Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21206_v3 Cicer arietinum L. HOM05D000306 ORTHO05D007657 0.0e+00 1122.1 577 100.0
Medtr4g128640 Medicago truncatula HOM05D000306 ORTHO05D007657 7.4e-309 1063.1 577 93.8
Lj4g0000904 Lotus japonicus HOM05D000306 ORTHO05D007657 7.9e-303 1043.1 575 92.3
Glyma.17G065600 Glycine max HOM05D000306 ORTHO05D007657 6.2e-300 1033.5 576 91.7
Lalb_Chr07g0180291 Lupinus albus HOM05D000306 ORTHO05D007657 1.3e-294 1015.8 579 89.6
VMungo1215G2115 Vigna mungo HOM05D000306 ORTHO05D007657 2.0e-290 1001.9 576 85.2
Phvul.003G148000 Phaseolus vulgaris HOM05D000306 ORTHO05D007657 5.9e-290 1000.3 576 88.9
arahy.Tifrunner.gnm1.ann1.2QW3Q9 Arachis hypogaea HOM05D000306 ORTHO05D007657 5.5e-288 993.8 588 83.5
CiPaw.07G190000 Carya illinoinensis HOM05D000306 ORTHO05D007657 1.1e-275 953.0 581 80.7
QL02p097271 Quercus lobata HOM05D000306 ORTHO05D007657 9.1e-275 949.9 572 80.8
Glyma.13G094600 Glycine max HOM05D000306 ORTHO05D007657 5.9e-274 947.2 539 89.6
Hma1.2p1_3301F.1_g335020 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 1.0e-273 946.4 572 80.6
Manes.06G026700 Manihot esculenta HOM05D000306 ORTHO05D007657 1.0e-273 946.4 567 80.6
Cpa.g.sc95.65 Carica papaya HOM05D000306 ORTHO05D007657 4.2e-272 941.0 573 79.9
Ciclev10007754m.g Citrus clementina HOM05D000306 ORTHO05D007657 1.2e-271 939.5 575 82.4
CANSAT11G0744 Cannabis sativa HOM05D000306 ORTHO05D007657 3.6e-271 937.9 569 83.8
GSVIVG01029150001 Vitis vinifera HOM05D000306 ORTHO05D007657 3.6e-271 937.9 578 78.2
Prupe.1G089400 Prunus persica HOM05D000306 ORTHO05D007657 4.7e-271 937.6 579 78.8
FvH4_4g09080 Fragaria vesca HOM05D000306 ORTHO05D007657 1.0e-270 936.4 572 79.9
PGR142G2969 Punica granatum HOM05D000306 ORTHO05D007657 1.4e-270 936.0 579 79.8
Potri.018G095700 Populus trichocarpa HOM05D000306 ORTHO05D007657 2.3e-270 935.3 588 77.7
TWI34G1080 Tripterygium wilfordii HOM05D000306 ORTHO05D007657 3.0e-270 934.9 567 82.7
AL7G21840 Arabidopsis lyrata HOM05D000306 ORTHO05D007657 3.9e-270 934.5 573 78.5
Gorai.009G006500 Gossypium raimondii HOM05D000306 ORTHO05D007657 8.8e-270 933.3 576 78.8
Carub.0007s1029 Capsella rubella HOM05D000306 ORTHO05D007657 1.1e-269 932.9 571 77.9
Dinv42746 Davidia involucrata HOM05D000306 ORTHO05D007657 1.1e-269 932.9 573 79.8
Dinv43355 Davidia involucrata HOM05D000306 ORTHO05D007657 1.1e-269 932.9 573 79.8
CsaV3_2G008000 Cucumis sativus L. HOM05D000306 ORTHO05D007657 2.0e-269 932.2 580 78.4
Eucgr.C00188 Eucalyptus grandis HOM05D000306 ORTHO05D007657 2.6e-269 931.8 579 78.4
Thhalv10024769m.g Eutrema salsugineum HOM05D000306 ORTHO05D007657 5.7e-269 930.6 573 77.8
THA.LOC104803506 Tarenaya hassleriana HOM05D000306 ORTHO05D007657 9.7e-269 929.9 572 78.7
RcHm_v2.0_Chr4g0403081 Rosa chinensis HOM05D000306 ORTHO05D007657 4.8e-268 927.5 577 82.3
Sp7g28180 Schrenkiella parvula HOM05D000306 ORTHO05D007657 6.3e-268 927.2 573 77.7
Actinidia17107 Actinidia chinensis HOM05D000306 ORTHO05D007657 8.2e-268 926.8 569 79.6
