Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 0.0e+00 1135.2 565 100.0
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 5.7e-282 973.8 569 86.1
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 5.9e-279 963.8 567 86.8
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 2.4e-264 915.2 569 82.1
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 8.9e-259 896.7 551 80.9
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 2.2e-257 892.1 571 79.5
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.4e-256 888.6 564 80.5
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 4.1e-256 887.9 576 80.2
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 6.0e-255 884.0 556 80.2
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 3.0e-254 881.7 507 86.0
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 3.9e-254 881.3 525 85.0
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 2.1e-247 859.0 520 82.1
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 6.6e-246 854.0 567 76.4
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 7.3e-245 850.5 568 76.1
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 6.6e-238 827.4 612 71.1
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.6e-228 796.2 490 80.2
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 1.3e-220 770.0 539 70.7
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 4.1e-219 765.0 489 75.7
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.2e-216 755.4 490 76.9
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 5.5e-216 754.6 486 74.1
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 9.3e-216 753.8 507 72.4
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 3.3e-213 745.3 536 69.4
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 8.2e-212 740.7 504 73.0
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 1.2e-210 736.9 533 68.3
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 2.0e-210 736.1 489 73.4
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 2.6e-210 735.7 556 66.5
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 1.3e-209 733.4 533 67.7
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 7.2e-208 727.6 527 67.4
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 7.2e-208 727.6 514 69.6
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 1.2e-207 726.9 486 72.6
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 1.6e-207 726.5 487 71.5
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 6.1e-207 724.5 503 68.6
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 6.7e-206 721.1 517 69.1
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 1.5e-205 719.9 530 67.9
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 2.6e-205 719.2 546 65.9
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.6e-205 719.2 524 67.2
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 9.7e-205 717.2 526 67.3
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.3e-204 716.8 524 66.8
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.8e-204 715.7 526 66.7
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 3.7e-204 715.3 553 64.0
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.8e-203 713.0 524 68.5
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 6.9e-203 711.1 507 70.2
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 9.1e-203 710.7 531 65.2
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 7.7e-202 707.6 574 62.5
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.0e-201 707.2 489 71.0
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 1.7e-201 706.4 532 67.7
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 2.5e-200 702.6 526 65.6
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 9.4e-200 700.7 486 68.9
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 1.2e-199 700.3 470 71.1
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.2e-199 700.3 506 67.0
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 2.1e-199 699.5 553 63.3
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 6.7e-198 694.5 488 69.7
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 1.3e-196 690.3 485 69.9
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 2.2e-196 689.5 505 67.1
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.4e-195 686.8 529 67.1
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 1.8e-195 686.4 492 68.1
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 3.1e-195 685.6 484 68.6
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 7.0e-195 684.5 484 69.0
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 7.2e-192 674.5 548 60.4
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.4e-192 674.1 506 65.2
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 2.7e-191 672.5 511 65.8
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 3.0e-190 669.1 523 62.0
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.2e-189 667.2 484 67.6
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.2e-189 667.2 527 63.2
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 2.6e-189 666.0 508 62.8
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.7e-188 663.3 513 64.5
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.1e-187 660.6 475 68.8
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 1.1e-187 660.6 516 65.3
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 4.1e-187 658.7 542 60.7
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 7.0e-187 657.9 515 63.3
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 7.7e-186 654.4 522 60.9
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 5.5e-184 648.3 567 59.3
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 4.7e-183 645.2 527 61.3
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 5.2e-182 641.7 507 63.7
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.5e-181 640.2 499 64.5
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 2.9e-177 625.9 418 73.0
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 5.0e-177 625.2 507 62.5
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.5e-177 624.4 553 58.6
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 1.9e-176 623.2 502 61.0
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 8.0e-175 617.8 543 59.3
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 1.0e-174 617.5 534 58.6
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 4.4e-173 612.1 486 63.8
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 2.8e-172 609.4 493 60.0
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.8e-171 606.7 487 60.8
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 5.0e-169 598.6 483 60.2
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.9e-168 596.7 520 56.7
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 1.0e-166 590.9 467 62.3
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 5.2e-166 588.6 522 55.9
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.9e-166 587.8 491 60.3
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 1.2e-165 587.4 487 60.4
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 4.4e-165 585.5 487 59.5
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.4e-165 585.5 499 59.9
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.2e-164 583.2 535 56.3
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.1e-163 580.9 544 58.3
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.4e-163 580.5 322 87.6
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.9e-160 570.1 384 71.9
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 2.1e-159 566.6 521 55.7
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.2e-155 552.7 496 56.2
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 3.2e-155 552.7 495 55.2
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 3.0e-153 546.2 524 53.4
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 1.1e-152 544.3 526 54.4
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.5e-149 533.9 452 57.3
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.3e-148 530.8 430 64.7
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 4.9e-148 528.9 454 60.8
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 2.7e-146 523.1 499 54.7
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.0e-145 519.6 536 53.5
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 2.5e-144 516.5 393 64.4
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.2e-143 514.2 501 56.3
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 4.0e-142 509.2 504 51.0
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 2.6e-141 506.5 480 55.4
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 4.4e-141 505.8 488 54.5
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 6.4e-140 501.9 489 54.0
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 1.1e-139 501.1 455 53.2
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 3.5e-138 496.1 508 49.0
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 1.5e-136 490.7 494 50.0
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 2.9e-132 476.5 328 70.4
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 4.9e-132 475.7 395 58.5
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.5e-128 463.4 342 65.5
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.0e-121 439.9 293 70.6
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 1.5e-120 437.6 397 59.4
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.8e-119 433.3 457 50.3
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 4.8e-119 432.6 331 65.0
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.4e-118 430.3 336 64.6
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 4.0e-110 402.9 331 60.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.6e-109 400.2 641 37.3
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.1e-107 392.1 341 56.3
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 1.2e-106 391.3 435 50.6
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 1.6e-106 391.0 413 51.6
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.5e-104 383.6 281 66.2
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 9.7e-88 328.6 457 42.0
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 5.3e-86 322.8 227 63.9
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.5e-80 304.7 237 58.6
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 1.5e-80 304.7 186 80.6
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.4e-80 302.4 278 52.5
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 2.5e-75 287.3 612 33.3
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.6e-74 284.6 349 45.3
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 1.8e-65 254.6 257 52.5
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 4.0e-65 253.4 158 74.7
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 2.0e-64 251.1 185 65.4
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.7e-64 249.6 164 69.5
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.7e-63 248.1 192 61.5
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.2e-63 247.7 164 68.9
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 1.4e-62 245.0 466 35.0
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 1.1e-59 235.3 148 74.3
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-54 218.0 194 50.5
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 3.8e-52 210.3 192 59.9
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.5e-51 208.4 148 66.9
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 1.5e-51 208.4 125 78.4
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.1e-46 192.2 148 64.2
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.2e-42 178.7 186 52.2
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-41 174.9 196 49.5
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.9e-41 172.6 130 63.8
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.0e-40 171.4 171 48.0
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-39 168.7 118 68.6
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.1e-34 149.4 140 56.4
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.6e-32 144.4 107 62.6
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.1e-22 112.5 74 68.9
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-21 109.0 121 44.6
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.1e-18 98.2 74 68.9
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 2.0e-16 91.7 74 66.2
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 7.6e-16 89.7 66 59.1
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 1.6e-10 72.0 57 63.2


User provided reference genes

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