Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 2.4e-192 675.2 317 100.0
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 3.1e-152 542.0 318 81.8
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 4.5e-143 511.5 322 78.0
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 1.7e-129 466.5 316 71.2
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 2.2e-129 466.1 317 70.7
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 2.4e-128 462.6 316 68.0
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 1.7e-126 456.4 293 71.3
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 2.3e-126 456.1 316 69.0
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 3.0e-126 455.7 315 70.5
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 9.5e-125 450.7 320 69.4
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 8.6e-118 427.6 293 68.9
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 4.4e-114 415.2 290 65.9
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 2.2e-113 412.9 279 67.7
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 6.4e-113 411.4 284 66.5
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 3.2e-112 409.1 326 61.0
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 2.1e-111 406.4 299 64.2
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 2.7e-111 406.0 253 71.5
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 2.3e-110 402.9 257 72.4
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 2.1e-108 396.4 290 64.5
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 1.8e-107 393.3 299 61.9
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 2.3e-107 392.9 285 66.7
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.2e-106 390.6 309 61.8
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 1.2e-106 390.6 301 61.8
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 4.4e-106 388.7 257 68.5
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 9.9e-106 387.5 265 66.8
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 1.7e-105 386.7 250 71.2
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 2.2e-105 386.3 291 63.2
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 6.4e-105 384.8 325 59.1
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 3.2e-104 382.5 257 68.5
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 5.4e-104 381.7 304 59.9
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 3.5e-103 379.0 270 67.8
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 3.0e-102 375.9 307 60.3
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 8.6e-102 374.4 257 64.6
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 8.6e-102 374.4 257 65.0
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 1.5e-101 373.6 288 60.8
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 3.3e-101 372.5 296 62.2
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 5.6e-101 371.7 255 64.3
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 7.3e-101 371.3 254 67.3
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 1.6e-100 370.2 293 60.4
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 2.1e-100 369.8 253 64.8
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 2.8e-100 369.4 257 64.2
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 3.6e-100 369.0 309 55.7
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 6.2e-100 368.2 272 62.9
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 1.8e-99 366.7 289 60.6
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 2.4e-99 366.3 272 60.3
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 2.4e-99 366.3 269 64.7
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 3.1e-99 365.9 306 58.5
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 3.1e-99 365.9 294 59.5
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 3.1e-99 365.9 278 59.4
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 4.0e-99 365.5 249 64.3
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 8.9e-99 364.4 300 58.0
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 7.6e-98 361.3 299 56.5
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 7.6e-98 361.3 299 56.5
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 3.8e-97 359.0 275 59.6
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 4.9e-97 358.6 249 63.5
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 2.4e-96 356.3 257 64.6
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 3.2e-96 355.9 249 63.1
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 9.3e-96 354.4 233 70.0
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 9.3e-96 354.4 249 63.1
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 1.2e-95 354.0 300 56.3
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 2.7e-95 352.8 302 56.0
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 2.7e-95 352.8 274 56.2
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 3.5e-95 352.4 207 76.8
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 4.6e-95 352.1 249 62.2
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 3.9e-94 349.0 258 62.4
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 4.3e-93 345.5 303 55.8
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 3.6e-92 342.4 253 62.1
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 4.0e-91 339.0 249 63.9
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 6.9e-91 338.2 275 56.7
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 5.8e-90 335.1 302 54.0
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 3.8e-89 332.4 250 62.0
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.9e-88 330.1 315 53.3
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 1.2e-87 327.4 294 54.8
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 1.2e-87 327.4 293 55.3
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 3.9e-86 322.4 249 63.5
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 1.1e-85 320.9 206 74.8
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 6.4e-81 305.1 294 53.1
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 6.4e-81 305.1 259 53.3
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 6.2e-76 288.5 284 53.9
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 9.0e-75 284.6 277 51.6
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 6.5e-73 278.5 283 49.8
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 5.5e-72 275.4 290 49.3
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 3.1e-67 259.6 251 49.4
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 4.5e-58 229.2 253 47.0
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 5.0e-57 225.7 249 45.8
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 1.4e-54 217.6 135 68.9
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 9.7e-53 211.5 256 40.2
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 2.2e-52 210.3 276 39.1
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 6.9e-51 205.3 182 52.7
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 1.4e-46 191.0 109 75.2
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 1.7e-44 184.1 116 73.3
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 4.8e-44 182.6 249 36.9
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 4.4e-37 159.5 85 82.4
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 1.7e-36 157.5 86 76.7
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 1.2e-34 151.4 106 58.5
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 1.8e-30 137.5 143 50.3
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 2.8e-28 130.2 297 29.6
arahy.Tifrunner.gnm1.ann1.QYJ7WZ Arachis hypogaea HOM05D007092 ORTHO05D008947 1.0e-22 111.7 74 74.3
arahy.Tifrunner.gnm1.ann1.TPQB3Q Arachis hypogaea HOM05D007092 ORTHO05D008947 1.0e-22 111.7 74 74.3
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 7.5e-21 105.5 83 51.8
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 1.7e-20 104.4 53 79.2
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 1.7e-20 104.4 53 79.2
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 3.7e-20 103.2 67 64.2
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 6.1e-15 85.9 55 65.5
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 1.0e-14 85.1 58 65.5
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 1.0e-14 85.1 58 65.5
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 4.6e-10 69.7 59 50.8
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 5.9e-10 69.3 55 58.2
arahy.Tifrunner.gnm1.ann1.AT2CXE Arachis hypogaea HOM05D007092 ORTHO05D008947 1.5e-08 64.7 41 63.4
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 7.3e-08 62.4 95 38.9
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 9.5e-08 62.0 65 38.5
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 1.8e-06 57.8 31 77.4
SEGI_38624 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 2.3e-06 57.4 46 47.8
Hund18614 Selenicereus undatus HOM05D007092 ORTHO05D008947 8.9e-06 55.5 47 55.3


User provided reference genes

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