Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.3e-185 652.9 319 100.0
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 5.9e-167 590.9 319 92.2
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 2.3e-142 509.2 320 80.3
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 6.6e-142 507.7 321 79.8
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 1.3e-134 483.4 321 77.6
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 9.2e-128 460.7 328 71.0
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 1.6e-127 459.9 331 71.0
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 8.6e-126 454.1 324 71.0
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 8.6e-126 454.1 324 71.0
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 1.9e-125 453.0 324 70.7
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 3.3e-125 452.2 331 69.2
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 4.3e-125 451.8 320 70.9
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 5.6e-125 451.4 320 71.2
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 1.7e-121 439.9 336 66.1
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 3.5e-119 432.2 334 65.3
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 2.1e-116 422.9 324 67.9
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.1e-115 420.6 335 63.9
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 1.8e-115 419.9 336 62.5
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 2.0e-114 416.4 338 63.9
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 5.8e-114 414.8 338 63.6
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 4.9e-113 411.8 335 63.6
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 8.4e-113 411.0 341 63.6
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 6.0e-111 404.8 336 61.9
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 5.1e-110 401.7 324 63.0
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 5.3e-107 391.7 338 61.2
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 5.3e-107 391.7 335 60.6
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 4.2e-104 382.1 357 56.9
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 4.6e-103 378.6 339 60.2
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 1.3e-102 377.1 338 58.3
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 1.3e-102 377.1 338 58.6
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 1.8e-102 376.7 338 58.9
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 2.3e-102 376.3 337 59.6
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 2.3e-102 376.3 338 58.9
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 3.9e-102 375.6 338 58.9
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.5e-101 372.9 338 58.3
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 3.3e-101 372.5 338 58.6
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 5.6e-101 371.7 337 59.1
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.1e-99 367.5 340 57.6
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 1.8e-99 366.7 338 58.6
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 2.4e-99 366.3 336 56.2
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 2.4e-99 366.3 339 57.5
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 4.0e-99 365.5 331 58.9
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 5.3e-99 365.2 331 58.9
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 6.9e-99 364.8 338 58.3
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 9.0e-99 364.4 331 58.6
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 9.0e-99 364.4 341 56.0
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.2e-98 364.0 337 56.7
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 2.0e-98 363.2 338 58.0
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.5e-98 362.1 338 56.2
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 5.8e-98 361.7 343 56.9
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 1.7e-97 360.1 379 52.8
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 2.9e-97 359.4 338 57.7
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 2.9e-97 359.4 336 57.4
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 3.8e-97 359.0 339 56.6
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 1.1e-96 357.5 336 54.8
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 1.4e-96 357.1 341 56.0
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 1.4e-96 357.1 340 56.2
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 2.5e-96 356.3 335 55.5
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.2e-96 355.9 338 56.2
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 4.2e-96 355.5 340 56.2
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 7.1e-96 354.8 332 55.7
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.2e-95 354.0 338 54.4
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.6e-95 353.6 340 56.2
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 1.6e-95 353.6 338 54.4
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 2.1e-95 353.2 339 52.8
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 2.1e-95 353.2 338 53.8
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 2.1e-95 353.2 338 54.4
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 2.1e-95 353.2 359 54.0
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 1.0e-94 350.9 340 56.5
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.8e-94 350.1 340 55.6
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 3.9e-94 349.0 336 55.4
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 1.9e-93 346.7 340 54.1
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 4.3e-93 345.5 339 54.0
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 9.6e-93 344.4 360 52.8
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 1.3e-92 344.0 339 52.8
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 1.3e-92 344.0 338 53.6
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 2.1e-92 343.2 342 53.5
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 2.8e-92 342.8 345 52.5
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 2.8e-92 342.8 339 54.6
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 3.7e-92 342.4 337 52.2
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 4.8e-92 342.0 345 53.3
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 8.2e-92 341.3 337 52.5
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 8.2e-92 341.3 346 51.7
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 4.1e-91 339.0 330 53.0
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 6.9e-91 338.2 339 51.9
