Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21135_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 7.9e-201 703.7 403 100.0
Ca_21137_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 7.9e-201 703.7 403 100.0
TPR.G24886 Trifolium pratense HOM05D003426 ORTHO05D003816 2.7e-76 290.0 469 45.8
Psat4g009920 Pisum sativum HOM05D003426 ORTHO05D003816 2.6e-74 283.5 443 46.3
Medtr4g130690 Medicago truncatula HOM05D003426 ORTHO05D003816 1.9e-69 267.3 490 45.1
Medtr4g129690 Medicago truncatula HOM05D003426 ORTHO05D003816 1.2e-58 231.5 416 45.7
Psat4g009680 Pisum sativum HOM05D003426 ORTHO05D003816 3.5e-55 219.9 299 47.5
Psat6g228520 Pisum sativum HOM05D003426 ORTHO05D003816 1.5e-50 204.5 325 43.7
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 1.3e-49 201.4 426 37.3
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 6.8e-43 179.1 425 34.8
Lj4g0000658 Lotus japonicus HOM05D003426 ORTHO05D003816 1.5e-42 177.9 399 38.6
Psat4g010040 Pisum sativum HOM05D003426 ORTHO05D003816 2.8e-41 173.7 248 50.4
Lalb_Chr13g0300811 Lupinus albus HOM05D003426 ORTHO05D003816 4.9e-41 172.9 592 35.1
Lalb_Chr12g0198761 Lupinus albus HOM05D003426 ORTHO05D003816 1.1e-40 171.8 433 33.9
Glyma.02G205001 Glycine max HOM05D003426 ORTHO05D003816 3.5e-39 166.8 405 34.6
COL.COLO4_18823 Corchorus olitorius HOM05D003426 ORTHO05D003816 6.6e-38 162.5 411 34.3
MD15G1151400 Malus domestica HOM05D003426 ORTHO05D003816 7.3e-37 159.1 443 32.5
Thecc.09G028500 Theobroma cacao HOM05D003426 ORTHO05D003816 9.5e-37 158.7 401 33.2
arahy.Tifrunner.gnm1.ann1.N5DK6E Arachis hypogaea HOM05D003426 ORTHO05D003816 8.0e-36 155.6 368 35.1
Medtr3g045840 Medicago truncatula HOM05D003426 ORTHO05D003816 1.0e-35 155.2 242 49.2
arahy.Tifrunner.gnm1.ann1.H6N2T4 Arachis hypogaea HOM05D003426 ORTHO05D003816 3.0e-35 153.7 416 33.7
TWI34G0373 Tripterygium wilfordii HOM05D003426 ORTHO05D003816 3.0e-35 153.7 432 33.6
Duzib168G0934 Durio zibethinus HOM05D003426 ORTHO05D003816 3.4e-34 150.2 443 31.4
Haze_19169 Corylus avellana HOM05D003426 ORTHO05D003816 4.4e-34 149.8 490 29.6
CiPaw.15G166800 Carya illinoinensis HOM05D003426 ORTHO05D003816 9.8e-34 148.7 417 30.7
Sabra06G0139100 Salix brachista HOM05D003426 ORTHO05D003816 1.3e-33 148.3 545 28.4
Lj4g0006994 Lotus japonicus HOM05D003426 ORTHO05D003816 4.9e-33 146.4 412 33.5
Dinv43256 Davidia involucrata HOM05D003426 ORTHO05D003816 8.3e-33 145.6 452 30.8
MD02G1006400 Malus domestica HOM05D003426 ORTHO05D003816 3.2e-32 143.7 395 33.4
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 3.5e-31 140.2 417 31.9
Glyma.17G072900 Glycine max HOM05D003426 ORTHO05D003816 6.0e-31 139.4 410 31.5
Glyma.17G073000 Glycine max HOM05D003426 ORTHO05D003816 1.7e-30 137.9 409 30.8