CSS0004024 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 1.8e-267 925.6 577 78.3
Sed0007717 Sechium edule HOM05D000306 ORTHO05D007657 2.4e-267 925.2 569 78.9
Aqoxy7G03118 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 9.1e-267 923.3 572 78.7
Sabra18G0081600 Salix brachista HOM05D000306 ORTHO05D007657 2.0e-266 922.2 597 76.2
Gohir.D05G006400 Gossypium hirsutum HOM05D000306 ORTHO05D007657 3.8e-265 917.9 576 78.3
C07p57810 Brassica napus HOM05D000306 ORTHO05D007657 6.5e-265 917.1 585 76.8
BraA03t15029Z Brassica rapa HOM05D000306 ORTHO05D007657 6.5e-265 917.1 585 76.8
BolC7t46241H Brassica oleracea HOM05D000306 ORTHO05D007657 8.5e-265 916.8 585 76.8
Oeu042129.1 Olea europaea HOM05D000306 ORTHO05D007657 8.5e-265 916.8 569 78.0
A03p59750 Brassica napus HOM05D000306 ORTHO05D007657 1.1e-264 916.4 585 76.6
ClCG11G012530 Citrullus lanatus HOM05D000306 ORTHO05D007657 2.5e-264 915.2 616 74.4
MD13G1267100 Malus domestica HOM05D000306 ORTHO05D007657 2.5e-264 915.2 572 79.0
FAN22G1929 Fragaria x ananassa HOM05D000306 ORTHO05D007657 5.5e-264 914.1 595 76.1
Nn2g12665 Nelumbo nucifera HOM05D000306 ORTHO05D007657 6.1e-263 910.6 571 77.2
PSO782G2546 Papaver somniferum HOM05D000306 ORTHO05D007657 6.1e-263 910.6 570 77.2
Nitab4.5_0000937g0030 Nicotiana tabacum HOM05D000306 ORTHO05D007657 1.0e-262 909.8 575 76.2
PSO063G6265 Papaver somniferum HOM05D000306 ORTHO05D007657 1.0e-262 909.8 570 77.2
HanXRQChr03g0068931 Helianthus annuus HOM05D000306 ORTHO05D007657 3.3e-261 904.8 576 76.7
Solyc07g006780.3 Solanum lycopersicum HOM05D000306 ORTHO05D007657 3.3e-261 904.8 578 75.3
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 5.7e-261 904.0 579 75.6
CAN.G584.11 Capsicum annuum HOM05D000306 ORTHO05D007657 1.7e-260 902.5 568 76.4
Sopen07g002880 Solanum pennellii HOM05D000306 ORTHO05D007657 1.7e-260 902.5 578 75.1
FAN12G4153 Fragaria x ananassa HOM05D000306 ORTHO05D007657 1.1e-259 899.8 637 71.9
PGSC0003DMG400018753 Solanum tuberosum HOM05D000306 ORTHO05D007657 1.1e-259 899.8 572 75.9
Zm00001eb069070 Zea mays HOM05D000306 ORTHO05D007657 1.4e-259 899.4 569 76.4
BcaNung00538 Brassica carinata HOM05D000306 ORTHO05D007657 7.0e-259 897.1 574 76.7
Haze_22120 Corylus avellana HOM05D000306 ORTHO05D007657 1.1e-256 889.8 595 75.8
Migut.J01462 Erythranthe guttata HOM05D000306 ORTHO05D007657 2.5e-256 888.6 579 75.0
vmacro13107 Vaccinium macrocarpon HOM05D000306 ORTHO05D007657 3.2e-256 888.3 681 68.0
TPR.G5313 Trifolium pratense HOM05D000306 ORTHO05D007657 5.5e-256 887.5 485 92.6
Lsat_1_v5_gn_7_54281 Lactuca sativa HOM05D000306 ORTHO05D007657 9.4e-256 886.7 583 75.5
Cc06_g13490 Coffea canephora HOM05D000306 ORTHO05D007657 8.0e-255 883.6 574 75.4
Peaxi162Scf00050g00633 Petunia axillaris HOM05D000306 ORTHO05D007657 8.8e-254 880.2 566 75.6
Nitab4.5_0000244g0290 Nicotiana tabacum HOM05D000306 ORTHO05D007657 2.2e-252 875.5 585 74.0
ATR0580G308 Amborella trichopoda HOM05D000306 ORTHO05D007657 2.8e-252 875.2 573 74.2
Sc14g0001220 Simmondsia chinensis HOM05D000306 ORTHO05D007657 1.1e-251 873.2 536 79.1
