Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 5.7e-101 370.9 190 100.0
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 4.3e-80 301.6 191 85.3
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 4.0e-78 295.0 186 84.9
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 2.0e-77 292.7 192 83.3
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 1.3e-76 290.0 197 78.2
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 6.4e-76 287.7 193 80.8
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 1.0e-73 280.4 194 77.3
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 1.3e-73 280.0 182 79.7
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 5.6e-72 274.6 197 75.1
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 2.1e-71 272.7 182 78.6
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 3.6e-71 271.9 197 74.6
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 4.7e-71 271.6 197 75.1
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 6.8e-70 267.7 197 73.1
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 8.4e-68 260.8 196 73.0
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 2.7e-66 255.8 195 73.3
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 7.8e-66 254.2 194 72.2
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 5.1e-65 251.5 197 70.1
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 3.3e-64 248.8 200 68.0
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 7.3e-64 247.7 197 70.6
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 9.6e-64 247.3 190 68.9
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 8.1e-63 244.2 186 73.7
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 1.8e-62 243.0 197 69.0
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 6.8e-62 241.1 161 78.9
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 6.8e-62 241.1 197 68.5
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.2e-61 240.4 197 70.1
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 1.5e-61 240.0 197 68.5
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 1.5e-61 240.0 195 69.2
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 2.0e-61 239.6 195 71.3
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.0e-61 239.6 161 78.3
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 2.6e-61 239.2 161 78.3
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 2.6e-61 239.2 170 74.7
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 4.4e-61 238.4 185 70.3
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 9.9e-61 237.3 168 76.8
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 1.3e-60 236.9 194 68.6
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.3e-60 236.9 192 68.2
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.7e-60 236.5 192 67.7
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 2.9e-60 235.7 194 70.1
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 2.9e-60 235.7 191 70.2
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.9e-60 235.0 161 77.0
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 8.4e-60 234.2 197 69.0
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 8.4e-60 234.2 197 69.0
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 1.1e-59 233.8 188 69.1
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 1.1e-59 233.8 173 74.6
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 1.1e-59 233.8 160 77.5
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.1e-59 233.8 177 72.9
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 1.4e-59 233.4 194 68.0
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 3.2e-59 232.3 185 70.3
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 5.4e-59 231.5 174 73.6
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 5.4e-59 231.5 143 84.6
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 5.4e-59 231.5 195 66.7
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 7.1e-59 231.1 180 70.0
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 9.3e-59 230.7 163 76.7
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.6e-58 229.9 185 68.6
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 2.1e-58 229.6 193 67.4
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.1e-58 229.6 177 72.3
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 4.6e-58 228.4 196 65.3
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 6.0e-58 228.0 170 71.8
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 7.8e-58 227.6 185 67.0
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 7.8e-58 227.6 185 67.0
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 7.8e-58 227.6 198 67.2
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 1.7e-57 226.5 166 72.3
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 2.3e-57 226.1 191 66.5
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 3.0e-57 225.7 190 67.9
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 3.9e-57 225.3 177 71.2
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 5.1e-57 224.9 173 73.4
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 6.6e-57 224.6 195 65.1
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.1e-56 223.8 175 73.1
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.5e-56 223.4 175 72.6
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 1.5e-56 223.4 177 70.1
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.5e-56 223.4 175 70.9
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.5e-56 222.6 181 69.1
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.5e-56 222.6 190 65.3
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 4.3e-56 221.9 138 83.3
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 5.6e-56 221.5 172 70.3
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 5.6e-56 221.5 179 67.0
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 7.3e-56 221.1 175 72.0
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 9.6e-56 220.7 157 75.8
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 9.6e-56 220.7 173 71.1
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 9.6e-56 220.7 195 67.2
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.3e-55 220.3 174 71.3
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.3e-55 220.3 141 80.9
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 1.6e-55 219.9 148 79.1
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 2.8e-55 219.2 165 72.1
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 3.6e-55 218.8 142 81.7
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 3.6e-55 218.8 179 68.2
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 3.6e-55 218.8 197 65.5
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 3.6e-55 218.8 167 70.1