Lj9C718T11 Lonicera japonica HOM05D003426 ORTHO05D003816 3.0e-30 137.1 467 29.8
MD17G1259500 Malus domestica HOM05D003426 ORTHO05D003816 5.0e-30 136.3 430 30.5
MSTRG.6152 Avicennia marina HOM05D003426 ORTHO05D003816 1.1e-29 135.2 397 31.2
Manes.06G035400 Manihot esculenta HOM05D003426 ORTHO05D003816 1.1e-29 135.2 433 32.8
MSTRG.26266 Avicennia marina HOM05D003426 ORTHO05D003816 7.3e-29 132.5 363 31.4
Hma1.2p1_0028F.1_g017630 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 7.3e-29 132.5 445 29.4
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 1.2e-28 131.7 456 29.8
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 1.6e-28 131.3 369 30.6
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 2.8e-28 130.6 400 31.2
vmacro16795 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 3.6e-28 130.2 401 30.7
Peaxi162Scf00401g00417 Petunia axillaris HOM05D003426 ORTHO05D003816 4.7e-28 129.8 417 29.3
Manes.14G144800 Manihot esculenta HOM05D003426 ORTHO05D003816 8.0e-28 129.0 437 33.0
Actinidia23556 Actinidia chinensis HOM05D003426 ORTHO05D003816 1.1e-27 128.6 444 30.4
Dinv42844 Davidia involucrata HOM05D003426 ORTHO05D003816 1.4e-27 128.3 363 30.9
Oeu026460.1 Olea europaea HOM05D003426 ORTHO05D003816 6.8e-27 125.9 405 30.6
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 8.9e-27 125.6 440 27.3
Rhsim01G0028100 Rhododendron simsii HOM05D003426 ORTHO05D003816 4.9e-25 119.8 419 28.9
Oeu021305.2 Olea europaea HOM05D003426 ORTHO05D003816 8.3e-25 119.0 371 31.5
CSS0024837 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 1.1e-24 118.6 268 34.0
Glyma.17G072650 Glycine max HOM05D003426 ORTHO05D003816 1.9e-24 117.9 185 45.9
Gohir.A07G027500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 2.4e-24 117.5 384 29.9
CANSAT11G1136 Cannabis sativa HOM05D003426 ORTHO05D003816 4.1e-24 116.7 404 29.5
CiPaw.16G108300 Carya illinoinensis HOM05D003426 ORTHO05D003816 4.1e-24 116.7 478 29.9
Prupe.7G264500 Prunus persica HOM05D003426 ORTHO05D003816 5.4e-24 116.3 359 33.1
TAR626G1511 Trochodendron aralioides HOM05D003426 ORTHO05D003816 7.0e-24 115.9 357 30.5
CAN.G160.49 Capsicum annuum HOM05D003426 ORTHO05D003816 2.1e-23 114.4 415 27.2
AUR62025323 Chenopodium quinoa HOM05D003426 ORTHO05D003816 2.1e-23 114.4 462 26.8
AUR62028339 Chenopodium quinoa HOM05D003426 ORTHO05D003816 2.1e-23 114.4 462 26.2
Gorai.001G032900 Gossypium raimondii HOM05D003426 ORTHO05D003816 2.7e-23 114.0 384 29.4
PGSC0003DMG400011187 Solanum tuberosum HOM05D003426 ORTHO05D003816 3.5e-23 113.6 409 30.1
Glyma.17G072800 Glycine max HOM05D003426 ORTHO05D003816 7.8e-23 112.5 285 35.4
Sed0021282 Sechium edule HOM05D003426 ORTHO05D003816 7.8e-23 112.5 401 29.2
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 1.7e-22 111.3 350 30.6
