Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 4.1e-99 364.8 191 100.0
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 9.6e-72 273.9 192 74.0
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 1.1e-67 260.4 167 77.8
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 3.2e-67 258.8 189 70.4
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 6.2e-55 218.0 187 63.1
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 6.2e-55 218.0 145 73.8
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 4.8e-47 191.8 158 63.3
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 8.2e-47 191.0 151 62.3
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 8.2e-47 191.0 184 58.2
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.4e-46 189.5 152 61.8
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 2.6e-45 186.0 185 56.8
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 5.9e-45 184.9 155 62.6
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 3.8e-44 182.2 218 47.2
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 1.1e-43 180.6 150 63.3
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 6.1e-42 174.9 178 52.8
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 6.1e-42 174.9 192 47.9
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.0e-41 174.1 153 56.9
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 5.1e-41 171.8 190 51.1
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 8.7e-41 171.0 189 49.2
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 1.9e-40 169.9 149 57.7
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.9e-40 169.9 158 57.6
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.5e-40 169.5 157 58.6
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 3.7e-39 165.6 154 55.8
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 6.3e-39 164.9 162 54.9
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 1.4e-38 163.7 164 51.8
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 3.1e-38 162.5 162 53.7
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 5.3e-38 161.8 160 53.8
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 5.3e-38 161.8 190 45.3
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 6.9e-38 161.4 166 52.4
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 7.7e-37 157.9 149 55.7
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 1.3e-36 157.1 190 47.4
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 1.7e-36 156.8 156 50.6
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 6.5e-36 154.8 189 45.0
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 8.5e-36 154.5 156 53.2
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 8.5e-36 154.5 156 51.9
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 8.5e-36 154.5 199 45.2
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.1e-35 154.1 156 51.3
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.1e-35 154.1 156 51.3
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.1e-35 154.1 154 50.6
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 3.2e-35 152.5 155 51.6
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 4.2e-35 152.1 142 55.6
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 4.2e-35 152.1 170 49.4
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 5.5e-35 151.8 149 51.7
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 5.5e-35 151.8 156 48.1
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 9.4e-35 151.0 170 49.4
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.2e-34 150.6 171 49.1
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.6e-34 150.2 164 49.4
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 2.7e-34 149.4 154 51.3
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 6.1e-34 148.3 156 50.0
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 6.1e-34 148.3 145 50.3
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 6.7e-33 144.8 144 50.7
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 1.1e-32 144.1 142 52.1
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.0e-32 143.3 157 50.3
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.0e-32 143.3 157 50.3
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.6e-32 142.9 146 51.4
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 7.4e-32 141.4 148 50.7
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.3e-31 140.6 203 42.4
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 2.2e-31 139.8 134 51.5
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 4.8e-31 138.7 148 48.0
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 4.8e-31 138.7 152 49.3
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 1.4e-30 137.1 146 50.0
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.4e-30 137.1 150 48.0
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.8e-30 136.7 147 50.3
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 1.8e-30 136.7 148 48.6
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 3.1e-30 136.0 147 49.7
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 4.1e-30 135.6 167 46.1
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 1.5e-29 133.7 150 48.0
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.0e-29 133.3 144 48.6
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 1.0e-28 131.0 157 45.2
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.3e-28 130.6 152 46.7
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.3e-28 130.6 152 46.7
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.2e-28 129.8 149 46.3
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 2.2e-28 129.8 133 47.4
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 3.8e-28 129.0 154 46.8
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 5.0e-28 128.6 157 40.1
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 1.1e-27 127.5 148 47.3
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.1e-27 127.5 139 47.5
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 1.4e-27 127.1 145 49.7
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 1.4e-27 127.1 141 46.1
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 1.4e-27 127.1 138 50.0
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.2e-27 125.9 143 48.3
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 3.2e-27 125.9 150 42.7
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.2e-27 125.9 141 44.7
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 4.2e-27 125.6 163 42.9
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 4.2e-27 125.6 142 46.5
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 5.5e-27 125.2 136 49.3
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 7.2e-27 124.8 146 45.2
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 7.2e-27 124.8 154 44.8
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 9.4e-27 124.4 149 49.0
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.2e-26 124.0 141 47.5
