Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 7.2e-110 400.6 203 100.0
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 1.8e-84 316.2 220 77.3
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 9.2e-81 303.9 218 77.5
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 1.2e-77 293.5 218 72.9
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 8.1e-77 290.8 224 74.1
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 1.1e-76 290.4 216 74.1
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 8.9e-76 287.3 218 72.5
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 1.5e-75 286.6 212 71.2
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 2.0e-75 286.2 218 71.1
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 2.2e-74 282.7 216 70.4
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 2.2e-74 282.7 218 72.5
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 4.9e-74 281.6 212 69.8
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 6.4e-74 281.2 212 69.8
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 2.2e-66 256.1 213 66.2
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.1e-62 243.8 215 62.8
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 1.7e-58 229.9 220 59.1
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 1.1e-57 227.3 214 59.3
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 4.2e-57 225.3 220 59.1
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 9.3e-57 224.2 214 58.9
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.6e-56 223.4 213 59.6
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 1.7e-55 219.9 182 64.8
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 3.0e-55 219.2 211 56.9
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 5.1e-55 218.4 215 56.7
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.1e-54 217.2 220 56.4
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 7.3e-54 214.5 217 54.8
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 6.2e-53 211.5 210 59.0
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 6.2e-53 211.5 213 57.3
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 8.1e-53 211.1 186 64.0
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 1.1e-52 210.7 205 56.6
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.1e-52 210.7 218 54.6
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.4e-52 210.3 213 57.3
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 2.4e-52 209.5 220 57.7
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 3.1e-52 209.1 209 56.5
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 6.9e-52 208.0 220 57.3
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.5e-51 206.8 208 54.8
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 2.0e-51 206.5 215 55.3
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 2.6e-51 206.1 216 54.6
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 4.4e-51 205.3 212 53.8
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 1.3e-50 203.8 214 54.2
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.2e-50 203.0 209 53.6
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 2.2e-50 203.0 209 53.6
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 6.4e-50 201.4 218 55.0
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 4.2e-49 198.7 217 51.2
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 7.1e-49 198.0 213 53.1
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 9.3e-49 197.6 208 52.4
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 4.6e-48 195.3 217 53.0
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 7.9e-48 194.5 212 54.2
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 3.0e-47 192.6 220 51.8
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 3.0e-47 192.6 202 53.5
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 3.0e-47 192.6 226 50.0
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 5.1e-47 191.8 210 51.9
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.5e-46 190.3 168 57.1
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 3.3e-46 189.1 177 57.6
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.3e-46 189.1 177 57.6
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 3.3e-46 189.1 216 50.9
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 5.6e-46 188.3 216 50.5
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 1.3e-45 187.2 214 51.4
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 2.1e-45 186.4 209 51.7
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 2.8e-45 186.0 211 49.8
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 6.2e-45 184.9 217 50.2
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 1.8e-44 183.3 221 48.9
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 3.1e-44 182.6 217 49.8
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 5.3e-44 181.8 216 51.9
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 6.9e-44 181.4 210 48.6
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 9.0e-44 181.0 215 50.7
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 2.0e-43 179.9 207 48.8
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 2.0e-43 179.9 207 49.8
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 5.8e-43 178.3 210 48.6
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 7.6e-43 177.9 180 56.7
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 9.9e-43 177.6 207 49.3
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 2.2e-42 176.4 176 55.1
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 2.2e-42 176.4 207 47.8
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.8e-42 175.6 207 47.8
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 8.4e-42 174.5 171 55.6
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 8.4e-42 174.5 226 47.8
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 7.1e-41 171.4 162 54.3
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 2.7e-40 169.5 304 38.5
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 4.6e-40 168.7 213 46.0
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 5.1e-39 165.2 209 47.8
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 8.7e-39 164.5 166 55.4
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 8.7e-39 164.5 211 45.0
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 4.3e-38 162.2 178 50.0
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 5.6e-38 161.8 211 45.0
