Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 4.9e-176 620.9 292 100.0
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 6.8e-170 600.5 295 95.9
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 6.6e-165 583.9 311 89.7
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 4.3e-164 581.3 311 89.7
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 2.6e-161 572.0 311 87.8
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 9.3e-159 563.5 295 90.5
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 3.9e-157 558.1 311 83.9
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 3.9e-157 558.1 313 84.0
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.1e-156 556.6 311 83.9
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 5.6e-156 554.3 307 84.4
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 5.6e-156 554.3 307 84.4
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 9.6e-156 553.5 311 84.2
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 2.1e-155 552.4 313 82.4
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 2.1e-155 552.4 309 83.5
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 3.6e-155 551.6 300 84.7
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 8.1e-155 550.4 311 83.9
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 1.1e-154 550.1 313 83.1
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 1.4e-154 549.7 312 84.3
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 1.4e-154 549.7 295 89.5
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 2.4e-154 548.9 311 82.0
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 3.1e-154 548.5 313 82.4
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 3.1e-154 548.5 313 83.1
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 4.0e-154 548.1 311 83.6
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.2e-153 546.6 311 82.6
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 1.2e-153 546.6 295 86.1
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 4.4e-153 544.7 305 83.6
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 7.6e-153 543.9 307 84.0
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 9.9e-153 543.5 313 82.4
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 2.2e-152 542.3 295 84.7
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 3.8e-152 541.6 295 85.4
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 8.4e-152 540.4 305 83.0
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 5.4e-151 537.7 308 82.5
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 9.3e-151 537.0 305 82.0
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 2.1e-150 535.8 305 82.3
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 2.7e-150 535.4 307 82.1
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 3.5e-150 535.0 305 82.3
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 4.6e-150 534.6 317 79.2
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 4.6e-150 534.6 308 81.5
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 6.0e-150 534.3 309 80.6
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 6.0e-150 534.3 311 80.4
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 1.0e-149 533.5 306 81.7
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 3.9e-149 531.6 304 81.6
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 6.6e-149 530.8 315 78.7
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 6.6e-149 530.8 311 79.7
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 8.7e-149 530.4 311 79.7
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 8.7e-149 530.4 305 81.0
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 1.1e-148 530.0 311 80.1
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 1.5e-148 529.6 304 80.9
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 2.5e-148 528.9 300 81.0
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 2.5e-148 528.9 295 82.7
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 3.3e-148 528.5 312 81.4
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 5.6e-148 527.7 303 79.9
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 7.4e-148 527.3 308 79.5
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 9.6e-148 526.9 308 79.2
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 1.3e-147 526.6 308 81.5
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 1.6e-147 526.2 308 79.2
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 1.6e-147 526.2 308 79.2
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 1.6e-147 526.2 308 79.2
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 2.8e-147 525.4 277 87.7
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 4.8e-147 524.6 316 77.5
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 8.1e-147 523.9 317 77.3
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 2.6e-145 518.8 287 84.7
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 4.5e-145 518.1 305 78.7
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 1.1e-143 513.5 317 77.6
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 1.4e-143 513.1 305 78.0
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 7.9e-142 507.3 307 79.8
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 3.7e-139 498.4 357 69.2
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 1.1e-138 496.9 415 61.9
Phvul.003G156000 Phaseolus vulgaris HOM05D005968 ORTHO05D007158 4.5e-137 491.5 275 86.2
