Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 0.0e+00 1228.4 635 100.0
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 0.0e+00 1228.4 635 100.0
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 0.0e+00 1156.0 636 93.7
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 0.0e+00 1152.5 637 93.7
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 0.0e+00 1078.5 591 93.7
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 5.2e-308 1060.4 637 86.3
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 4.6e-304 1047.3 637 85.9
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 1.1e-302 1042.7 637 85.9
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 8.1e-301 1036.6 641 83.8
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 2.9e-298 1028.1 639 83.6
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 3.8e-298 1027.7 637 84.9
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 9.9e-291 1003.0 623 85.6
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 9.0e-276 953.4 655 76.3
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 3.6e-272 941.4 645 74.6
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 1.5e-270 936.0 647 75.3
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 3.3e-270 934.9 647 75.1
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 5.3e-268 927.5 647 74.7
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 4.5e-267 924.5 657 73.8
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.0e-266 923.3 646 73.8
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 1.0e-266 923.3 647 74.5
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 1.9e-265 919.1 648 73.5
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 3.6e-264 914.8 650 72.9
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 6.1e-264 914.1 647 73.7
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.0e-263 913.3 649 73.5
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 1.4e-263 912.9 645 74.0
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 3.0e-263 911.8 649 73.7
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 6.7e-263 910.6 648 72.2
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 6.7e-263 910.6 649 74.0
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 1.5e-262 909.4 646 72.9
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.5e-262 909.4 651 73.7
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 1.5e-262 909.4 649 73.8
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 3.3e-262 908.3 643 72.9
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 3.3e-262 908.3 648 71.9
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 4.4e-262 907.9 648 73.5
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 7.4e-262 907.1 647 73.7
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 9.7e-262 906.7 652 71.6
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 1.3e-261 906.4 661 73.2
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 3.7e-261 904.8 637 75.5
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 3.7e-261 904.8 650 74.0
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.4e-260 902.9 661 72.8
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 5.3e-260 901.0 630 75.6
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 2.0e-259 899.0 656 70.6
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 3.4e-259 898.3 638 73.0
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 5.9e-259 897.5 659 70.1
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 7.7e-259 897.1 649 73.0
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 1.7e-258 896.0 650 72.0
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.7e-258 896.0 640 73.9
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 6.5e-258 894.0 640 73.8
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 6.5e-258 894.0 640 73.3
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 4.2e-257 891.3 653 70.9
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 2.7e-256 888.6 640 72.2
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 3.6e-256 888.3 640 72.5
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 3.6e-256 888.3 629 73.3
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 7.9e-256 887.1 640 73.0
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 1.0e-255 886.7 631 73.7
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 1.4e-255 886.3 652 70.7
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 1.4e-255 886.3 651 71.1
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 1.4e-255 886.3 648 71.5
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 2.3e-255 885.6 654 70.3
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 2.3e-255 885.6 654 70.5
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 2.3e-255 885.6 651 70.7
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 5.2e-255 884.4 635 73.5
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 8.8e-255 883.6 646 70.7
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 8.8e-255 883.6 656 70.1
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 1.1e-254 883.2 653 70.3
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.1e-254 883.2 637 74.4
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 4.4e-254 881.3 651 70.5
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 7.4e-254 880.6 633 74.1
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 1.3e-253 879.8 645 72.1
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.7e-253 879.4 630 73.0
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 2.8e-253 878.6 654 69.6
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 2.8e-253 878.6 651 69.9
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 2.8e-253 878.6 650 69.8
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 5.3e-252 874.4 636 73.3
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 3.5e-251 871.7 638 71.9
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 1.9e-249 865.9 638 71.9
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 1.4e-247 859.8 639 71.7
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 2.0e-246 855.9 654 69.0
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 2.6e-246 855.5 644 71.6
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 8.2e-245 850.5 651 69.9
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 8.2e-245 850.5 637 70.5
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 8.2e-245 850.5 646 70.0
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.4e-244 849.7 643 68.7
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 1.2e-243 846.7 646 69.7
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 3.5e-243 845.1 646 69.5
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 1.7e-242 842.8 620 72.7
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 2.9e-242 842.0 648 69.8
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 8.5e-242 840.5 598 74.1
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.1e-240 835.9 646 68.7
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 3.6e-240 835.1 645 68.4
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 1.4e-239 833.2 652 68.4
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 6.8e-239 830.9 639 69.8
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 2.0e-238 829.3 641 68.6
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 5.7e-238 827.8 649 68.4
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 7.0e-236 820.8 645 65.3
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 4.5e-235 818.1 634 67.2
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 1.3e-234 816.6 648 66.8
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 3.8e-234 815.1 635 68.8
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.2e-233 811.6 635 68.8
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.6e-232 809.7 642 65.1
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 1.4e-231 806.6 654 66.1
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.1e-228 797.0 651 65.9
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 7.3e-225 784.3 636 65.4
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.2e-224 783.5 649 65.5
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 8.0e-224 780.8 647 65.5
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 7.8e-219 764.2 644 65.8
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.5e-217 760.0 636 62.9
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 2.5e-209 732.6 620 65.6
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 6.8e-207 724.5 638 60.8
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.0e-206 723.0 638 61.1
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 9.2e-204 714.1 641 61.3
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 2.6e-198 696.0 535 70.5
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 7.8e-195 684.5 646 58.0
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 3.6e-192 675.6 631 61.2
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 9.0e-191 671.0 644 57.3
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 3.4e-190 669.1 644 56.8
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.4e-188 663.7 638 57.4
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 3.0e-186 656.0 619 60.3
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.1e-168 596.7 641 53.5
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 2.8e-160 569.7 631 54.2
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.4e-154 550.8 545 56.5
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 2.8e-144 516.5 664 46.8
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 4.8e-144 515.8 665 46.0
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 1.1e-127 461.5 662 42.4
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 9.4e-124 448.4 349 67.3
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 3.8e-109 399.8 321 67.0
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 4.0e-90 336.7 243 67.5
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 2.6e-89 334.0 384 49.7
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 5.8e-65 253.1 298 51.3
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 3.4e-41 174.1 565 28.3
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 1.0e-40 172.6 114 78.9
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 9.4e-39 166.0 112 71.4
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 2.0e-25 121.7 115 60.0
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 1.2e-14 85.9 96 55.2
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 7.5e-12 76.6 81 48.1
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 2.7e-09 68.2 41 73.2
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.8e-08 64.3 52 55.8
CDE04G1231 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.2e-06 59.3 50 56.0
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 6.1e-06 57.0 46 58.7


User provided reference genes

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