Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 6.3e-123 444.1 226 100.0
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 6.2e-70 268.1 224 70.1
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 5.1e-64 248.4 230 65.2
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 6.7e-64 248.1 231 65.4
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 1.1e-63 247.3 237 62.9
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 1.0e-59 234.2 223 61.9
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 3.8e-59 232.3 237 57.8
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 2.5e-58 229.6 230 59.1
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 4.2e-50 202.2 246 53.3
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.3e-47 192.6 162 63.6
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 2.2e-46 189.9 227 52.9
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.2e-44 184.1 214 51.4
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 4.5e-44 182.2 167 58.7
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.2e-43 179.9 164 57.3
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 3.8e-43 179.1 163 57.7
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 6.5e-43 178.3 213 48.4
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.1e-42 177.6 161 57.8
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 1.4e-42 177.2 156 57.1
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 3.2e-42 176.0 163 57.1
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 5.5e-42 175.3 206 50.0
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 9.4e-42 174.5 163 55.2
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 1.2e-41 174.1 180 51.1
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.1e-41 173.3 164 54.9
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 4.6e-41 172.2 151 57.6
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.0e-40 171.0 164 54.3
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.4e-40 170.6 163 54.0
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.3e-40 169.9 165 53.3
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 3.0e-40 169.5 120 71.7
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 3.9e-40 169.1 227 46.7
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 5.1e-40 168.7 164 59.1
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 5.1e-40 168.7 183 51.4
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 8.8e-40 167.9 158 56.3
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 1.1e-39 167.5 162 58.0
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 2.0e-39 166.8 231 44.2
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 2.0e-39 166.8 164 53.7
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 5.7e-39 165.2 161 55.9
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 2.2e-38 163.3 165 56.4
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 2.2e-38 163.3 183 48.1
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 2.8e-38 162.9 161 55.9
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.8e-38 162.9 187 48.1
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 8.2e-38 161.4 179 47.5
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.4e-37 160.6 158 55.1
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 1.5e-36 157.1 185 48.6
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 2.0e-36 156.8 182 47.3
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 5.9e-36 155.2 193 45.6
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 1.3e-35 154.1 164 49.4
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.3e-35 154.1 164 49.4
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 5.0e-35 152.1 164 48.8
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 1.4e-34 150.6 233 40.8
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.0e-32 142.9 160 50.0
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 3.9e-32 142.5 164 47.6
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 5.1e-32 142.1 164 47.6
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 5.1e-32 142.1 198 41.4
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 1.1e-31 141.0 157 51.0
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 2.6e-31 139.8 207 41.5
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 2.6e-31 139.8 153 50.3
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 1.4e-29 134.0 161 45.3
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.8e-29 133.7 161 44.1
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 5.3e-29 132.1 163 45.4
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 9.1e-29 131.3 158 46.8
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 2.0e-28 130.2 127 52.8
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 1.3e-27 127.5 144 50.0
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 1.5e-26 124.0 165 42.4
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 4.2e-26 122.5 157 45.9
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 9.4e-26 121.3 203 39.4
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 1.3e-22 110.9 118 50.8
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 3.7e-22 109.4 132 47.7
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 4.1e-21 105.9 155 40.6
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 5.3e-21 105.5 154 40.9
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 2.0e-20 103.6 147 44.9
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 4.5e-20 102.4 154 40.9
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 2.9e-19 99.8 121 44.6
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 3.8e-19 99.4 121 44.6
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 5.0e-19 99.0 96 52.1
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 8.5e-19 98.2 80 61.2
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 7.2e-18 95.1 147 38.8
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 2.1e-17 93.6 85 55.3
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 2.7e-17 93.2 130 37.7
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.7e-17 92.4 77 58.4
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 8.0e-17 91.7 85 55.3
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 4.0e-16 89.4 99 47.5
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 3.4e-15 86.3 117 41.0
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 5.7e-15 85.5 158 35.4
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 1.3e-14 84.3 66 65.2
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 1.3e-14 84.3 66 65.2
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 3.7e-14 82.8 130 37.7
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 3.7e-14 82.8 130 37.7
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 6.3e-14 82.0 172 33.7
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 8.3e-14 81.6 114 42.1
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 1.4e-13 80.9 154 31.2
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.4e-13 80.1 154 32.5
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 4.1e-13 79.3 157 33.8
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 5.4e-13 79.0 154 31.8
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 7.0e-13 78.6 154 30.5
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 7.0e-13 78.6 154 31.8
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 7.0e-13 78.6 142 31.0
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 9.1e-13 78.2 157 31.8
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 9.1e-13 78.2 155 29.0
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.2e-12 77.8 129 31.0
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 1.2e-12 77.8 166 29.5
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.2e-12 77.8 152 32.2
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.6e-12 77.4 124 40.3
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.7e-12 76.6 114 41.2
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.7e-12 76.6 151 32.5
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 3.5e-12 76.3 168 32.1
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 4.5e-12 75.9 153 31.4
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 4.5e-12 75.9 153 30.1
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.9e-12 75.5 82 48.8
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 7.7e-12 75.1 153 30.1
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 7.7e-12 75.1 186 30.1
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 1.0e-11 74.7 146 30.8
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 1.3e-11 74.3 154 28.6
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.7e-11 73.9 152 31.6
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.7e-11 73.9 153 29.4
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 2.2e-11 73.6 117 32.5
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 2.9e-11 73.2 148 31.1
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 2.9e-11 73.2 156 29.5
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 2.9e-11 73.2 165 31.5
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 2.9e-11 73.2 157 33.1
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.8e-11 72.8 180 27.8
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 3.8e-11 72.8 202 26.7
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 5.0e-11 72.4 153 29.4
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 5.0e-11 72.4 158 27.2
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 5.0e-11 72.4 156 26.3
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 5.0e-11 72.4 152 30.3
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 6.5e-11 72.0 158 26.6
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 6.5e-11 72.0 164 29.3
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 6.5e-11 72.0 170 28.2
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 6.5e-11 72.0 151 31.1
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 8.5e-11 71.6 152 30.3
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.1e-10 71.2 174 29.9
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 1.1e-10 71.2 138 26.8
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.1e-10 71.2 125 28.8
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.1e-10 71.2 165 29.1
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 1.1e-10 71.2 154 28.6
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.1e-10 71.2 139 31.7
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 1.1e-10 71.2 159 32.7
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.5e-10 70.9 165 29.1
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 2.5e-10 70.1 203 27.6
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 3.2e-10 69.7 160 27.5
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.2e-10 69.7 195 28.2
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 4.2e-10 69.3 141 29.8
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.2e-10 69.3 191 29.3
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 2.7e-09 66.6 152 30.9
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 3.6e-09 66.2 125 31.2
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 4.7e-09 65.9 154 31.8
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 5.2e-08 62.4 156 28.2
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.2e-07 61.2 114 31.6
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 1.7e-06 57.4 90 38.9
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 8.3e-06 55.1 210 23.8


User provided reference genes

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