Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 4.7e-52 207.6 107 100.0
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 8.1e-44 180.3 104 86.5
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 2.4e-43 178.7 104 85.6
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 4.0e-43 177.9 107 86.9
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 8.9e-43 176.8 102 84.3
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 2.6e-42 175.3 107 85.0
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 2.6e-42 175.3 107 82.2
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 7.6e-42 173.7 107 78.5
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 2.2e-41 172.2 107 80.4
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 3.8e-41 171.4 107 79.4
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 6.4e-41 170.6 104 80.8
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 8.4e-41 170.2 104 79.8
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 1.1e-40 169.9 104 79.8
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 1.9e-40 169.1 104 80.8
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 2.4e-40 168.7 104 78.8
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 2.4e-40 168.7 107 77.6
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 4.1e-40 167.9 104 80.8
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 4.1e-40 167.9 104 77.9
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 5.4e-40 167.5 104 80.8
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 7.1e-40 167.2 104 75.0
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 9.2e-40 166.8 104 82.7
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.6e-39 166.0 104 78.8
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.6e-39 166.0 104 78.8
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 4.6e-39 164.5 102 80.4
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 4.6e-39 164.5 102 79.4
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 6.0e-39 164.1 104 78.8
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 7.8e-39 163.7 104 77.9
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 1.3e-38 162.9 102 79.4
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.3e-38 162.9 105 78.1
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.3e-38 162.9 105 78.1
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 1.3e-38 162.9 105 78.1
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.3e-38 162.9 104 76.9
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 1.3e-38 162.9 104 75.0
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 2.3e-38 162.2 102 77.5
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 5.1e-38 161.0 105 75.2
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 5.1e-38 161.0 101 79.2
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 6.6e-38 160.6 104 77.9
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 6.6e-38 160.6 104 76.0
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 8.6e-38 160.2 104 75.0
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 1.1e-37 159.8 108 75.0
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 2.5e-37 158.7 104 76.9
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 3.3e-37 158.3 102 75.5
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 5.6e-37 157.5 104 76.0
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 5.6e-37 157.5 104 76.0
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 5.6e-37 157.5 104 76.0
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 7.3e-37 157.1 95 77.9
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 9.6e-37 156.8 102 74.5
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 9.6e-37 156.8 104 72.1
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 9.6e-37 156.8 104 73.1
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 1.2e-36 156.4 104 75.0
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 1.6e-36 156.0 99 73.7
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 1.6e-36 156.0 104 76.0
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 2.1e-36 155.6 102 74.5
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 2.1e-36 155.6 102 74.5
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 2.1e-36 155.6 102 74.5
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 2.1e-36 155.6 101 76.2
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 2.8e-36 155.2 107 71.0
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 3.6e-36 154.8 104 71.2
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 4.7e-36 154.5 104 70.2
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 6.2e-36 154.1 104 70.2
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 1.1e-35 153.3 104 71.2
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.1e-35 153.3 104 71.2
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.1e-35 153.3 104 71.2
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.1e-35 153.3 104 71.2
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 1.1e-35 153.3 104 74.0
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 1.1e-35 153.3 102 75.5
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.4e-35 152.9 104 70.2
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 1.8e-35 152.5 108 73.1
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 2.4e-35 152.1 104 70.2
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 3.1e-35 151.8 103 74.8
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 3.1e-35 151.8 103 74.8
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 3.1e-35 151.8 104 73.1
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 5.2e-35 151.0 104 73.1
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 5.2e-35 151.0 104 73.1
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 9.0e-35 150.2 99 73.7
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 1.2e-34 149.8 96 78.1
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.2e-34 149.8 99 71.7
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 1.5e-34 149.4 99 71.7
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 2.0e-34 149.1 104 70.2
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.4e-34 148.3 107 68.2
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.4e-34 148.3 107 68.2
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 3.4e-34 148.3 105 68.6
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 3.4e-34 148.3 106 65.1
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 3.4e-34 148.3 95 74.7
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 3.4e-34 148.3 107 70.1
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 4.4e-34 147.9 98 70.4
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 4.4e-34 147.9 102 69.6
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 4.4e-34 147.9 104 71.2
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 4.4e-34 147.9 105 68.6
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 7.6e-34 147.1 104 69.2
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 9.9e-34 146.7 102 68.6
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 1.3e-33 146.4 99 70.7
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 1.3e-33 146.4 100 71.0
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 1.7e-33 146.0 96 72.9
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 3.8e-33 144.8 106 66.0
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 3.8e-33 144.8 104 68.3
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 6.4e-33 144.1 106 64.2
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.4e-32 142.9 123 62.6
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 1.9e-32 142.5 105 69.5
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.4e-32 142.1 106 65.1
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 2.4e-32 142.1 103 68.0
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 2.4e-32 142.1 103 68.0
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 2.4e-32 142.1 103 68.0
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 2.4e-32 142.1 103 68.0
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 3.2e-32 141.7 107 65.4
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 7.1e-32 140.6 104 66.3
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 9.3e-32 140.2 95 67.4
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 9.3e-32 140.2 95 67.4
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 1.2e-31 139.8 106 66.0
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 1.2e-31 139.8 102 65.7
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 6.0e-31 137.5 98 65.3
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 1.7e-30 136.0 103 65.0
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 3.0e-30 135.2 104 62.5
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 8.7e-30 133.7 106 63.2
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 3.3e-29 131.7 99 64.6
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 9.6e-29 130.2 102 60.8
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 1.3e-28 129.8 112 61.6
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 2.4e-27 125.6 93 69.9
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 6.9e-27 124.0 115 58.3
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 2.0e-26 122.5 109 59.6
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 7.6e-26 120.6 107 60.7
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 1.9e-24 115.9 98 61.2
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 1.9e-24 115.9 73 75.3
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 4.2e-24 114.8 97 59.8
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 4.6e-23 111.3 78 70.5
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 1.8e-22 109.4 57 91.2
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 7.4e-21 104.0 112 53.6
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 1.3e-20 103.2 57 86.0
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 3.4e-18 95.1 101 46.5
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 5.8e-18 94.4 85 52.9
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 1.3e-17 93.2 104 40.4
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 1.7e-17 92.8 82 57.3
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 6.4e-17 90.9 115 44.3
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.1e-16 90.1 108 44.4
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 1.4e-16 89.7 92 48.9
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 3.9e-14 81.6 93 45.2
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 5.3e-11 71.2 108 38.0
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 1.7e-09 66.2 108 33.3
Medtr7g017820 Medicago truncatula HOM05D004690 ORTHO05D005527 2.5e-08 62.4 33 93.9


User provided reference genes

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