Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 2602.0 1351 100.0
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 2593.9 1352 99.9
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1973.0 1504 71.9
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1972.2 1492 73.5
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1953.7 1581 69.3
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1714.1 1562 61.3
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1682.9 1397 66.8
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1675.2 1509 61.2
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1657.5 1509 60.8
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1630.9 1485 61.1
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1628.6 1564 59.8
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1617.1 1538 59.0
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1596.6 1560 59.7
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1338.2 1421 53.7
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1278.8 1505 49.2
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1266.5 1507 50.0
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1259.2 1520 48.6
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1244.6 1395 53.1
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1243.0 1464 49.7
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1241.1 1534 47.9
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1233.4 1456 51.1
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 0.0e+00 1230.7 2355 38.5
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1223.0 1516 48.7
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1209.5 1431 49.1
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1204.9 1533 47.0
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1204.1 1393 50.5
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1196.8 1423 51.4
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1195.6 1388 49.0
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1189.5 1386 50.6
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1182.2 1552 47.4
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1179.5 1383 49.5
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1165.6 1401 48.8
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1150.6 1402 49.4
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1149.4 1400 50.4
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1142.9 1387 47.9
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1135.2 1407 49.1
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1130.9 1372 50.0
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1129.8 1404 48.2
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1129.0 1456 47.5
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1128.6 1402 47.4
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1121.7 1407 47.1
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1117.4 1372 49.7
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1116.7 1453 48.7
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1110.5 1379 46.8
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1099.0 1447 45.1
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1098.2 1527 43.9
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1096.6 1362 48.7
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1088.9 1491 44.8
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1088.6 1392 46.6
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1086.2 1423 46.5
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1086.2 1400 48.9
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1081.6 1392 46.5
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1079.3 1802 40.6
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1075.5 1368 48.0
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 6.5e-311 1071.2 1532 42.4
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 7.0e-310 1067.8 1372 47.7
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 1.3e-308 1063.5 1368 47.6
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 1.7e-308 1063.1 1353 47.1
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 1.1e-307 1060.4 1383 47.1
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 1.9e-307 1059.7 1395 45.3
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 1.5e-304 1050.0 1388 45.9
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.5e-304 1050.0 1389 46.2
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 7.5e-304 1047.7 1380 46.0
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 2.2e-303 1046.2 1409 46.3
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 5.4e-302 1041.6 1400 46.4
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 1.6e-301 1040.0 1462 44.7
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 4.5e-301 1038.5 1451 44.9
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 3.8e-300 1035.4 1383 46.4
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 2.5e-299 1032.7 1364 45.5
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 3.7e-295 1018.8 1439 43.7
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 6.4e-295 1018.1 1400 45.7
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 2.2e-287 993.0 1392 44.7
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 1.9e-286 989.9 1515 42.7
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 9.2e-286 987.6 1367 45.1
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 9.5e-283 977.6 1499 42.8
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 4.7e-274 948.7 1420 43.6
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 5.8e-272 941.8 1471 43.3
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 5.8e-272 941.8 930 55.3
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 4.9e-271 938.7 1365 42.9
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 6.4e-271 938.3 1414 44.0
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 7.1e-270 934.9 1359 42.5
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 2.5e-267 926.4 1362 42.0
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 2.4e-257 893.3 1356 43.1
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.9e-255 886.3 1029 50.2
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.2e-253 880.9 1374 39.7
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.0e-252 876.3 737 62.7
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 3.3e-251 872.8 1205 45.6
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 8.7e-244 848.2 987 47.1
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 2.6e-232 810.1 1299 41.3
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 9.3e-230 801.6 1435 38.7
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 8.7e-228 795.0 1360 40.4
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.6e-211 740.3 1326 38.8
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.0e-204 718.4 1155 40.0
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 2.3e-204 717.2 788 51.9
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 4.8e-202 709.5 1381 34.5
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.9e-166 591.3 1181 37.2
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 2.8e-165 587.4 1482 32.7
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 4.7e-165 586.6 699 46.4
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 2.3e-164 584.3 547 56.1
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 3.1e-164 583.9 1345 34.7
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 1.2e-149 535.4 838 43.4
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.4e-147 527.3 889 39.3
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.3e-130 472.2 1339 29.2
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 1.6e-125 455.3 436 58.5
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 1.1e-113 416.0 1415 27.5
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.9e-110 405.2 549 44.8
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 7.2e-105 386.7 1538 26.0
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.2e-101 375.2 474 43.5
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 7.7e-99 366.7 443 48.8
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 2.2e-98 365.2 544 39.9
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.1e-94 352.8 349 58.7
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 7.0e-92 343.6 1451 25.0
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.7e-90 339.0 504 48.0
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 5.3e-84 317.4 323 57.3
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.1e-76 291.6 290 50.3
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 4.1e-68 264.6 331 46.8
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 4.3e-65 254.6 230 60.4
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.4e-60 238.8 244 55.7
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.4e-54 218.4 763 27.8
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.7e-50 206.1 162 66.7
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.2e-48 199.9 268 42.9
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 6.8e-47 194.1 441 37.2
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.3e-45 189.9 158 64.6
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 1.7e-42 179.5 127 71.7
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 9.5e-41 173.7 659 26.4
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.2e-37 162.5 233 37.8
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 3.2e-36 158.7 162 55.6
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.2e-29 136.0 207 40.6
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 1.1e-28 133.7 401 26.2
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 6.0e-27 127.9 710 24.8
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 8.7e-26 124.0 105 61.9
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 1.2e-22 113.6 102 58.8
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 1.7e-21 109.8 180 39.4
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 3.8e-21 108.6 352 27.0
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 1.6e-19 103.2 74 64.9
Psat4g190880 Pisum sativum HOM05D001399 ORTHO05D006361 5.8e-14 84.7 76 60.5
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.9e-12 79.7 79 58.2
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 2.5e-12 79.3 235 28.5
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.8e-10 73.2 75 54.7
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 5.1e-10 71.6 70 55.7
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.1e-09 70.5 90 46.7
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 2.5e-09 69.3 231 29.0
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 2.5e-09 69.3 138 33.3
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 1.8e-07 63.2 48 62.5


User provided reference genes

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