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.7e-26 122.9 135 48.9
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.7e-26 122.9 141 48.2
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 2.7e-26 122.9 147 48.3
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 4.7e-26 122.1 157 38.9
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 7.9e-26 121.3 138 46.4
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 7.9e-26 121.3 148 44.6
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 7.9e-26 121.3 138 49.3
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 1.0e-25 120.9 144 46.5
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 1.8e-25 120.2 144 44.4
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.8e-25 120.2 148 47.3
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 2.3e-25 119.8 140 47.1
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 5.2e-25 118.6 133 47.4
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.2e-25 118.6 140 47.9
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 6.7e-25 118.2 138 46.4
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 8.8e-25 117.9 136 46.3
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 8.8e-25 117.9 136 46.3
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 8.8e-25 117.9 132 48.5
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 1.1e-24 117.5 135 48.1
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.1e-24 117.5 150 43.3
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 1.1e-24 117.5 145 46.2
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 1.5e-24 117.1 147 44.2
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 2.0e-24 116.7 143 44.1
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 5.7e-24 115.2 141 48.2
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 9.7e-24 114.4 139 46.8
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 9.7e-24 114.4 142 45.1
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 9.7e-24 114.4 141 46.8
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 9.7e-24 114.4 141 46.8
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 4.8e-23 112.1 149 42.3
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 6.3e-23 111.7 149 42.3
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 6.3e-23 111.7 141 47.5
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 8.2e-23 111.3 135 46.7
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.1e-22 110.9 147 40.8
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.8e-22 110.2 144 43.1
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 1.8e-22 110.2 137 46.0
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 1.8e-22 110.2 137 46.0
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 3.1e-22 109.4 146 44.5
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 4.1e-22 109.0 141 44.7
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 4.1e-22 109.0 143 39.9
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 5.3e-22 108.6 138 44.2
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 5.3e-22 108.6 146 46.6
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 7.0e-22 108.2 147 44.2
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 7.0e-22 108.2 147 44.2
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 7.0e-22 108.2 136 42.6
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 9.1e-22 107.8 147 43.5
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 9.1e-22 107.8 147 43.5
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 9.1e-22 107.8 101 54.5
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.2e-21 107.5 141 44.7
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.6e-21 107.1 138 42.8
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.0e-21 106.7 149 39.6
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.6e-21 106.3 138 42.0
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 3.5e-21 105.9 139 45.3
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 3.5e-21 105.9 139 45.3
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.5e-21 105.9 137 43.8
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 4.5e-21 105.5 134 47.0
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 4.5e-21 105.5 134 47.0
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 5.9e-21 105.1 142 45.1
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 5.9e-21 105.1 146 44.5
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 5.9e-21 105.1 138 42.8
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 7.7e-21 104.8 138 43.5
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.0e-20 104.4 138 43.5
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.0e-20 104.4 173 34.1
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 3.8e-20 102.4 139 44.6
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 3.8e-20 102.4 140 43.6
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 5.0e-20 102.1 138 44.9
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 5.0e-20 102.1 134 46.3
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 5.0e-20 102.1 134 46.3
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 5.0e-20 102.1 137 45.3
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 5.0e-20 102.1 134 46.3
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 6.5e-20 101.7 140 43.6
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 6.5e-20 101.7 148 43.2
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 6.5e-20 101.7 144 42.4
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 8.5e-20 101.3 149 39.6
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 8.5e-20 101.3 151 40.4
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.5e-19 100.5 133 41.4
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 2.5e-19 99.8 134 46.3
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 2.5e-19 99.8 137 44.5
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.2e-19 99.4 138 44.2
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 3.2e-19 99.4 137 43.8
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 5.5e-19 98.6 137 43.8
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.6e-18 97.1 108 43.5
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.6e-18 95.9 139 42.4
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 4.7e-18 95.5 120 40.0
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 8.0e-18 94.7 125 44.0
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.0e-17 94.4 149 40.3
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 1.5e-16 90.5 100 48.0
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 4.4e-16 89.0 142 39.4
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 4.2e-11 72.4 96 42.7
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 2.6e-08 63.2 75 46.7
RcHm_v2.0_Chr5g0000571 Rosa chinensis HOM05D003761 ORTHO05D004412 1.7e-07 60.5 75 50.7


User provided reference genes

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