Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 6.0e-225 783.9 399 100.0
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.4e-205 719.5 399 91.5
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 4.8e-198 694.5 399 87.7
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 1.4e-197 693.0 390 89.5
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.3e-192 676.4 374 91.4
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.6e-190 669.5 390 85.4
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 3.6e-190 668.3 390 85.1
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 4.2e-186 654.8 386 84.2
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 2.1e-185 652.5 386 83.7
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 1.3e-184 649.8 386 82.1
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 3.0e-184 648.7 382 84.3
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.9e-183 646.0 386 82.4
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 5.6e-183 644.4 398 81.2
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 4.8e-182 641.3 386 81.1
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 3.1e-181 638.6 382 83.5
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 6.9e-181 637.5 386 80.6
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.5e-180 636.3 382 83.2
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 1.9e-162 576.2 385 73.5
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 3.6e-161 572.0 385 71.7
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 8.8e-160 567.4 385 70.1
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.5e-159 565.8 385 70.1
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 2.5e-159 565.8 385 70.9
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 7.4e-159 564.3 382 71.7
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 3.7e-158 562.0 383 71.5
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 3.7e-158 562.0 386 70.7
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.1e-157 560.5 380 71.6
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 1.4e-157 560.1 386 69.9
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 2.4e-157 559.3 385 69.9
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 4.1e-157 558.5 380 71.3
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 4.1e-157 558.5 386 69.4
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 4.1e-157 558.5 377 75.6
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 9.1e-157 557.4 383 70.8
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 9.1e-157 557.4 383 70.8
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.0e-156 556.2 394 68.5
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.5e-156 555.1 386 69.4
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 4.5e-156 555.1 380 71.3
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.3e-155 553.5 382 70.9
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 2.9e-155 552.4 382 70.2
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.8e-155 552.0 382 69.9
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 8.5e-155 550.8 403 66.3
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.1e-154 550.4 382 70.7
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.4e-154 550.1 375 71.7
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.9e-154 549.7 386 69.4
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 3.2e-154 548.9 385 69.9
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 5.5e-154 548.1 386 69.2
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.2e-153 547.0 384 71.9
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.6e-153 546.6 381 70.1
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 3.6e-153 545.4 390 68.5
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 7.9e-153 544.3 386 69.2
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 7.9e-153 544.3 390 68.7
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 1.0e-152 543.9 405 65.9
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 2.3e-152 542.7 386 68.7
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 2.3e-152 542.7 386 67.6
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 3.0e-152 542.3 386 68.9
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 5.1e-152 541.6 381 69.6
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 9.7e-151 537.3 382 68.6
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 2.2e-150 536.2 390 66.9
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 2.2e-150 536.2 382 68.1
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 6.3e-150 534.6 377 70.8
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 6.3e-150 534.6 378 69.0
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 6.3e-150 534.6 390 67.7
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 6.3e-150 534.6 391 67.5
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.1e-149 533.9 390 68.2
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 1.8e-149 533.1 388 66.8
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.2e-148 530.4 380 67.4
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 3.5e-148 528.9 385 66.8
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 5.9e-148 528.1 381 68.8
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 7.7e-148 527.7 380 66.6
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 7.7e-148 527.7 380 66.6
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.3e-147 526.9 381 69.8
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.3e-147 526.9 381 69.8
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.3e-147 526.9 381 69.8
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.3e-147 526.9 386 66.3
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.3e-147 526.9 382 67.0
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 1.7e-147 526.6 375 68.8
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 2.2e-147 526.2 386 66.1
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 3.8e-147 525.4 385 67.3
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 6.5e-147 524.6 379 68.9
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.1e-146 523.9 381 69.6
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.1e-146 523.9 388 67.8
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.5e-146 523.5 389 67.6
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 1.5e-146 523.5 374 69.0
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.5e-146 522.7 376 67.8
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 4.2e-146 521.9 377 70.3
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 4.2e-146 521.9 385 67.5
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 7.2e-146 521.2 390 67.7
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 9.4e-146 520.8 389 66.8
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.2e-145 520.4 390 67.7
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 1.2e-145 520.4 395 67.3
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.2e-145 520.4 375 68.5
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.2e-145 520.4 376 68.1
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 2.7e-145 519.2 389 66.8
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 3.6e-145 518.8 389 67.9
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 4.7e-145 518.5 389 66.6
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 4.7e-145 518.5 389 66.6
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 4.7e-145 518.5 389 66.6
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.8e-144 516.5 389 66.3
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 1.8e-144 516.5 385 66.5
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 1.8e-144 516.5 388 67.0
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.8e-144 516.5 386 68.1
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 2.3e-144 516.2 385 67.8
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 2.3e-144 516.2 380 68.7
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.3e-144 516.2 390 65.9
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 3.0e-144 515.8 389 66.3
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.5e-143 513.5 385 66.2
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 1.5e-143 513.5 380 65.5
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 5.7e-143 511.5 375 65.9
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 1.3e-142 510.4 380 68.4
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 5.3e-141 505.0 389 66.1
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.2e-139 499.6 365 67.4
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.9e-139 499.2 385 64.4
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.9e-139 499.2 376 64.9
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 5.0e-139 498.4 372 68.0
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 7.2e-138 494.6 379 66.2
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 2.6e-135 486.1 379 63.3
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 4.8e-134 481.9 381 63.0
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 5.9e-132 474.9 386 64.5
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 7.7e-132 474.6 362 64.1
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 6.3e-126 454.9 391 55.8
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.3e-123 447.2 315 69.5
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 5.6e-122 441.8 385 55.1
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 6.8e-120 434.9 333 64.3
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 7.5e-119 431.4 380 54.2
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 1.3e-118 430.6 387 52.7
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 3.3e-114 416.0 288 69.4
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 2.3e-99 366.7 394 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 1.9e-98 363.6 409 44.7
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 4.9e-94 349.0 378 46.3
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 3.9e-91 339.3 224 73.7
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.9e-85 320.5 429 40.1
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 2.7e-84 316.6 197 84.8
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 6.0e-84 315.5 433 38.3
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.1e-74 284.6 204 66.7
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 3.8e-70 269.6 171 77.2
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 2.0e-63 247.3 193 65.3
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 1.2e-55 221.5 156 71.2
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 2.9e-54 216.9 152 71.1
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 3.1e-32 143.7 103 68.0
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 1.1e-26 125.2 150 45.3
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 1.5e-26 124.8 71 87.3
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 9.1e-24 115.5 94 56.4
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.5e-13 80.9 368 24.5
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 7.2e-13 79.3 48 72.9
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 4.0e-11 73.6 46 82.6
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 6.8e-11 72.8 367 22.9
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.7e-07 60.8 48 54.2
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 6.6e-06 56.2 45 53.3


User provided reference genes

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