Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 4.7e-263 910.6 449 100.0
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 3.5e-250 867.8 449 95.8
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 2.0e-237 825.5 452 90.9
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 2.9e-236 821.6 450 91.1
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 7.1e-235 817.0 454 89.6
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 1.3e-228 796.2 458 86.2
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 3.8e-220 768.1 457 82.7
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 3.2e-219 765.0 465 82.2
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 3.2e-219 765.0 458 81.9
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 1.6e-218 762.7 435 85.5
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 3.0e-217 758.4 435 85.1
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 1.8e-214 749.2 422 85.5
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 3.8e-212 741.5 425 82.1
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 8.5e-212 740.3 425 83.3
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 1.9e-211 739.2 425 81.9
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 7.4e-208 727.2 422 82.0
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 2.2e-207 725.7 430 81.2
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 2.8e-207 725.3 426 81.0
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.1e-206 723.4 425 80.9
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 1.8e-206 722.6 426 81.2
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 2.4e-206 722.2 426 81.0
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 4.1e-206 721.5 426 80.5
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 4.1e-206 721.5 426 80.8
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 5.3e-206 721.1 426 81.0
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 1.2e-205 719.9 426 80.5
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 2.0e-205 719.2 426 80.5
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 1.0e-204 716.8 427 80.8
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 1.7e-204 716.1 425 80.0
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.8e-204 714.9 430 80.0
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 2.5e-203 712.2 425 78.6
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 3.2e-203 711.8 426 80.3
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 7.2e-203 710.7 438 78.3
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 6.1e-202 707.6 426 79.3
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.8e-201 706.1 468 75.2
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 3.0e-201 705.3 425 79.8
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 4.0e-201 704.9 426 80.0
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 5.2e-201 704.5 461 74.4
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 5.2e-201 704.5 426 79.1
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 6.7e-201 704.1 425 78.8
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 2.0e-200 702.6 422 78.9
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 7.5e-200 700.7 425 77.4
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.3e-199 699.9 427 77.0
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 1.3e-199 699.9 426 79.8
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 2.8e-199 698.7 425 78.4
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 8.2e-199 697.2 453 74.6
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.8e-198 696.0 431 76.8
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 2.4e-198 695.7 427 78.0
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 5.3e-198 694.5 426 78.6
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 9.1e-198 693.7 431 76.1
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 1.2e-197 693.3 425 76.9
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 1.2e-197 693.3 429 77.4
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 2.7e-197 692.2 433 75.5
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 2.7e-197 692.2 429 79.0
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 3.5e-197 691.8 425 77.2
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 3.5e-197 691.8 440 75.0
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.5e-197 691.8 430 77.4
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 4.5e-197 691.4 468 72.0
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 5.9e-197 691.0 434 77.2
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 7.7e-197 690.6 427 76.1
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 1.7e-196 689.5 426 77.5
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 2.9e-196 688.7 425 76.0
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 3.8e-196 688.3 425 75.8
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 5.0e-196 688.0 425 75.8
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 6.5e-196 687.6 427 76.1
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 6.5e-196 687.6 425 76.7
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 2.5e-195 685.6 431 75.4
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 2.5e-195 685.6 436 75.0
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 4.2e-195 684.9 424 75.9
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 5.5e-195 684.5 436 75.0
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 5.5e-195 684.5 436 75.0
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 7.2e-195 684.1 427 75.6
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 9.4e-195 683.7 436 74.8
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.1e-194 682.6 426 77.7
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 2.7e-194 682.2 436 74.8
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 2.7e-194 682.2 436 74.8
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 1.4e-193 679.9 425 77.4
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 2.3e-193 679.1 429 76.0
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 2.3e-193 679.1 433 74.6
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 8.8e-193 677.2 425 77.4
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 4.4e-192 674.9 425 77.4
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 9.8e-192 673.7 427 76.3
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 3.7e-191 671.8 445 74.2
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 3.5e-189 665.2 428 75.9
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 5.9e-189 664.5 405 78.0
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 1.7e-188 662.9 408 77.5
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 1.9e-187 659.4 403 78.2
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 3.3e-187 658.7 406 77.3
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 9.5e-187 657.1 414 76.6
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.4e-184 648.3 434 71.9
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 4.5e-181 638.3 428 72.2
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 2.3e-180 636.0 378 81.0
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.3e-180 636.0 482 66.2
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 1.3e-175 620.2 426 72.8
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 7.0e-174 614.4 424 70.3
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.7e-173 612.5 411 72.7
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 5.0e-172 608.2 378 77.5
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 1.6e-170 603.2 449 66.6
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 2.8e-170 602.4 442 70.8
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 7.0e-166 587.8 425 70.1
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 1.2e-165 587.0 394 72.6
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 3.5e-165 585.5 423 68.1
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 3.3e-163 578.9 428 65.0
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 2.1e-162 576.2 341 80.4
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 1.3e-159 567.0 439 61.7
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 6.4e-159 564.7 409 67.7
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.9e-158 563.1 390 69.5
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.3e-156 556.2 378 73.0
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 8.9e-153 544.3 381 70.3
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 2.6e-152 542.7 420 65.2
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 2.5e-147 526.2 432 60.4
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 6.0e-141 505.0 465 54.4
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 7.8e-141 504.6 328 75.6
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 1.0e-132 477.6 351 72.4
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.0e-116 424.5 248 80.6
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 1.9e-115 420.2 390 53.6
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 1.5e-112 410.6 297 68.0
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 1.5e-112 410.6 297 68.0
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 7.9e-101 371.7 295 63.4
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 2.6e-99 366.7 265 68.7
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 1.2e-96 357.8 285 63.2
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 2.6e-96 356.7 272 66.9
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 2.5e-94 350.1 296 62.2
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 7.4e-91 338.6 389 46.0
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.3e-79 301.2 206 70.9
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 1.2e-77 294.7 336 45.5
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.8e-76 290.8 175 78.3
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 9.5e-70 268.5 252 56.7
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 2.6e-67 260.4 580 32.6
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 4.9e-50 203.0 460 33.0
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 2.0e-43 181.0 110 80.0
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 7.1e-41 172.6 114 71.9
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 4.9e-34 149.8 85 81.2
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 1.5e-30 138.3 82 74.4
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 1.5e-27 128.3 77 77.9
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 5.3e-20 103.2 74 67.6
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 9.9e-19 99.0 71 67.6
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 9.9e-19 99.0 71 67.6
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 9.9e-19 99.0 71 67.6
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 1.3e-18 98.6 97 55.7
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 1.7e-18 98.2 70 68.6
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 1.7e-18 98.2 71 67.6
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 1.7e-18 98.2 94 55.3
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 2.2e-18 97.8 98 53.1
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 8.4e-18 95.9 71 64.8
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 1.1e-17 95.5 58 74.1
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 1.4e-17 95.1 70 65.7
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 1.4e-17 95.1 71 64.8
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 2.7e-16 90.9 53 75.5
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 1.9e-14 84.7 87 56.3
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.2e-13 79.7 69 59.4
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 5.5e-09 66.6 52 61.5
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 7.9e-08 62.8 41 73.2
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 5.1e-07 60.1 33 81.8


User provided reference genes

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