Gohir.D07G031500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 1.7e-22 111.3 384 29.2
EL10Ac8g18943 Beta vulgaris HOM05D003426 ORTHO05D003816 6.6e-22 109.4 392 30.9
Solyc07g005700.3 Solanum lycopersicum HOM05D003426 ORTHO05D003816 1.1e-21 108.6 424 29.0
Glyma.17G184200 Glycine max HOM05D003426 ORTHO05D003816 1.5e-21 108.2 410 27.3
Sopen07g001810 Solanum pennellii HOM05D003426 ORTHO05D003816 2.5e-21 107.5 424 28.8
HanXRQChr05g0144001 Helianthus annuus HOM05D003426 ORTHO05D003816 3.3e-21 107.1 348 31.9
Phvul.003G155200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 9.5e-21 105.5 371 29.9
Phvul.010G050200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 1.6e-20 104.8 216 38.9
Aqoxy7G03377 Aquilegia oxysepala HOM05D003426 ORTHO05D003816 2.8e-20 104.0 369 29.8
Nitab4.5_0001571g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 4.7e-20 103.2 377 27.1
MELO3C010212.2 Cucumis melo HOM05D003426 ORTHO05D003816 6.2e-20 102.8 240 35.0
Glyma.17G193101 Glycine max HOM05D003426 ORTHO05D003816 1.1e-19 102.1 192 39.6
FAN26G0769 Fragaria x ananassa HOM05D003426 ORTHO05D003816 1.4e-19 101.7 380 29.5
TAR636G1172 Trochodendron aralioides HOM05D003426 ORTHO05D003816 1.4e-19 101.7 275 34.5
FAN23G3106 Fragaria x ananassa HOM05D003426 ORTHO05D003816 2.3e-19 100.9 424 26.9
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 2.3e-19 100.9 380 28.7
PGR142G3879 Punica granatum HOM05D003426 ORTHO05D003816 4.0e-19 100.1 394 29.2
FAN28G0527 Fragaria x ananassa HOM05D003426 ORTHO05D003816 6.8e-19 99.4 350 29.7
ClCG06G012490 Citrullus lanatus HOM05D003426 ORTHO05D003816 8.9e-19 99.0 229 35.8
SGA_v2.0_scaffold265G46098 Striga asiatica HOM05D003426 ORTHO05D003816 8.9e-19 99.0 200 36.5
ClCG02G014420 Citrullus lanatus HOM05D003426 ORTHO05D003816 7.5e-18 95.9 427 27.4
FvH4_1g00800 Fragaria vesca HOM05D003426 ORTHO05D003816 7.5e-18 95.9 374 27.8
Lsat_1_v5_gn_8_63641 Lactuca sativa HOM05D003426 ORTHO05D003816 1.3e-17 95.1 376 26.1
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 1.3e-17 95.1 339 29.5
Sc14g0000930 Simmondsia chinensis HOM05D003426 ORTHO05D003816 2.2e-17 94.4 392 29.1
Actinidia38667 Actinidia chinensis HOM05D003426 ORTHO05D003816 3.7e-17 93.6 258 32.2
Nitab4.5_0005869g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 6.4e-17 92.8 260 30.0
Nn8g39953 Nelumbo nucifera HOM05D003426 ORTHO05D003816 1.9e-16 91.3 426 29.1
Hma1.2p1_2680F.1_g326790 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 4.1e-16 90.1 257 29.2
Glyma.17G072700 Glycine max HOM05D003426 ORTHO05D003816 7.1e-16 89.4 161 44.1
RcHm_v2.0_Chr2g0085511 Rosa chinensis HOM05D003426 ORTHO05D003816 7.1e-16 89.4 453 27.2
Hund08921 Selenicereus undatus HOM05D003426 ORTHO05D003816 1.2e-15 88.6 455 27.9