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 4.8e-55 218.4 146 79.5
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 8.1e-55 217.6 141 80.1
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 8.1e-55 217.6 150 75.3
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 8.1e-55 217.6 180 67.2
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 1.1e-54 217.2 156 73.7
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.4e-54 216.9 174 70.7
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 1.4e-54 216.9 172 72.1
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.4e-54 216.1 138 82.6
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 2.4e-54 216.1 173 68.8
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 3.1e-54 215.7 173 71.1
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 5.3e-54 214.9 174 69.5
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 9.0e-54 214.2 157 73.9
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.2e-53 213.8 188 63.3
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 2.0e-53 213.0 139 81.3
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 2.0e-53 213.0 173 70.5
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 2.6e-53 212.6 143 80.4
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 2.6e-53 212.6 143 80.4
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 2.6e-53 212.6 143 80.4
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 2.6e-53 212.6 143 80.4
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 3.4e-53 212.2 185 67.0
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 4.4e-53 211.8 150 78.0
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.4e-53 211.8 186 65.6
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 5.8e-53 211.5 189 61.9
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 7.6e-53 211.1 142 80.3
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 7.6e-53 211.1 171 69.6
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.7e-52 209.9 169 72.2
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 2.2e-52 209.5 182 66.5
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 2.9e-52 209.1 199 60.3
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 6.4e-52 208.0 146 77.4
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 2.4e-51 206.1 140 77.1
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 4.2e-51 205.3 146 75.3
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 5.4e-51 204.9 132 81.8
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 9.3e-51 204.1 113 92.0
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.1e-50 203.0 115 91.3
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 6.0e-50 201.4 115 88.7
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 6.0e-50 201.4 152 74.3
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 1.3e-49 200.3 197 60.9
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.1e-48 197.2 176 64.2
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 1.5e-48 196.8 181 64.6
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 2.5e-48 196.1 139 77.0
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 3.3e-48 195.7 177 62.1
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 5.6e-48 194.9 150 73.3
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 7.3e-48 194.5 115 86.1
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 7.3e-48 194.5 115 86.1
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 2.8e-47 192.6 128 78.9
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.6e-47 192.2 159 66.7
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.6e-47 192.2 159 66.7
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 4.8e-47 191.8 112 87.5
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 4.8e-47 191.8 172 63.4
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 7.6e-45 184.5 134 67.2
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 1.7e-44 183.3 112 83.9
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 2.2e-44 183.0 164 64.0
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.2e-42 177.2 140 67.1
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 4.6e-42 175.3 170 61.2
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.3e-41 173.7 141 66.0
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.8e-41 173.3 194 55.7
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 3.0e-41 172.6 191 55.5
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 3.0e-41 172.6 164 62.2
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 5.1e-41 171.8 149 59.1
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 1.1e-40 170.6 108 76.9
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 2.5e-40 169.5 187 56.7
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 1.1e-38 164.1 113 72.6
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 1.4e-38 163.7 111 72.1
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 5.3e-38 161.8 140 65.0
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 3.4e-37 159.1 338 36.7
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 7.1e-35 151.4 161 52.8
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 9.3e-35 151.0 156 59.6
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.8e-33 146.7 160 56.2
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 4.5e-29 132.1 109 62.4
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 5.1e-25 118.6 127 50.4
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.1e-24 117.5 129 56.6
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 7.4e-24 114.8 91 71.4
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 1.3e-23 114.0 79 74.7
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 4.8e-23 112.1 85 71.8
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 1.1e-22 110.9 86 74.4
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 4.1e-22 109.0 91 65.9
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 6.9e-22 108.2 86 73.3
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 6.9e-22 108.2 86 73.3
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 5.5e-19 98.6 111 54.1
Lalb_Chr12g0198741 Lupinus albus HOM05D004106 ORTHO05D004381 2.0e-16 90.1 82 61.0
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 5.3e-14 82.0 49 85.7
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 5.3e-14 82.0 63 68.3
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 6.5e-12 75.1 44 84.1
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 1.0e-09 67.8 38 86.8
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 3.0e-09 66.2 80 48.8
Psat5g263840 Pisum sativum HOM05D001198 ORTHO05D001599 8.2e-07 58.2 125 32.0


User provided reference genes

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