Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20831_v3 Cicer arietinum L. HOM05D007675 ORTHO05D009699 3.4e-55 219.5 306 100.0
TPR.G29893 Trifolium pratense HOM05D007675 ORTHO05D009699 2.0e-39 167.2 270 84.4
Lj3g0001256 Lotus japonicus HOM05D007675 ORTHO05D009699 2.5e-37 160.2 92 81.5
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 2.8e-33 146.7 95 72.6
Medtr4g068800 Medicago truncatula HOM05D007675 ORTHO05D009699 6.3e-33 145.6 95 71.6
Glyma.11G122100 Glycine max HOM05D007675 ORTHO05D009699 8.2e-33 145.2 87 80.5
Psat7g206160 Pisum sativum HOM05D007675 ORTHO05D009699 8.2e-33 145.2 270 60.4
Psat6g221080 Pisum sativum HOM05D007675 ORTHO05D009699 1.4e-32 144.4 270 80.7
Lalb_Chr03g0025891 Lupinus albus HOM05D007675 ORTHO05D009699 4.5e-31 139.4 87 78.2
VMungo1127G1032 Vigna mungo HOM05D007675 ORTHO05D009699 1.0e-30 138.3 87 73.6
Phvul.011G049000 Phaseolus vulgaris HOM05D007675 ORTHO05D009699 3.8e-30 136.3 87 72.4
arahy.Tifrunner.gnm1.ann1.C1QAGZ Arachis hypogaea HOM05D007675 ORTHO05D009699 1.8e-27 127.5 92 67.4
arahy.Tifrunner.gnm1.ann1.F8FJH0 Arachis hypogaea HOM05D007675 ORTHO05D009699 4.0e-27 126.3 92 66.3
Thecc.02G030300 Theobroma cacao HOM05D007675 ORTHO05D009699 6.8e-19 99.0 93 50.5
Cpa.g.sc62.93 Carica papaya HOM05D007675 ORTHO05D009699 4.4e-18 96.3 92 52.2
Dinv23568 Davidia involucrata HOM05D007675 ORTHO05D009699 5.7e-18 95.9 93 50.5
Actinidia12984 Actinidia chinensis HOM05D007675 ORTHO05D009699 7.5e-18 95.5 92 51.1
PGR042G1965 Punica granatum HOM05D007675 ORTHO05D009699 7.5e-18 95.5 93 52.7
Cfa004966 Carpinus fangiana HOM05D007675 ORTHO05D009699 9.8e-18 95.1 87 57.5
Eucgr.I01233 Eucalyptus grandis HOM05D007675 ORTHO05D009699 2.2e-17 94.0 93 52.7
Gohir.A01G181200 Gossypium hirsutum HOM05D007675 ORTHO05D009699 2.2e-17 94.0 94 52.1
Prupe.8G107700 Prunus persica HOM05D007675 ORTHO05D009699 2.2e-17 94.0 92 50.0
ClCG09G017910 Citrullus lanatus HOM05D007675 ORTHO05D009699 4.9e-17 92.8 88 54.5
Atru.chr5.2909 Acer truncatum HOM05D007675 ORTHO05D009699 1.8e-16 90.9 93 48.4
Gohir.D01G172300 Gossypium hirsutum HOM05D007675 ORTHO05D009699 4.1e-16 89.7 94 50.0
MD10G1084800 Malus domestica HOM05D007675 ORTHO05D009699 4.1e-16 89.7 92 46.7
Potri.004G149400 Populus trichocarpa HOM05D007675 ORTHO05D009699 4.1e-16 89.7 94 48.9
HanXRQChr04g0128461 Helianthus annuus HOM05D007675 ORTHO05D009699 5.4e-16 89.4 87 48.3
MELO3C021959.2 Cucumis melo HOM05D007675 ORTHO05D009699 7.0e-16 89.0 94 47.9
QL11p039609 Quercus lobata HOM05D007675 ORTHO05D009699 7.0e-16 89.0 95 51.6
RcHm_v2.0_Chr6g0245191 Rosa chinensis HOM05D007675 ORTHO05D009699 7.0e-16 89.0 94 52.1
Gorai.002G213900 Gossypium raimondii HOM05D007675 ORTHO05D009699 1.2e-15 88.2 94 48.9
TAR623G1478 Trochodendron aralioides HOM05D007675 ORTHO05D009699 1.2e-15 88.2 92 48.9
FvH4_2g02001 Fragaria vesca HOM05D007675 ORTHO05D009699 2.0e-15 87.4 94 50.0
Cc02_g18070 Coffea canephora HOM05D007675 ORTHO05D009699 3.5e-15 86.7 93 48.4
CsaV3_2G014520 Cucumis sativus L. HOM05D007675 ORTHO05D009699 3.5e-15 86.7 88 50.0
Nn5g29449 Nelumbo nucifera HOM05D007675 ORTHO05D009699 4.5e-15 86.3 93 49.5
Ciclev10028281m.g Citrus clementina HOM05D007675 ORTHO05D009699 5.9e-15 85.9 93 46.2
Migut.N01220 Erythranthe guttata HOM05D007675 ORTHO05D009699 7.7e-15 85.5 93 45.2
FAN15G2036 Fragaria x ananassa HOM05D007675 ORTHO05D009699 7.7e-15 85.5 92 47.8
Potri.009G110400 Populus trichocarpa HOM05D007675 ORTHO05D009699 7.7e-15 85.5 94 46.8
Haze_02434 Corylus avellana HOM05D007675 ORTHO05D009699 1.0e-14 85.1 88 54.5
Lj5P203T17 Lonicera japonica HOM05D007675 ORTHO05D009699 1.0e-14 85.1 93 44.1
