Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21139_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 5.3e-176 620.9 314 100.0
Ca_21144_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 5.3e-176 620.9 314 100.0
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 3.1e-128 462.2 314 79.0
Psat0s3930g0120 Pisum sativum HOM05D007038 ORTHO05D008893 5.9e-127 458.0 315 77.8
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 1.2e-124 450.3 316 77.2
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 1.1e-120 437.2 311 74.0
Phvul.003G155000 Phaseolus vulgaris HOM05D007038 ORTHO05D008893 3.1e-120 435.6 314 72.3
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 5.9e-119 431.4 311 72.3
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 1.3e-118 430.3 312 73.7
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 8.0e-116 421.0 314 72.3
arahy.Tifrunner.gnm1.ann1.ULM9BE Arachis hypogaea HOM05D007038 ORTHO05D008893 5.0e-110 401.7 311 71.1
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 8.5e-110 401.0 311 71.1
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 2.1e-92 343.2 310 64.8
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 6.4e-89 331.6 306 60.5
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 6.4e-89 331.6 305 58.4
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 2.4e-88 329.7 303 59.4
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 2.0e-87 326.6 310 58.4
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 2.7e-87 326.2 306 60.1
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 4.6e-87 325.5 304 59.9
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 8.6e-86 321.2 305 56.7
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 9.5e-85 317.8 305 56.4
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.6e-84 317.0 299 57.2
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 6.2e-84 315.1 299 57.2
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 6.2e-84 315.1 303 58.1
CANSAT11G2324 Cannabis sativa HOM05D007038 ORTHO05D008893 8.1e-84 314.7 309 57.0
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.3e-83 313.2 326 53.7
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 4.4e-82 308.9 301 56.8
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.4e-80 303.9 330 52.4
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 1.3e-78 297.4 311 53.1
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 1.7e-78 297.0 331 50.8
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 6.6e-78 295.0 335 51.3
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 6.6e-78 295.0 301 53.8
Ciclev10009099m.g Citrus clementina HOM05D007038 ORTHO05D008893 1.9e-77 293.5 283 55.8
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 1.1e-75 287.7 306 51.6
Dinv43261 Davidia involucrata HOM05D007038 ORTHO05D008893 1.1e-75 287.7 306 51.6
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 1.4e-75 287.3 305 54.4
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 5.2e-75 285.4 302 51.3
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 6.8e-75 285.0 305 53.1
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 6.8e-75 285.0 309 52.4
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 1.2e-74 284.3 279 55.9
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 4.4e-74 282.3 302 52.6
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 5.8e-74 282.0 307 52.1
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 2.4e-72 276.6 311 50.5
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 5.4e-72 275.4 372 43.8
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 7.1e-72 275.0 353 47.3
Thecc.09G151200 Theobroma cacao HOM05D007038 ORTHO05D008893 1.7e-70 270.4 295 53.6
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 4.3e-69 265.8 370 44.3
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 2.1e-68 263.5 309 50.8
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 8.1e-68 261.5 278 54.3
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 1.5e-66 257.3 345 45.2
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 1.5e-66 257.3 330 49.1
vmacro06062 Vaccinium macrocarpon HOM05D007038 ORTHO05D008893 1.5e-66 257.3 385 41.3
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 2.6e-66 256.5 299 47.5
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 2.2e-65 253.4 305 47.9
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 2.2e-65 253.4 305 47.9
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 2.2e-65 253.4 306 48.4
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 6.4e-65 251.9 256 52.3
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 1.1e-64 251.1 353 43.1
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 1.9e-64 250.4 317 48.3
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 1.9e-64 250.4 353 44.2
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 4.2e-64 249.2 300 48.0
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 2.1e-63 246.9 275 51.6
Aqoxy7G03364 Aquilegia oxysepala HOM05D007038 ORTHO05D008893 6.0e-63 245.4 307 46.9
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.0e-62 244.6 285 51.6
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 3.9e-62 242.7 312 47.1
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 1.1e-61 241.1 323 45.5
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 1.1e-61 241.1 302 49.0
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 1.9e-61 240.4 301 46.5
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 6.2e-60 235.3 309 47.6
C09p49760 Brassica napus HOM05D007038 ORTHO05D008893 6.9e-59 231.9 334 43.7
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 1.5e-58 230.7 337 43.6
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 8.4e-57 224.9 356 42.1
BraA10t43606Z Brassica rapa HOM05D007038 ORTHO05D008893 8.4e-57 224.9 346 42.5
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 3.2e-56 223.0 331 44.1
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 2.7e-55 219.9 256 49.6
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 6.0e-55 218.8 340 43.5
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 6.0e-55 218.8 302 42.7
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 1.7e-54 217.2 306 43.8
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 1.7e-54 217.2 328 42.1
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 2.3e-54 216.9 309 44.0
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 5.1e-54 215.7 306 42.8
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 1.5e-53 214.2 263 47.1
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 1.5e-53 214.2 331 42.0
BolC9t57827H Brassica oleracea HOM05D007038 ORTHO05D008893 7.4e-53 211.8 386 38.3
Os08g0555800 Oryza sativa ssp. japonica HOM05D007038 ORTHO05D008893 9.6e-53 211.5 300 44.3
Zm00001eb180360 Zea mays HOM05D007038 ORTHO05D008893 1.6e-52 210.7 297 44.4
Gohir.D13G211300 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.4e-51 207.6 277 45.5
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 1.7e-49 200.7 249 47.8
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 8.7e-46 188.3 257 43.2
CsaV3_2G007610 Cucumis sativus L. HOM05D007038 ORTHO05D008893 7.4e-45 185.3 280 43.2
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 1.1e-43 181.4 234 46.6
Solyc07g005800.2 Solanum lycopersicum HOM05D007038 ORTHO05D008893 1.5e-37 161.0 162 54.3
Peaxi162Scf00401g00326 Petunia axillaris HOM05D007038 ORTHO05D008893 1.4e-35 154.5 173 51.4
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 2.9e-33 146.7 297 35.4
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 1.1e-32 144.8 308 35.7
Potri.006G182201 Populus trichocarpa HOM05D007038 ORTHO05D008893 1.1e-32 144.8 130 58.5
Nitab4.5_0002320g0050 Nicotiana tabacum HOM05D001418 ORTHO05D002038 2.2e-28 130.6 374 32.1
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 1.4e-24 117.9 305 31.8
Solyc07g005790.4 Solanum lycopersicum HOM05D007038 ORTHO05D008893 3.2e-24 116.7 138 47.1
SHI02845 Sapria himalayana HOM05D007038 ORTHO05D008893 9.4e-24 115.2 144 48.6
Potri.006G182301 Populus trichocarpa HOM05D007038 ORTHO05D008893 2.8e-20 103.6 112 47.3
CDE02G0638 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 5.0e-17 92.8 154 40.3
PSO782G2459 Papaver somniferum HOM05D007038 ORTHO05D008893 5.0e-17 92.8 109 49.5
CDE05G1617 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 6.5e-17 92.4 151 39.1
CAN.G160.33 Capsicum annuum HOM05D007038 ORTHO05D008893 3.6e-15 86.7 100 47.0
Peaxi162Scf00401g00327 Petunia axillaris HOM05D007038 ORTHO05D008893 1.3e-12 78.2 107 43.0
HPP92_020432 Vanilla planifolia HOM05D000367 ORTHO05D008893 4.5e-10 69.7 136 38.2
Mapoly0056s0109 Marchantia polymorpha HOM05D007038 ORTHO05D008893 2.3e-06 57.4 165 24.8


User provided reference genes

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