ECA236G2514 Erigeron canadensis HOM05D003426 ORTHO05D003816 6.0e-15 86.3 391 27.1
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 2.3e-14 84.3 420 28.1
PSO561G0041 Papaver somniferum HOM05D003426 ORTHO05D003816 5.1e-14 83.2 178 36.5
EL10Ac2g02492 Beta vulgaris HOM05D016866 ORTHO05D003816 8.6e-14 82.4 189 38.1
CsaV3_2G007580 Cucumis sativus L. HOM05D003426 ORTHO05D003816 8.6e-14 82.4 377 28.4
PSO111G0039 Papaver somniferum HOM05D003426 ORTHO05D003816 8.6e-14 82.4 171 38.0
Rhsim03G0257700 Rhododendron simsii HOM05D003426 ORTHO05D003816 8.6e-14 82.4 189 38.1
PGSC0003DMG400037110 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.9e-13 81.3 232 28.9
SalBow1G0569 Salvia bowleyana HOM05D003426 ORTHO05D003816 3.3e-13 80.5 386 26.4
MELO3C004128.2 Cucumis melo HOM05D003426 ORTHO05D003816 5.6e-13 79.7 362 26.8
Dinv08190 Davidia involucrata HOM05D003426 ORTHO05D003816 5.6e-13 79.7 364 26.6
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 9.5e-13 79.0 438 25.1
Solyc10g048140.2 Solanum lycopersicum HOM05D003426 ORTHO05D003816 9.5e-13 79.0 288 28.8
Thhalv10000536m.g Eutrema salsugineum HOM05D012895 ORTHO05D014428 1.2e-12 78.6 399 26.3
MBI14_g30955_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 1.6e-12 78.2 396 28.5
Rhsim02G0212600 Rhododendron simsii HOM05D003426 ORTHO05D003816 2.8e-12 77.4 196 33.7
Lj7P460T26 Lonicera japonica HOM05D003426 ORTHO05D003816 8.1e-12 75.9 223 30.5
QL02p093542 Quercus lobata HOM05D001418 ORTHO05D002038 1.4e-11 75.1 87 48.3
Actinidia38316 Actinidia chinensis HOM05D003426 ORTHO05D003816 3.1e-11 73.9 440 24.5
C04p53570 Brassica napus HOM05D012895 ORTHO05D014428 3.1e-11 73.9 404 27.0
TAR625G0621 Trochodendron aralioides HOM05D003426 ORTHO05D003816 4.0e-11 73.6 200 34.0
AUR62024799 Chenopodium quinoa HOM05D016866 ORTHO05D003816 5.2e-11 73.2 419 24.3
Nitab4.5_0000123g0610 Nicotiana tabacum HOM05D003426 ORTHO05D007302 5.2e-11 73.2 240 28.3
vmacro06066 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 5.2e-11 73.2 242 30.6
Dinv17422 Davidia involucrata HOM05D003426 ORTHO05D003816 6.8e-11 72.8 180 33.3
CARHR184730 Cardamine hirsuta HOM05D012895 ORTHO05D014428 8.9e-11 72.4 381 27.0
Sopen10g019310 Solanum pennellii HOM05D003426 ORTHO05D003816 1.2e-10 72.0 281 27.0
Migut.J01365 Erythranthe guttata HOM05D003426 ORTHO05D003816 3.4e-10 70.5 313 25.6
PGSC0003DMG400036381 Solanum tuberosum HOM05D003426 ORTHO05D003816 9.9e-10 68.9 346 26.3
BcaC02g08512 Brassica carinata HOM05D012895 ORTHO05D014428 1.3e-09 68.6 404 25.2
BolC4t26912H Brassica oleracea HOM05D012895 ORTHO05D014428 1.3e-09 68.6 404 25.2
VMungo1215G0444 Vigna mungo HOM05D003426 ORTHO05D003816 1.3e-09 68.6 428 25.7
AUR62032422 Chenopodium quinoa HOM05D016866 ORTHO05D003816 1.7e-09 68.2 270 31.9