Rhsim11G0171900 Rhododendron simsii HOM05D007675 ORTHO05D009699 1.0e-14 85.1 92 46.7
Sabra04G0099300 Salix brachista HOM05D007675 ORTHO05D009699 1.7e-14 84.3 93 45.2
Aqoxy5G01397 Aquilegia oxysepala HOM05D007675 ORTHO05D009699 2.3e-14 84.0 93 50.5
THA.LOC104804364 Tarenaya hassleriana HOM05D007675 ORTHO05D009699 3.8e-14 83.2 91 44.0
Sc14g0001640 Simmondsia chinensis HOM05D007675 ORTHO05D009699 8.6e-14 82.0 92 41.3
ECA246G0465 Erigeron canadensis HOM05D007675 ORTHO05D009699 1.5e-13 81.3 95 44.2
Rhsim07G0245100 Rhododendron simsii HOM05D007675 ORTHO05D009699 1.5e-13 81.3 92 46.7
Lsat_1_v5_gn_1_38361 Lactuca sativa HOM05D007675 ORTHO05D009699 1.9e-13 80.9 93 41.9
Aqoxy5G01741 Aquilegia oxysepala HOM05D007675 ORTHO05D009699 3.3e-13 80.1 93 48.4
Aa31LG8G13490 Aethionema arabicum HOM05D007675 ORTHO05D009699 4.2e-13 79.7 91 44.0
CARHR106300 Cardamine hirsuta HOM05D007675 ORTHO05D009699 4.2e-13 79.7 92 42.4
Rhsim03G0146100 Rhododendron simsii HOM05D007675 ORTHO05D009699 5.5e-13 79.3 94 46.8
CDE04G1316 Ceratophyllum demersum HOM05D007675 ORTHO05D009699 7.2e-13 79.0 92 46.7
Sed0019685 Sechium edule HOM05D007675 ORTHO05D009699 1.2e-12 78.2 87 46.0
TWI79G0081 Tripterygium wilfordii HOM05D007675 ORTHO05D009699 8.0e-12 75.5 95 44.2
EL10Ac9g21777 Beta vulgaris HOM05D007675 ORTHO05D009699 1.4e-11 74.7 92 42.4
SalBow3G0197 Salvia bowleyana HOM05D007675 ORTHO05D009699 1.4e-11 74.7 93 40.9
Solyc10g051010.3 Solanum lycopersicum HOM05D007675 ORTHO05D009699 1.4e-11 74.7 87 41.4
PGSC0003DMG400008266 Solanum tuberosum HOM05D007675 ORTHO05D009699 6.8e-11 72.4 93 41.9
Manes.15G146700 Manihot esculenta HOM05D007675 ORTHO05D009699 8.9e-11 72.0 94 43.6
Sp3g29280 Schrenkiella parvula HOM05D007675 ORTHO05D009699 8.9e-11 72.0 86 43.0
AT2G15980 Arabidopsis thaliana HOM05D007675 ORTHO05D009699 1.2e-10 71.6 86 40.7
AUR62016675 Chenopodium quinoa HOM05D007675 ORTHO05D009699 1.2e-10 71.6 92 42.4
C07p07790 Brassica napus HOM05D007675 ORTHO05D009699 3.4e-10 70.1 89 40.4
Sopen10g022700 Solanum pennellii HOM05D007675 ORTHO05D009699 3.4e-10 70.1 84 40.5
AUR62011385 Chenopodium quinoa HOM05D007675 ORTHO05D009699 4.4e-10 69.7 92 41.3
Thhalv10022658m.g Eutrema salsugineum HOM05D007675 ORTHO05D009699 4.4e-10 69.7 86 40.7
MBI04_g06224_MAGBIO Magnolia biondii HOM05D000250 ORTHO05D002477 4.4e-10 69.7 93 40.9
BolC7t41197H Brassica oleracea HOM05D007675 ORTHO05D009699 5.7e-10 69.3 89 40.4
CiPaw.05G059700 Carya illinoinensis HOM05D007675 ORTHO05D009699 7.5e-10 68.9 93 44.1
BcaC06g36105 Brassica carinata HOM05D007675 ORTHO05D009699 9.8e-10 68.6 86 41.9
A07p04830 Brassica napus HOM05D007675 ORTHO05D009699 9.8e-10 68.6 86 44.2
BraA07t28274Z Brassica rapa HOM05D007675 ORTHO05D009699 9.8e-10 68.6 86 44.2
Carub.0003s2985 Capsella rubella HOM05D007675 ORTHO05D009699 9.8e-10 68.6 86 40.7
CAN.G630.43 Capsicum annuum HOM05D007675 ORTHO05D009699 1.3e-09 68.2 92 37.0
CSS0027680 Camellia sinensis var. sinensis HOM05D007675 ORTHO05D009699 4.9e-09 66.2 92 37.0
MSTRG.27711 Avicennia marina HOM05D007675 ORTHO05D009699 1.8e-08 64.3 93 36.6
SHI05443 Sapria himalayana HOM05D007675 ORTHO05D009699 4.1e-08 63.2 92 38.0
HPP92_017783 Vanilla planifolia HOM05D007675 ORTHO05D009699 1.2e-07 61.6 92 35.9
Ah.01g019740 Amaranthus hybridus HOM05D007675 ORTHO05D009699 2.0e-07 60.8 92 37.0
DCAR_022084 Daucus carota HOM05D007675 ORTHO05D009699 2.7e-07 60.5 77 35.1
Nitab4.5_0001361g0100 Nicotiana tabacum HOM05D007675 ORTHO05D009699 3.5e-07 60.1 83 37.3
ATR0733G100 Amborella trichopoda HOM05D007675 ORTHO05D009699 6.6e-06 55.8 92 29.3


User provided reference genes

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