Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 8.3e-67 256.9 130 100.0
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 8.9e-45 183.7 125 75.2
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 4.4e-36 154.8 123 71.5
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 5.8e-36 154.5 121 68.6
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.1e-31 140.2 130 61.5
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 3.3e-31 138.7 133 60.2
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 1.2e-30 136.7 118 61.9
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 8.1e-30 134.0 132 59.8
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.4e-29 133.3 117 57.3
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 3.4e-28 128.6 123 61.0
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 2.3e-24 115.9 120 53.3
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 5.1e-24 114.8 122 54.1
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.6e-22 109.8 125 51.2
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.6e-22 108.6 125 48.8
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 3.6e-22 108.6 116 50.9
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 6.2e-22 107.8 132 49.2
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 8.1e-22 107.5 122 50.8
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.1e-21 107.1 117 53.0
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 1.1e-21 107.1 132 48.5
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.8e-21 106.3 124 50.8
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.2e-21 104.8 118 50.8
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 5.2e-21 104.8 114 50.9
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 6.8e-21 104.4 116 52.6
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 6.8e-21 104.4 115 52.2
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 8.9e-21 104.0 117 51.3
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.5e-20 103.2 116 53.4
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.5e-20 103.2 117 51.3
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.6e-20 102.4 132 47.7
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 3.4e-20 102.1 115 52.2
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 4.4e-20 101.7 120 51.7
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 4.4e-20 101.7 129 48.8
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 5.8e-20 101.3 116 50.0
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 9.9e-20 100.5 122 47.5
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 1.3e-19 100.1 120 50.0
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.7e-19 99.8 114 50.9
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 3.8e-19 98.6 116 46.6
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 3.8e-19 98.6 116 46.6
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 3.8e-19 98.6 116 46.6
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.9e-19 98.2 114 50.9
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 4.9e-19 98.2 118 49.2
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 4.9e-19 98.2 117 52.1
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 8.4e-19 97.4 114 50.0
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.1e-18 97.1 115 50.4
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.4e-18 96.7 125 44.8
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.9e-18 96.3 116 45.7
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.9e-18 96.3 116 45.7
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 2.4e-18 95.9 117 49.6
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 2.4e-18 95.9 116 47.4
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 3.2e-18 95.5 115 47.0
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 3.2e-18 95.5 116 44.8
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 3.2e-18 95.5 126 47.6
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.2e-18 95.1 99 50.5
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 4.2e-18 95.1 123 46.3
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 4.2e-18 95.1 117 51.3
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 5.4e-18 94.7 115 45.2
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 5.4e-18 94.7 115 47.8
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 7.1e-18 94.4 121 47.9
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 7.1e-18 94.4 121 47.9
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 7.1e-18 94.4 124 47.6
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 7.1e-18 94.4 131 45.0
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 7.1e-18 94.4 115 47.0
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 9.2e-18 94.0 117 49.6
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.2e-17 93.6 117 48.7
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.6e-17 93.2 118 50.0
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.7e-17 92.4 119 45.4
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 2.7e-17 92.4 117 46.2
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 2.7e-17 92.4 124 45.2
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 4.6e-17 91.7 118 44.1
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 6.0e-17 91.3 117 45.3
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 6.0e-17 91.3 119 47.9
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 7.8e-17 90.9 117 48.7
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 7.8e-17 90.9 114 47.4
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.8e-17 90.9 99 49.5
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 7.8e-17 90.9 112 48.2
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.0e-16 90.5 119 45.4
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.3e-16 90.1 118 46.6
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.3e-16 90.1 127 44.1
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.7e-16 89.7 114 48.2
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.3e-16 89.4 125 46.4
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.3e-16 89.4 118 46.6
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.9e-16 88.6 125 46.4
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.9e-16 88.6 125 46.4
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.9e-16 88.6 125 46.4
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 5.1e-16 88.2 114 46.5
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.1e-15 87.0 118 46.6
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 1.1e-15 87.0 119 45.4
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.5e-15 86.7 124 42.7
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.9e-15 86.3 134 40.3
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.9e-15 86.3 121 48.8
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.9e-15 86.3 114 43.0
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.5e-15 85.9 121 47.9
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 2.5e-15 85.9 106 47.2
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 2.5e-15 85.9 106 47.2
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 9.6e-15 84.0 112 42.9
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 9.6e-15 84.0 136 41.9
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.3e-14 83.6 113 48.7
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.3e-14 83.6 118 43.2
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.1e-14 82.8 111 48.6
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 3.6e-14 82.0 107 45.8
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 3.6e-14 82.0 146 41.1
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.8e-14 81.6 111 43.2
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 6.2e-14 81.3 124 42.7
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 8.1e-14 80.9 117 43.6
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 8.1e-14 80.9 80 53.8
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 1.1e-13 80.5 115 47.8
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.1e-13 80.5 110 42.7
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.1e-13 80.5 110 42.7
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.4e-13 80.1 124 40.3
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.4e-13 80.1 127 40.2
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.4e-13 80.1 127 40.2
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 1.4e-13 80.1 81 53.1
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 4.0e-13 78.6 128 43.8
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 4.0e-13 78.6 109 44.0
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 6.9e-13 77.8 139 37.4
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 6.9e-13 77.8 111 41.4
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.9e-13 77.8 130 41.5
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 9.0e-13 77.4 118 41.5
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 2.0e-12 76.3 115 44.3
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.0e-12 76.3 113 42.5
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 2.6e-12 75.9 117 40.2
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 2.6e-12 75.9 117 41.0
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 2.6e-12 75.9 116 41.4
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 4.4e-12 75.1 79 46.8
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 4.4e-12 75.1 79 46.8
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 4.4e-12 75.1 144 37.5
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 4.4e-12 75.1 99 46.5
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 4.4e-12 75.1 121 38.0
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 5.8e-12 74.7 116 40.5
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.8e-12 74.7 124 41.1
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.7e-11 73.2 143 35.7
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.7e-11 73.2 124 40.3
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.7e-11 73.2 116 39.7
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.9e-11 72.4 116 41.4
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 2.9e-11 72.4 104 45.2
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 8.4e-11 70.9 123 39.8
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.9e-10 69.7 125 38.4
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.9e-10 69.7 115 39.1
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.9e-10 69.7 117 37.6
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 2.4e-10 69.3 136 39.7
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.2e-10 68.9 121 38.0
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 2.1e-09 66.2 69 53.6
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 3.5e-09 65.5 124 41.1
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 7.8e-09 64.3 119 38.7
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.3e-08 63.5 126 40.5
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.6e-08 61.2 109 42.2
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 8.7e-08 60.8 80 41.2
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 1.1e-07 60.5 109 39.4
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 3.3e-07 58.9 139 33.1
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 4.3e-07 58.5 53 58.5
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 5.6e-07 58.2 115 37.4
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 7.3e-07 57.8 126 31.0
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 7.3e-07 57.8 40 72.5
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 7.3e-07 57.8 115 33.9
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 9.6e-07 57.4 94 43.6
CsaV3_3G001020 Cucumis sativus L. HOM05D001798 ORTHO05D022392 1.6e-06 56.6 36 75.0
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.6e-06 56.6 140 32.9
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 2.8e-06 55.8 33 75.8
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.6e-06 55.5 153 31.4
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 6.2e-06 54.7 150 34.7


User provided reference genes

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