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 1.2e-90 337.4 341 52.5
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.0e-90 336.7 330 53.6
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 2.6e-90 336.3 347 51.9
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 2.6e-90 336.3 341 52.8
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 3.4e-90 335.9 334 53.0
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.5e-90 335.5 339 51.0
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 5.8e-90 335.1 351 50.4
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 5.8e-90 335.1 338 50.3
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 5.8e-90 335.1 338 53.3
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 1.1e-88 330.9 317 52.7
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.5e-88 329.7 339 51.3
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 3.2e-88 329.3 339 52.2
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 7.2e-88 328.2 338 53.0
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 9.3e-88 327.8 338 52.1
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 1.2e-87 327.4 426 46.5
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 1.6e-87 327.0 339 51.9
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 2.7e-87 326.2 338 51.8
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 4.6e-87 325.5 338 50.9
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.5e-85 320.5 338 51.2
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 3.3e-85 319.3 339 50.1
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 5.7e-85 318.5 341 50.1
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 3.7e-84 315.8 338 50.3
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 6.3e-84 315.1 337 52.2
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 1.1e-83 314.3 334 51.2
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 9.0e-83 311.2 332 50.9
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.6e-82 309.7 366 48.4
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.6e-82 309.7 366 48.4
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 4.5e-82 308.9 342 49.7
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 4.5e-82 308.9 342 49.7
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 7.7e-82 308.1 311 52.7
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.0e-81 307.8 337 51.9
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 2.9e-81 306.2 334 49.4
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 3.8e-81 305.8 330 51.2
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.4e-80 303.9 326 50.3
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.2e-80 302.4 327 51.4
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 9.4e-80 301.2 321 50.8
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 9.4e-80 301.2 315 51.7
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 3.6e-79 299.3 321 50.8
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 3.3e-77 292.7 331 49.8
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 5.7e-77 292.0 330 49.4
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 7.4e-77 291.6 316 50.6
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 9.7e-77 291.2 243 58.8
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 1.3e-76 290.8 343 46.1
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.4e-72 277.3 272 54.4
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 9.4e-72 274.6 315 48.3
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 2.3e-70 270.0 315 47.0
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 3.3e-69 266.2 314 46.8
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 4.4e-69 265.8 250 57.6
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 5.7e-69 265.4 315 46.3
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.0e-65 254.6 255 53.3
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.0e-65 254.6 332 44.6
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.7e-65 253.8 228 57.9
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 1.7e-65 253.8 324 43.2
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.8e-62 243.8 231 55.0
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.0e-62 242.7 265 49.4
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 8.8e-62 241.5 342 39.8
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 5.7e-61 238.8 250 48.8
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 2.2e-60 236.9 265 47.9
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 7.7e-58 228.4 358 37.4
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 2.7e-55 219.9 325 44.0
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 6.8e-54 215.3 240 50.4
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 9.8e-53 211.5 360 36.1
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 4.1e-51 206.1 199 54.8
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 6.8e-46 188.7 188 53.2
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.7e-41 174.1 155 54.2
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 6.8e-38 162.2 275 38.5
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 2.6e-37 160.2 319 35.1
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 8.9e-30 135.2 317 33.1
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 1.9e-24 117.5 327 28.7
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 3.1e-22 110.2 332 27.4
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 8.9e-22 108.6 209 35.4
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 1.2e-21 108.2 209 34.4
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.3e-20 104.8 87 57.5
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 3.3e-16 90.1 297 28.3
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 9.5e-16 88.6 63 69.8
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 1.1e-14 85.1 71 57.7
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 1.6e-10 71.2 85 52.9
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.5e-08 64.7 76 51.3
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 7.3e-08 62.4 65 55.4
MCO07G315 Micromonas commoda HOM05D003933 ORTHO05D268710 2.1e-07 60.8 236 25.0
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 2.1e-07 60.8 68 52.9
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 6.2e-07 59.3 68 50.0
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 1.1e-06 58.5 35 77.1
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 5.2e-06 56.2 123 32.5
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 6.8e-06 55.8 78 44.9


User provided reference genes

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