e-10 71.6 127 43.3
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 2.2e-09 67.8 136 30.9
Lalb_Chr11g0074511 Lupinus albus HOM05D004042 ORTHO05D004552 6.4e-09 66.2 119 43.7
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 8.3e-09 65.9 31 90.3
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 1.2e-07 62.0 42 69.0
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.7e-07 60.8 136 31.6
Peaxi162Scf00126g01016 Petunia axillaris HOM05D004042 ORTHO05D306396 5.0e-06 56.6 26 80.8


User provided reference genes

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