Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 0.0e+00 1468.0 705 100.0
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 0.0e+00 1148.7 706 78.3
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 1.4e-285 986.1 753 64.5
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 2.0e-284 982.2 598 77.6
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 1.2e-276 956.4 587 76.7
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 6.4e-222 774.6 693 55.6
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.9e-218 763.1 701 51.5
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 3.7e-185 652.5 357 85.7
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 9.0e-184 647.9 358 86.3
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 4.3e-178 629.0 361 82.3
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 4.8e-177 625.5 362 82.0
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 4.2e-173 612.5 319 90.3
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 7.2e-173 611.7 362 79.8
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 1.0e-171 607.8 318 89.6
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 1.5e-167 594.0 349 80.5
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 5.9e-167 592.0 355 80.3
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 1.1e-165 587.8 319 85.9
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 3.6e-164 582.8 319 85.0
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 6.7e-163 578.6 314 85.7
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 1.2e-159 567.8 314 81.5
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 3.3e-154 549.7 322 77.6
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 8.2e-153 545.0 319 81.8
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.4e-152 544.3 316 77.5
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 2.4e-152 543.5 316 77.5
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 4.1e-152 542.7 349 71.3
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 9.1e-152 541.6 327 75.5
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 4.5e-151 539.3 324 74.4
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.3e-150 537.7 322 74.2
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 2.9e-150 536.6 313 78.3
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.9e-150 536.6 322 73.9
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 8.5e-150 535.0 322 74.2
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 8.5e-150 535.0 322 74.2
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 8.5e-150 535.0 322 76.1
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 1.5e-149 534.3 321 77.9
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 1.5e-149 534.3 333 73.6
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 1.9e-149 533.9 316 76.9
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 1.9e-149 533.9 313 75.7
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 3.2e-149 533.1 321 75.4
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 9.4e-149 531.6 316 79.1
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 1.2e-148 531.2 312 76.0
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 2.7e-148 530.0 309 76.7
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 3.6e-148 529.6 316 77.2
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.4e-147 527.7 328 72.6
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 3.0e-147 526.6 316 78.2
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 3.0e-147 526.6 319 77.4
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.0e-147 526.2 316 76.6
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 5.2e-147 525.8 316 75.0
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 6.7e-147 525.4 316 74.7
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 8.8e-147 525.0 312 75.6
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 1.2e-146 524.6 327 73.1
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 3.3e-146 523.1 316 74.7
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 4.4e-146 522.7 312 77.9
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 9.7e-146 521.5 319 76.2
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.3e-145 521.2 317 75.1
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 1.3e-145 521.2 319 74.9
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 2.2e-145 520.4 320 76.6
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 2.2e-145 520.4 320 76.6
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 2.2e-145 520.4 313 76.7
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 3.7e-145 519.6 306 77.1
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 6.3e-145 518.8 331 70.4
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 6.3e-145 518.8 324 71.3
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 8.2e-145 518.5 318 73.6
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 8.2e-145 518.5 310 74.8
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.1e-144 518.1 353 67.4
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 1.1e-144 518.1 311 75.9
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 1.4e-144 517.7 312 74.4
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 1.4e-144 517.7 310 76.8
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 1.4e-144 517.7 345 68.1
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 1.4e-144 517.7 316 73.1
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 1.8e-144 517.3 311 75.2
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 2.4e-144 516.9 315 75.6
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 2.4e-144 516.9 312 72.1
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 5.3e-144 515.8 310 74.2
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 1.2e-143 514.6 308 75.3
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.2e-143 514.6 309 74.8
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 1.2e-143 514.6 314 74.8
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.7e-143 513.5 331 71.9
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 7.7e-143 511.9 305 77.4
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 1.0e-142 511.5 309 74.4
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 1.3e-142 511.1 310 73.9
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 1.7e-142 510.8 310 72.3
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 2.2e-142 510.4 309 72.2
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 5.0e-142 509.2 317 74.8
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 5.0e-142 509.2 310 75.8
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 8.5e-142 508.4 307 75.6
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 8.5e-142 508.4 309 74.1
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 1.5e-141 507.7 309 74.8
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 1.9e-141 507.3 317 74.8
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 1.6e-140 504.2 309 75.1
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 1.6e-140 504.2 314 73.2
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 2.1e-140 503.8 310 72.3
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 6.1e-140 502.3 310 75.2
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 6.1e-140 502.3 310 75.2
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 8.0e-140 501.9 314 72.6
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 5.7e-138 495.7 309 71.5
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.8e-136 490.7 309 72.8
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 2.4e-136 490.3 308 71.8
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 5.4e-136 489.2 318 71.1
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 2.3e-131 473.8 306 72.9
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 8.8e-131 471.9 312 71.8
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 2.0e-130 470.7 309 67.6
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 5.7e-130 469.2 307 69.1
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 1.2e-122 444.9 302 65.2
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 2.6e-122 443.7 313 62.9
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 4.4e-122 443.0 312 67.0
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 4.4e-122 443.0 313 67.4
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 6.4e-121 439.1 309 67.0
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 3.2e-120 436.8 305 68.2
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 7.8e-119 432.2 307 66.4
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 1.5e-117 427.9 306 67.0
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 5.6e-117 426.0 302 62.9
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.8e-116 423.7 451 49.0
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 6.2e-116 422.5 274 69.3
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 8.0e-116 422.2 339 61.7
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 8.0e-116 422.2 339 61.7
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 2.2e-113 414.1 284 66.5
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 7.0e-112 409.1 277 68.2
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 9.2e-112 408.7 312 58.3
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.3e-105 388.3 310 58.1
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 2.9e-97 360.5 176 92.0
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 1.9e-96 357.8 212 75.5
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 7.1e-96 355.9 182 92.3
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 5.2e-91 339.7 201 78.1
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 3.8e-89 333.6 249 65.5
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 4.9e-89 333.2 199 74.4
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 7.1e-88 329.3 214 69.6
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 1.7e-81 308.1 175 80.0
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 2.9e-81 307.4 302 49.3
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.7e-65 255.0 305 47.9
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 3.0e-46 191.0 208 47.1
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 5.9e-42 176.8 87 88.5
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 2.2e-41 174.9 102 72.5
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.4e-38 165.6 99 74.7
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 6.1e-31 140.2 94 67.0
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 2.2e-28 131.7 78 70.5
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.1e-27 127.5 73 79.5
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 7.0e-27 126.7 346 29.2
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 9.1e-27 126.3 91 62.6
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 3.5e-26 124.4 311 29.3
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 5.9e-26 123.6 79 70.9
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 7.0e-19 100.1 62 77.4
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 1.8e-14 85.5 161 33.5
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 5.2e-14 84.0 312 26.0
arahy.Tifrunner.gnm1.ann1.6LUE8P Arachis hypogaea HOM05D005241 ORTHO05D005862 1.6e-10 72.4 81 51.9
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.7e-09 68.9 50 58.0
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 6.6e-09 67.0 44 70.5
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 1.1e-08 66.2 41 65.9
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 6.8e-06 57.0 43 67.4


User provided reference genes

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