Rhsim01G0007000 Rhododendron simsii HOM05D000306 ORTHO05D007657 1.4e-251 872.8 602 73.6
EL10Ac8g18267 Beta vulgaris HOM05D000306 ORTHO05D007657 3.5e-250 868.2 579 73.2
HPP92_013461 Vanilla planifolia HOM05D000306 ORTHO05D007657 5.9e-250 867.5 581 73.0
Gohir.A05G005700 Gossypium hirsutum HOM05D000306 ORTHO05D007657 2.3e-249 865.5 536 78.5
CDE04G1293 Ceratophyllum demersum HOM05D000306 ORTHO05D007657 1.6e-247 859.4 576 72.6
Hma1.2p1_1423F.1_g282590 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 3.0e-246 855.1 575 74.1
MBI16_g41815_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D007657 3.0e-246 855.1 578 73.2
FAN17G2452 Fragaria x ananassa HOM05D000306 ORTHO05D007657 9.8e-245 850.1 588 73.0
Aa31LG2G20220 Aethionema arabicum HOM05D000306 ORTHO05D007657 2.8e-244 848.6 530 79.6
Hund00645 Selenicereus undatus HOM05D000306 ORTHO05D007657 8.3e-244 847.0 656 65.4
Psat4g012000 Pisum sativum HOM05D000306 ORTHO05D007657 2.4e-243 845.5 470 89.4
Cfa013520 Carpinus fangiana HOM05D000306 ORTHO05D007657 9.2e-243 843.6 585 73.7
AUR62040301 Chenopodium quinoa HOM05D000306 ORTHO05D007657 1.6e-242 842.8 595 70.9
AUR62039995 Chenopodium quinoa HOM05D000306 ORTHO05D007657 2.0e-242 842.4 604 69.7
Duzib150G0020 Durio zibethinus HOM05D000306 ORTHO05D007657 3.8e-241 838.2 579 72.0
Atru.chr7.723 Acer truncatum HOM05D000306 ORTHO05D007657 1.1e-232 810.1 490 80.2
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 7.3e-232 807.4 621 66.8
Pp3c23_15560 Physcomitrium patens HOM05D000306 ORTHO05D007657 1.3e-228 796.6 574 66.2
Mapoly0003s0282 Marchantia polymorpha HOM05D000306 ORTHO05D007657 4.7e-223 778.1 585 63.4
TAR383G0632 Trochodendron aralioides HOM05D000306 ORTHO05D007657 6.2e-223 777.7 479 77.9
Thecc.09G168500 Theobroma cacao HOM05D000306 ORTHO05D007657 2.2e-220 769.2 462 80.3
AT4G30310 Arabidopsis thaliana HOM05D000306 ORTHO05D007657 5.4e-219 764.6 462 77.9
SGA_v2.0_scaffold69G23280 Striga asiatica HOM05D000306 ORTHO05D007657 6.0e-194 681.4 465 71.6
DCAR_020115 Daucus carota HOM05D000306 ORTHO05D007657 4.3e-192 675.2 440 75.5
Lj9A688T83 Lonicera japonica HOM05D000306 ORTHO05D007657 1.1e-190 670.6 465 71.8
CARHR238220 Cardamine hirsuta HOM05D000306 ORTHO05D007657 1.2e-181 640.6 399 76.4
Hma1.2p1_0342F.1_g130620 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 4.6e-178 628.6 604 58.9
AagrBONN_evm.TU.Sc2ySwM_117.626 Anthoceros agrestis HOM05D000306 ORTHO05D007657 8.7e-177 624.4 531 58.4
Hund00646 Selenicereus undatus HOM05D000306 ORTHO05D007657 1.1e-174 617.5 590 56.4
MELO3C004085.2 Cucumis melo HOM05D000306 ORTHO05D007657 7.0e-150 535.0 578 52.4
SMO239G0169 Selaginella moellendorffii HOM05D000306 ORTHO05D007657 7.0e-150 535.0 459 58.8
Os02g0177900 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D007657 5.9e-149 531.9 351 72.6
RcHm_v2.0_Chr4g0405011 Rosa chinensis HOM05D000306 ORTHO05D007657 5.3e-142 508.8 359 70.5
Nn8g40502 Nelumbo nucifera HOM05D000306 ORTHO05D007657 4.1e-134 482.6 288 80.9