Sed0007563 Sechium edule HOM05D003426 ORTHO05D003816 1.7e-09 68.2 349 25.8
Actinidia10526 Actinidia chinensis HOM05D003426 ORTHO05D003816 2.2e-09 67.8 213 29.6
PGSC0003DMG400040189 Solanum tuberosum HOM05D003426 ORTHO05D003816 2.9e-09 67.4 270 25.6
Sp4g02940 Schrenkiella parvula HOM05D012895 ORTHO05D014428 3.8e-09 67.0 382 24.6
PGSC0003DMG400043134 Solanum tuberosum HOM05D003426 ORTHO05D003816 3.8e-09 67.0 82 48.8
A04p18340 Brassica napus HOM05D012895 ORTHO05D014428 4.9e-09 66.6 403 26.3
BraA04t17445Z Brassica rapa HOM05D012895 ORTHO05D014428 4.9e-09 66.6 403 26.3
DCAR_019401 Daucus carota HOM05D003426 ORTHO05D003816 4.9e-09 66.6 237 26.6
BcaB06g27961 Brassica carinata HOM05D012895 ORTHO05D014428 1.1e-08 65.5 244 28.7
Nitab4.5_0011705g0030 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.1e-08 65.5 94 42.6
Lsat_1_v5_gn_5_89740 Lactuca sativa HOM05D003426 ORTHO05D003816 1.9e-08 64.7 160 35.0
PGSC0003DMG400038550 Solanum tuberosum HOM05D003426 ORTHO05D003816 2.4e-08 64.3 95 44.2
CiPaw.16G108200 Carya illinoinensis HOM05D003426 ORTHO05D003816 4.1e-08 63.5 228 31.6
HanXRQChr10g0313661 Helianthus annuus HOM05D003426 ORTHO05D003816 4.1e-08 63.5 213 23.9
PSO675G7028 Papaver somniferum HOM05D003426 ORTHO05D003816 4.1e-08 63.5 168 33.3
Sc18g0002970 Simmondsia chinensis HOM05D003426 ORTHO05D003816 7.1e-08 62.8 240 23.3
CSS0027727 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 1.6e-07 61.6 99 42.4
Lsat_1_v5_gn_5_90221 Lactuca sativa HOM05D029854 ORTHO05D003816 1.6e-07 61.6 207 29.0
AT2G24030 Arabidopsis thaliana HOM05D012895 ORTHO05D014428 2.7e-07 60.8 419 22.9
QL02p093534 Quercus lobata HOM05D003426 ORTHO05D003816 2.7e-07 60.8 173 35.8
CDE05G1528 Ceratophyllum demersum HOM05D051348 ORTHO05D003816 4.6e-07 60.1 351 25.6
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 7.8e-07 59.3 291 25.1
PSO675G1450 Papaver somniferum HOM05D003426 ORTHO05D003816 1.0e-06 58.9 76 47.4
CDE02G2039 Ceratophyllum demersum HOM05D051348 ORTHO05D003816 1.3e-06 58.5 343 25.1
QL02p018764 Quercus lobata HOM05D003426 ORTHO05D003816 1.3e-06 58.5 276 24.3
PGSC0003DMG400040160 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.3e-06 58.5 236 31.8
Sopen10g015150 Solanum pennellii HOM05D003426 ORTHO05D003816 2.3e-06 57.8 85 40.0
AL4G14080 Arabidopsis lyrata HOM05D012895 ORTHO05D014428 3.0e-06 57.4 109 34.9
CSS0012807 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 3.9e-06 57.0 78 46.2
Aqoxy6G00819 Aquilegia oxysepala HOM05D000650 ORTHO05D000735 8.7e-06 55.8 194 24.2
Carub.0004s0319 Capsella rubella HOM05D012895 ORTHO05D014428 8.7e-06 55.8 443 22.1
QL02p093555 Quercus lobata HOM05D003426 ORTHO05D003816 8.7e-06 55.8 172 35.5


User provided reference genes

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