Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 3.5e-253 877.9 457 100.0
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 7.2e-174 614.4 459 73.4
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 5.9e-168 594.7 466 70.4
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 6.5e-167 591.3 450 71.3
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 2.9e-159 565.8 445 70.6
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 1.4e-153 547.0 461 67.5
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 2.7e-144 516.2 477 60.4
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 1.5e-142 510.4 462 63.2
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 1.9e-142 510.0 483 60.2
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 2.6e-139 499.6 454 62.3
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 3.0e-132 476.1 437 62.2
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 1.7e-127 460.3 484 56.8
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 6.6e-127 458.4 483 55.9
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 5.6e-126 455.3 481 55.7
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 1.8e-124 450.3 481 55.7
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 2.6e-123 446.4 464 56.0
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 4.9e-122 442.2 480 53.1
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 4.9e-122 442.2 434 56.7
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 1.4e-121 440.7 419 57.8
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 5.4e-121 438.7 513 50.9
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 1.2e-120 437.6 479 53.4
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 4.6e-120 435.6 403 59.8
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 6.6e-119 431.8 463 54.2
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 2.5e-118 429.9 450 54.7
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 4.3e-118 429.1 450 54.2
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 4.3e-118 429.1 463 54.0
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.8e-117 426.4 463 54.4
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.4e-116 424.1 429 55.0
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 3.1e-116 422.9 463 53.8
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 3.1e-116 422.9 462 52.6
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 8.9e-116 421.4 477 50.3
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 3.4e-115 419.5 463 52.9
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 7.5e-115 418.3 474 51.7
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 2.4e-113 413.3 332 70.2
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 3.2e-113 412.9 337 68.2
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 7.0e-113 411.8 544 48.5
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 2.0e-112 410.2 470 51.3
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 7.8e-112 408.3 416 55.0
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 3.0e-111 406.4 458 52.6
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 3.0e-111 406.4 464 52.6
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 3.0e-111 406.4 429 53.4
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 5.0e-111 405.6 458 52.0
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 8.6e-111 404.8 458 52.2
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 1.1e-110 404.4 462 51.7
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 1.5e-110 404.1 480 51.2
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 7.3e-110 401.7 459 52.1
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.1e-109 400.2 458 52.2
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 8.1e-109 398.3 470 48.3
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 2.3e-108 396.7 445 51.7
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 3.1e-108 396.4 409 54.5
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 6.8e-108 395.2 417 56.1
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 6.8e-108 395.2 403 55.6
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 8.9e-108 394.8 458 50.2
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 1.5e-107 394.0 491 48.1
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 1.5e-107 394.0 421 55.3
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 1.5e-107 394.0 563 44.0
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 7.5e-107 391.7 350 60.3
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 2.2e-106 390.2 400 54.8
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 2.9e-106 389.8 395 54.9
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 2.9e-106 389.8 433 53.3
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 1.9e-105 387.1 492 48.4
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 1.9e-105 387.1 435 52.0
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 7.1e-105 385.2 351 59.5
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 9.2e-105 384.8 562 43.1
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.6e-104 384.0 401 54.4
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 6.0e-104 382.1 396 53.8
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 7.8e-104 381.7 435 51.5
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 1.7e-103 380.6 374 55.3
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 3.9e-103 379.4 521 48.2
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 5.1e-103 379.0 428 51.6
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 1.9e-102 377.1 316 61.1
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 4.3e-102 375.9 352 56.0
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 5.6e-102 375.6 573 41.4
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 9.5e-102 374.8 322 60.2
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 2.4e-100 370.2 459 48.6
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 1.5e-99 367.5 462 49.4
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 7.6e-99 365.2 419 51.6
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.3e-98 364.4 458 47.4
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.2e-98 363.6 473 47.6
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 1.9e-97 360.5 481 47.8
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 2.4e-97 360.1 480 46.7
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 2.1e-96 357.1 353 57.2
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 1.0e-95 354.8 479 45.9
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 1.9e-94 350.5 325 56.3
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 1.9e-94 350.5 408 48.5
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 3.3e-94 349.7 435 49.0
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 6.2e-93 345.5 455 46.4
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 2.4e-92 343.6 429 49.4
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 6.9e-92 342.0 433 47.1
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 6.9e-92 342.0 416 50.2
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 3.4e-91 339.7 301 57.5
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 5.3e-84 315.8 405 47.4
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 1.4e-81 307.8 350 52.6
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 3.3e-78 296.6 418 44.0
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 4.3e-78 296.2 279 57.0
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 9.6e-78 295.0 284 54.6
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 1.6e-72 277.7 417 41.2
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 4.0e-68 263.1 395 40.0
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 6.5e-66 255.8 295 47.8
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 8.5e-58 228.8 298 42.6
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 6.1e-56 222.6 424 38.7
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.0e-55 221.9 285 46.7
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 2.8e-53 213.8 418 36.1
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 3.1e-52 210.3 171 63.2
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 1.6e-48 198.0 204 51.0
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 3.0e-47 193.7 238 49.6
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.1e-46 191.8 277 45.1
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 1.3e-45 188.3 124 75.0
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 8.2e-45 185.7 166 59.6
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 1.1e-44 185.3 145 69.7
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 5.2e-39 166.4 231 43.7
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 5.2e-39 166.4 187 56.7
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 1.6e-35 154.8 230 37.4
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 2.6e-35 154.1 136 57.4
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 3.6e-32 143.7 148 54.7
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.5e-30 138.3 338 32.2
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.7e-27 127.5 120 55.8
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 1.0e-26 125.6 126 53.2
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 7.2e-25 119.4 263 33.5
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 1.2e-22 112.1 63 82.5
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 1.2e-22 112.1 88 62.5
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.8e-21 107.5 129 51.2
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.8e-21 107.5 129 51.2
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 1.0e-15 89.0 53 75.5
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 4.0e-15 87.0 64 59.4
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.6e-14 84.3 134 40.3
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 1.6e-11 75.1 45 77.8
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 7.8e-11 72.8 308 26.3
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 1.5e-09 68.6 50 64.0
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 3.3e-09 67.4 73 57.5
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 1.4e-07 62.0 148 31.1
Actinidia19446 Actinidia chinensis HOM05D005646 ORTHO05D006828 4.4e-06 57.0 143 36.4


User provided reference genes

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