SEGI_13713 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 3.5e-125 453.0 310 68.1
Nn2g14416 Nelumbo nucifera HOM05D000306 ORTHO05D007657 1.4e-118 431.0 238 85.3
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 8.0e-114 415.2 560 41.6
Aqoxy3G01085 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 4.1e-110 402.9 265 74.0
CSS0008880 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 5.1e-108 396.0 240 79.6
SHI02941 Sapria himalayana HOM05D000306 ORTHO05D007657 1.9e-99 367.5 243 72.4
Cfa026537 Carpinus fangiana HOM05D000306 ORTHO05D007657 5.8e-88 329.3 589 33.8
Aqoxy1G02891 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.7e-71 274.6 208 66.8
Aqoxy3G01524 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.1e-65 255.4 173 71.1
Lj9A687T77 Lonicera japonica HOM05D000306 ORTHO05D007657 3.0e-60 237.3 143 81.8
arahy.Tifrunner.gnm1.ann1.ID2I7H Arachis hypogaea HOM05D000306 ORTHO05D007657 1.0e-55 222.2 128 84.4
HanXRQChr09g0255811 Helianthus annuus HOM05D000306 ORTHO05D007657 1.0e-47 195.7 125 76.8
SEGI_25583 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 1.1e-46 192.2 134 69.4
Aqoxy1G03516 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 3.0e-44 184.1 189 57.1
MELO3C000682.2 Cucumis melo HOM05D000306 ORTHO05D007657 1.8e-41 174.9 129 63.6
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 4.2e-38 163.7 557 26.6
Aqoxy3G01525 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.7e-37 161.0 88 81.8
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 9.7e-35 152.5 561 24.6
MELO3C028573.2 Cucumis melo HOM05D000306 ORTHO05D007657 8.2e-34 149.4 104 67.3
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 1.9e-30 138.3 533 27.8
arahy.Tifrunner.gnm1.ann1.MK7H36 Arachis hypogaea HOM05D000306 ORTHO05D007657 2.7e-24 117.9 64 81.2
DCAR_020114 Daucus carota HOM05D000306 ORTHO05D007657 2.5e-22 111.3 82 70.7
SEGI_34135 Sequoiadendron giganteum HOM05D000306 ORTHO05D030075 4.2e-22 110.5 69 78.3
TPR.G18960 Trifolium pratense HOM05D000306 ORTHO05D007657 7.5e-19 99.8 53 90.6
arahy.Tifrunner.gnm1.ann1.QZT5UT Arachis hypogaea HOM05D000200 ORTHO05D010534 3.5e-16 90.9 50 86.0
CAN.G790.37 Capsicum annuum HOM05D000306 ORTHO05D007657 3.5e-16 90.9 53 77.4
RcHm_v2.0_Chr4g0405021 Rosa chinensis HOM05D000306 ORTHO05D030075 4.5e-16 90.5 59 74.6
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 1.7e-15 88.6 558 21.5
QL02p086401 Quercus lobata HOM05D000306 ORTHO05D007657 3.3e-14 84.3 82 56.1
MD07G1169000 Malus domestica HOM05D000306 ORTHO05D030075 4.2e-14 84.0 56 78.6
QL02p097096 Quercus lobata HOM05D000306 ORTHO05D007657 1.0e-12 79.3 82 54.9
TPR.G20440 Trifolium pratense HOM05D000306 ORTHO05D050985 1.0e-12 79.3 41 92.7
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 6.3e-10 70.1 558 20.4
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 3.2e-09 67.8 540 21.3
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 4.1e-09 67.4 569 21.3
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 7.0e-09 66.6 535 20.7
