Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 1.8e-207 725.7 381 100.0
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 1.9e-159 566.2 397 78.6
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 4.6e-150 535.0 388 75.5
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 4.3e-148 528.5 318 86.2
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 2.1e-147 526.2 401 73.8
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 7.1e-143 511.1 395 72.4
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 3.9e-141 505.4 396 70.2
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 3.3e-140 502.3 321 80.7
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 3.3e-140 502.3 396 72.7
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 2.7e-134 482.6 329 79.3
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 6.9e-130 468.0 378 65.6
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 1.2e-126 457.2 325 70.8
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 3.5e-126 455.7 326 72.4
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 6.0e-126 454.9 413 61.3
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 7.9e-126 454.5 330 70.3
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 1.3e-125 453.8 330 70.9
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 1.8e-125 453.4 324 71.0
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 2.3e-125 453.0 330 70.9
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 1.1e-124 450.7 329 70.5
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 2.5e-124 449.5 389 62.0
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 5.7e-124 448.4 324 71.9
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 5.7e-124 448.4 330 70.0
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 4.8e-123 445.3 328 70.4
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 1.2e-121 440.7 356 65.4
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 5.9e-121 438.3 320 70.9
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 1.3e-120 437.2 324 69.1
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 1.1e-119 434.1 399 60.4
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 1.4e-119 433.7 320 69.7
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 1.4e-119 433.7 333 67.6
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 1.9e-119 433.3 351 65.5
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 4.2e-119 432.2 409 58.9
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 4.2e-119 432.2 330 69.4
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 5.5e-119 431.8 408 59.8
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 7.2e-119 431.4 378 61.1
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 6.1e-118 428.3 325 68.6
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 1.0e-117 427.6 320 70.0
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 8.8e-117 424.5 329 66.0
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 3.3e-116 422.5 321 68.5
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 2.8e-115 419.5 322 66.8
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 8.2e-115 417.9 333 65.8
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 5.3e-114 415.2 321 67.3
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 5.3e-114 415.2 313 68.4
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 1.2e-113 414.1 330 64.2
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 1.2e-113 414.1 319 67.4
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 2.0e-113 413.3 379 59.9
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 3.8e-112 409.1 389 59.4
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 5.0e-112 408.7 339 63.1
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 6.5e-112 408.3 320 65.0
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 2.5e-111 406.4 323 65.3
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 4.2e-111 405.6 329 63.5
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 5.5e-111 405.2 325 65.8
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 3.6e-110 402.5 325 65.5
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 6.1e-110 401.7 324 64.5
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 8.8e-109 397.9 333 64.3
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 2.0e-108 396.7 336 63.7
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 3.3e-108 396.0 384 56.5
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 1.7e-107 393.7 324 63.6
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 1.7e-107 393.7 384 56.2
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 2.2e-107 393.3 322 64.0
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 2.8e-107 392.9 384 56.2
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 1.4e-106 390.6 355 59.7
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 1.8e-106 390.2 325 60.9
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 5.0e-104 382.1 346 61.3
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 6.5e-104 381.7 329 60.5
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 4.2e-103 379.0 326 60.1
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 9.4e-103 377.9 343 60.9
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 1.2e-102 377.5 367 57.2
Lalb_Chr01g0011631 Lupinus albus HOM05D007236 ORTHO05D009150 5.7e-100 368.6 215 86.5
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 1.1e-98 364.4 306 64.7
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 1.3e-96 357.5 305 60.7
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 6.5e-96 355.1 275 66.9
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 1.5e-95 354.0 371 52.3
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 3.8e-88 329.3 322 55.3
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 1.1e-87 327.8 321 56.7
Gohir.D06G121200 Gossypium hirsutum HOM05D007236 ORTHO05D009150 4.7e-86 322.4 398 50.0
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 4.7e-86 322.4 437 46.0
Sc12g0011350 Simmondsia chinensis HOM05D007236 ORTHO05D009150 3.0e-85 319.7 244 67.6
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 2.2e-83 313.5 247 68.4
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 5.9e-81 305.4 303 54.5
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 2.8e-78 296.6 331 52.3
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 1.4e-77 294.3 325 52.3
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 2.6e-76 290.0 325 50.8
Haze_16198 Corylus avellana HOM05D007236 ORTHO05D009150 7.5e-76 288.5 272 57.4
SMO117G0135 Selaginella moellendorffii HOM05D007236 ORTHO05D009150 4.7e-70 269.2 327 47.1
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 1.8e-69 267.3 297 51.9
CAN.G790.6 Capsicum annuum HOM05D007236 ORTHO05D009150 3.1e-69 266.5 200 67.0
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 3.4e-68 263.1 186 73.1
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 2.0e-65 253.8 186 70.4
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 1.7e-64 250.8 316 46.2
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 1.3e-59 234.6 339 41.3
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 6.4e-59 232.3 318 41.5
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 1.1e-53 214.9 187 62.0
Atru.chr1.2627 Acer truncatum HOM05D007236 ORTHO05D009150 1.3e-48 198.0 137 72.3
Cpa.g.sc176.15 Carica papaya HOM05D007236 ORTHO05D009150 2.3e-48 197.2 218 51.4
Ciclev10013945m.g Citrus clementina HOM05D007236 ORTHO05D009150 1.2e-36 158.3 118 68.6
Atru.chr1.2630 Acer truncatum HOM05D007236 ORTHO05D009150 1.5e-36 157.9 124 63.7
CANSAT01G0299 Cannabis sativa HOM05D007236 ORTHO05D009150 1.7e-35 154.5 109 70.6
Nitab4.5_0000499g0120 Nicotiana tabacum HOM05D007236 ORTHO05D009150 3.5e-33 146.7 112 63.4
PRCOL_00005889 Prasinoderma coloniale HOM05D007236 ORTHO05D009150 4.0e-29 133.3 338 32.8
Lj9A543T70 Lonicera japonica HOM05D007236 ORTHO05D009150 9.9e-28 128.6 99 65.7
CSS0013667 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 1.7e-27 127.9 87 75.9
Cre12.g554103 Chlamydomonas reinhardtii HOM05D007236 ORTHO05D009150 7.9e-25 119.0 343 28.9
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 1.6e-22 111.3 115 53.9
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 1.3e-19 101.7 87 58.6
Haze_16199 Corylus avellana HOM05D007236 ORTHO05D009150 4.8e-14 83.2 60 71.7
MCO09G516 Micromonas commoda HOM05D007236 ORTHO05D009150 1.4e-13 81.6 264 27.3
Nitab4.5_0000499g0130 Nicotiana tabacum HOM05D007236 ORTHO05D009150 4.6e-09 66.6 55 60.0
Aa31sc24G50 Aethionema arabicum HOM05D002308 ORTHO05D002535 1.9e-07 61.2 98 41.8
THA.LOC104823250 Tarenaya hassleriana HOM05D001509 ORTHO05D001361 2.5e-07 60.8 264 23.1
BcaB06g28988 Brassica carinata HOM05D001509 ORTHO05D001361 2.2e-06 57.8 210 26.7
Glyma.13G133400 Glycine max HOM05D001509 ORTHO05D001361 4.8e-06 56.6 189 24.9


User provided reference genes

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