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 9.6e-38 161.0 224 45.5
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 4.8e-37 158.7 204 47.5
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 4.8e-37 158.7 209 45.9
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 8.1e-37 157.9 168 53.0
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.8e-36 156.8 204 48.5
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 2.4e-36 156.4 151 58.3
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 6.9e-36 154.8 195 47.7
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 1.2e-35 154.1 182 47.8
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 7.6e-35 151.4 131 60.3
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 3.8e-34 149.1 131 59.5
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 3.2e-33 146.0 166 49.4
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 2.1e-32 143.3 182 46.2
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 2.7e-32 142.9 160 48.8
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.5e-32 142.5 169 47.9
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 4.6e-32 142.1 144 58.3
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.0e-31 141.0 169 45.6
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.0e-31 141.0 200 41.0
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.8e-31 140.2 142 50.7
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.3e-31 139.8 137 51.8
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 3.9e-31 139.0 200 40.0
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 6.7e-31 138.3 199 43.7
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.1e-30 137.5 143 51.0
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 5.7e-30 135.2 142 52.8
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 7.4e-30 134.8 198 39.4
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.7e-29 132.5 206 39.8
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 1.8e-28 130.2 205 39.5
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 3.1e-28 129.4 179 43.6
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 5.3e-28 128.6 161 41.6
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 6.9e-28 128.3 212 37.7
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 9.0e-28 127.9 220 35.5
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 1.5e-27 127.1 141 50.4
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 2.6e-27 126.3 216 35.6
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 4.5e-27 125.6 191 41.9
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 1.3e-26 124.0 169 42.0
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 1.3e-26 124.0 120 53.3
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 1.7e-26 123.6 120 55.0
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 5.0e-26 122.1 181 42.5
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 5.0e-26 122.1 171 39.8
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 5.0e-26 122.1 142 43.7
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 6.5e-26 121.7 213 35.7
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 6.5e-26 121.7 208 36.5
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 6.5e-26 121.7 167 45.5
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 1.1e-25 120.9 110 52.7
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 1.4e-25 120.6 175 38.3
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 1.4e-25 120.6 111 60.4
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.9e-25 120.2 151 39.7
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.2e-25 119.4 172 39.5
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 3.2e-25 119.4 150 45.3
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 7.2e-25 118.2 122 53.3
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 9.3e-25 117.9 113 56.6
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 2.1e-24 116.7 137 43.8
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 1.0e-23 114.4 178 37.1
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.3e-23 114.0 126 47.6
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 6.7e-23 111.7 75 68.0
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.1e-22 110.9 169 39.6
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 5.7e-22 108.6 129 50.4
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 7.4e-22 108.2 75 66.7
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 9.7e-22 107.8 117 50.4
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 4.8e-21 105.5 153 42.5
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.5e-19 100.5 133 42.9
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 3.4e-19 99.4 118 44.1
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 2.2e-18 96.7 203 32.0
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 6.5e-18 95.1 70 67.1
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.2e-17 92.8 73 65.8
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 5.5e-17 92.0 152 37.5
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.8e-15 87.0 215 35.8
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 7.4e-14 81.6 87 52.9
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 9.7e-14 81.3 87 52.9
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 2.2e-13 80.1 63 60.3
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 4.8e-13 79.0 182 34.6
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 4.8e-13 79.0 95 48.4
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.1e-12 77.8 113 39.8
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 6.9e-12 75.1 119 36.1
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 2.0e-11 73.6 115 36.5
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 4.5e-11 72.4 81 46.9
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 2.9e-10 69.7 85 47.1
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 6.5e-10 68.6 112 38.4
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 1.6e-08 63.9 102 35.3
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 2.7e-08 63.2 218 32.6
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 4.7e-08 62.4 89 39.3
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 5.1e-07 58.9 38 71.1
MCO07G134 Micromonas commoda HOM05D004603 ORTHO05D005244 3.3e-06 56.2 71 40.8
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 5.7e-06 55.5 92 35.9


User provided reference genes

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