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 7.0e-09 66.6 540 21.5
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 1.2e-08 65.9 575 20.3
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 2.0e-08 65.1 552 21.0
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 5.9e-08 63.5 566 20.7
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 5.9e-08 63.5 535 22.6
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 1.0e-07 62.8 571 20.1
QL02p097186 Quercus lobata HOM05D000306 ORTHO05D030075 1.0e-07 62.8 42 71.4
SEGI_29302 Sequoiadendron giganteum HOM05D000306 ORTHO05D050985 1.0e-07 62.8 41 70.7
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 1.0e-07 62.8 539 20.2
BcaB02g07269 Brassica carinata HOM05D003206 ORTHO05D005207 1.3e-07 62.4 571 20.8
C02p37310 Brassica napus HOM05D003206 ORTHO05D005207 1.3e-07 62.4 566 20.7
BolC2t09741H Brassica oleracea HOM05D003206 ORTHO05D005207 1.3e-07 62.4 566 20.7
BraA07t30311Z Brassica rapa HOM05D003206 ORTHO05D005207 1.3e-07 62.4 568 21.0
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 1.7e-07 62.0 533 20.8
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 1.7e-07 62.0 539 20.2
BcaC08g45315 Brassica carinata HOM05D003206 ORTHO05D005207 1.7e-07 62.0 568 21.0
C06p29160 Brassica napus HOM05D003206 ORTHO05D005207 1.7e-07 62.0 568 21.0
BolC6t38080H Brassica oleracea HOM05D003206 ORTHO05D005207 1.7e-07 62.0 568 21.0
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 1.7e-07 62.0 539 20.6
A07p26680 Brassica napus HOM05D003206 ORTHO05D005207 2.3e-07 61.6 568 21.0
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 2.9e-07 61.2 533 21.0
QL02p097130 Quercus lobata HOM05D000306 ORTHO05D007657 2.9e-07 61.2 66 54.5
BcaB02g08684 Brassica carinata HOM05D003206 ORTHO05D005207 3.9e-07 60.8 566 20.8
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 3.9e-07 60.8 539 20.8
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 3.9e-07 60.8 560 21.1
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 5.0e-07 60.5 528 20.6
Carub.0002s2712 Capsella rubella HOM05D003206 ORTHO05D005207 6.6e-07 60.1 566 19.8
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 8.6e-07 59.7 540 20.2
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 8.6e-07 59.7 576 20.8
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 8.6e-07 59.7 566 20.8
A02p23540 Brassica napus HOM05D003206 ORTHO05D005207 1.1e-06 59.3 566 20.7
BraA02t07347Z Brassica rapa HOM05D003206 ORTHO05D005207 1.1e-06 59.3 566 20.7
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 1.1e-06 59.3 539 20.6
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 1.9e-06 58.5 586 20.3
BcaC03g15965 Brassica carinata HOM05D003206 ORTHO05D005207 3.3e-06 57.8 566 20.8
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 7.3e-06 56.6 548 21.4
Zm00001eb068580 Zea mays HOM05D003206 ORTHO05D005207 7.3e-06 56.6 530 20.9
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 9.5e-06 56.2 159 27.0


User provided reference genes

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