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 2.2e-136 489.2 277 82.3
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 1.9e-135 486.1 305 75.7
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 4.3e-132 474.9 290 77.6
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 6.3e-131 471.1 311 71.1
Actinidia38673 Actinidia chinensis HOM05D005968 ORTHO05D007158 1.2e-129 466.8 271 81.9
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 6.5e-128 461.1 295 75.9
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 1.4e-127 459.9 263 82.1
AUR62029822 Chenopodium quinoa HOM05D005968 ORTHO05D007158 9.3e-127 457.2 252 83.3
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 2.5e-124 449.1 292 74.0
AUR62006466 Chenopodium quinoa HOM05D005968 ORTHO05D007158 3.3e-124 448.7 239 84.9
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 1.4e-114 416.8 338 62.1
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 6.1e-110 401.4 302 60.6
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 3.0e-101 372.5 285 66.0
Lsat_1_v5_gn_7_66900 Lactuca sativa HOM05D005968 ORTHO05D007158 1.0e-96 357.5 259 68.0
TPR.G24830 Trifolium pratense HOM05D005968 ORTHO05D007158 2.2e-96 356.3 168 97.6
Nitab4.5_0009876g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 3.2e-95 352.4 176 91.5
Medtr4g130830 Medicago truncatula HOM05D005968 ORTHO05D007158 6.1e-94 348.2 168 95.8
Lalb_Chr12g0198711 Lupinus albus HOM05D005968 ORTHO05D007158 2.3e-93 346.3 168 94.6
GSVIVG01023606001 Vitis vinifera HOM05D005968 ORTHO05D007158 6.3e-91 338.2 168 91.1
Oeu038140.1 Olea europaea HOM05D005968 ORTHO05D007158 3.1e-90 335.9 165 90.9
Eucgr.C02540 Eucalyptus grandis HOM05D005968 ORTHO05D007158 9.1e-90 334.3 168 89.3
Lsat_1_v5_gn_4_18721 Lactuca sativa HOM05D005968 ORTHO05D007158 2.0e-89 333.2 181 84.5
Cpa.g.sc46.157 Carica papaya HOM05D005968 ORTHO05D007158 3.5e-89 332.4 170 90.0
Cc06_g14950 Coffea canephora HOM05D005968 ORTHO05D007158 1.3e-88 330.5 168 89.9
RcHm_v2.0_Chr2g0085611 Rosa chinensis HOM05D005968 ORTHO05D007158 1.1e-87 327.4 168 86.3
Sc17g0006690 Simmondsia chinensis HOM05D005968 ORTHO05D007158 1.1e-87 327.4 160 91.9
CAN.G160.61 Capsicum annuum HOM05D005968 ORTHO05D007158 1.9e-87 326.6 168 88.7
MSTRG.26272 Avicennia marina HOM05D005968 ORTHO05D007158 2.7e-86 322.8 165 87.9
FAN28G0447 Fragaria x ananassa HOM05D005968 ORTHO05D007158 8.0e-86 321.2 168 85.1
Sopen07g001720 Solanum pennellii HOM05D005968 ORTHO05D007158 2.3e-85 319.7 168 86.3
vmacro06082 Vaccinium macrocarpon HOM05D005968 ORTHO05D007158 1.9e-79 300.1 185 77.3
AagrBONN_evm.TU.Sc2ySwM_362.192 Anthoceros agrestis HOM05D005968 ORTHO05D007158 1.0e-77 294.3 232 56.0
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 6.4e-75 285.0 183 74.9
Haze_19205 Corylus avellana HOM05D005968 ORTHO05D007158 1.8e-74 283.5 144 90.3
RhsimUnG0158300 Rhododendron simsii HOM05D005968 ORTHO05D001263 1.6e-57 227.3 122 83.6
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 6.0e-57 225.3 117 92.3
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 7.8e-57 224.9 117 92.3
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 1.5e-55 220.7 117 88.9
TAR636G1721 Trochodendron aralioides HOM05D005968 ORTHO05D007158 9.5e-55 218.0 110 89.1
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 6.4e-51 205.3 117 82.9
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 1.4e-50 204.1 125 76.8
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 7.1e-50 201.8 125 73.6
HPP92_004697 Vanilla planifolia HOM05D005968 ORTHO05D007158 9.2e-50 201.4 102 86.3
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 2.1e-49 200.3 113 82.3
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 2.7e-49 199.9 117 78.6
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 6.0e-49 198.7 117 77.8
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 7.8e-49 198.4 117 79.5
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 1.3e-48 197.6 117 79.5
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 3.0e-48 196.4 117 76.9
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 7.3e-47 191.8 117 75.2
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 1.2e-46 191.0 121 76.9
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 3.1e-45 186.4 117 73.5
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 4.6e-41 172.6 137 64.2
arahy.Tifrunner.gnm1.ann1.HW7BNQ Arachis hypogaea HOM05D005968 ORTHO05D007158 4.2e-34 149.4 69 100.0
arahy.Tifrunner.gnm1.ann1.4WLG0J Arachis hypogaea HOM05D005968 ORTHO05D007158 4.6e-33 146.0 227 39.2
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 4.6e-33 146.0 89 73.0
Nitab4.5_0006121g0010 Nicotiana tabacum HOM05D005968 ORTHO05D007158 3.8e-27 126.3 66 87.9
TAR636G0142 Trochodendron aralioides HOM05D002374 ORTHO05D003594 1.3e-24 117.9 77 71.4
Lsat_1_v5_gn_4_18741 Lactuca sativa HOM05D005968 ORTHO05D007158 2.5e-23 113.6 76 67.1
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.7e-19 100.9 71 69.0
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 4.2e-18 96.3 66 71.2
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 1.8e-16 90.9 46 89.1
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 3.3e-15 86.7 47 83.0
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 4.5e-12 76.3 40 85.0
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 3.3e-07 60.1 56 51.8
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 4.8e-06 56.2 29 82.8


User provided reference genes

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