Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 6.0e-266 920.2 447 100.0
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.4e-209 733.0 447 79.2
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 2.0e-205 719.2 447 77.0
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 5.9e-197 691.0 447 74.0
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 8.5e-188 660.6 447 71.4
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 1.6e-186 656.4 447 70.0
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 3.6e-186 655.2 448 71.0
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 1.4e-185 653.3 447 69.6
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.2e-184 650.2 445 71.2
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 3.5e-181 638.6 423 72.6
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 4.0e-177 625.2 384 79.2
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 2.4e-166 589.3 447 63.3
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 2.1e-162 576.2 447 62.9
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 3.6e-162 575.5 447 62.2
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.8e-161 573.2 447 63.8
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 3.1e-161 572.4 445 63.6
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 3.4e-160 568.9 448 61.6
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 3.4e-160 568.9 430 65.6
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 3.7e-159 565.5 446 61.0
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 3.7e-159 565.5 447 62.2
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 3.7e-159 565.5 447 62.2
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 4.9e-159 565.1 447 62.0
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 4.9e-159 565.1 449 61.5
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 6.4e-159 564.7 446 60.8
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 6.4e-159 564.7 452 61.5
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.1e-158 563.9 446 60.5
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.9e-158 563.1 447 63.3
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 4.1e-158 562.0 447 60.6
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 5.4e-158 561.6 448 61.4
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 2.0e-157 559.7 447 60.4
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 2.7e-157 559.3 447 61.1
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 6.0e-157 558.1 447 61.1
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 1.0e-156 557.4 447 60.6
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 3.9e-156 555.4 480 58.5
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 5.0e-156 555.1 447 59.5
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 5.0e-156 555.1 448 60.9
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.5e-155 552.7 447 60.9
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 3.3e-155 552.4 447 60.6
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 4.3e-155 552.0 447 59.3
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 4.3e-155 552.0 492 56.5
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 7.3e-155 551.2 393 67.9
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 9.5e-155 550.8 447 60.0
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 9.5e-155 550.8 447 59.3
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 9.5e-155 550.8 447 60.9
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 2.1e-154 549.7 447 60.2
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 2.8e-154 549.3 448 61.4
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 2.3e-153 546.2 447 59.3
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 5.2e-153 545.0 448 59.6
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 1.5e-152 543.5 446 59.9
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 2.6e-152 542.7 459 57.5
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 4.4e-152 542.0 448 59.4
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 9.8e-152 540.8 448 59.2
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 9.8e-152 540.8 445 60.2
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.2e-151 539.7 448 58.9
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.2e-151 539.7 447 59.5
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 4.9e-151 538.5 448 59.2
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 9.2e-150 534.3 446 58.1
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 9.2e-150 534.3 447 57.9
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 1.2e-149 533.9 447 57.9
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 2.7e-149 532.7 446 58.7
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.0e-148 530.8 422 60.9
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 1.0e-148 530.8 447 58.8
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 3.9e-148 528.9 450 57.8
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 4.3e-147 525.4 447 57.5
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 2.8e-146 522.7 445 57.5
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 4.7e-146 521.9 447 56.6
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 4.0e-145 518.8 447 57.0
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 2.0e-144 516.5 445 56.6
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.7e-143 513.5 447 57.9
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 8.3e-143 511.1 448 55.8
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 3.2e-142 509.2 447 57.7
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 2.1e-141 506.5 448 54.9
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 4.6e-141 505.4 447 55.0
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 5.1e-140 501.9 445 56.0
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 1.5e-139 500.4 462 55.0
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.9e-139 500.0 447 56.4
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 1.2e-138 497.3 445 55.5
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 1.6e-138 496.9 447 54.8
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 6.2e-138 495.0 447 55.3
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 4.0e-137 492.3 447 55.5
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 4.0e-137 492.3 447 55.5
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.0e-136 490.0 421 59.1
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.0e-136 490.0 445 54.8
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 2.0e-136 490.0 444 54.7
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 1.7e-135 486.9 447 54.8
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 1.7e-135 486.9 447 54.8
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 6.4e-135 485.0 404 58.4
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 7.1e-134 481.5 368 65.8
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 1.0e-132 477.6 386 60.6
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.0e-132 476.1 373 63.3
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.9e-131 473.4 442 55.9
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 5.6e-131 471.9 451 54.3
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 5.3e-129 465.3 447 54.6
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 6.9e-129 464.9 385 61.3
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 2.6e-128 463.0 447 52.6
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 8.4e-127 458.0 445 52.1
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 3.2e-126 456.1 447 51.5
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 9.0e-121 438.0 370 60.3
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 5.8e-120 435.3 450 50.4
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 4.9e-119 432.2 448 50.2
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 4.9e-119 432.2 448 50.2
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 4.9e-119 432.2 448 50.2
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 4.9e-119 432.2 447 50.6
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.1e-118 431.0 388 54.6
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.3e-116 424.1 471 48.0
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 7.4e-115 418.3 447 50.1
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.1e-114 416.8 448 48.7
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.3e-111 407.5 322 63.0
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.7e-111 407.1 466 47.0
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 2.5e-110 403.3 450 48.2
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 3.2e-110 402.9 420 49.5
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 4.0e-105 386.0 440 48.2
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 3.9e-92 342.8 311 54.7
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 1.1e-91 341.3 450 41.8
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 8.2e-90 335.1 450 43.8
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.4e-89 334.3 311 55.3
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 5.3e-89 332.4 439 41.0
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 3.2e-86 323.2 373 48.8
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 6.1e-85 318.9 445 39.3
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 8.8e-84 315.1 231 66.2
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.7e-82 310.8 441 39.9
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 5.3e-81 305.8 429 38.0
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 6.5e-79 298.9 247 57.5
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 5.5e-78 295.8 450 40.4
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.1e-77 293.9 449 39.0
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.6e-72 276.9 186 71.5
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 5.0e-71 272.7 385 41.3
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.6e-64 251.1 235 58.3
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 1.3e-63 248.1 312 46.2
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 1.4e-52 211.5 487 31.6
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 5.7e-51 206.1 145 67.6
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 4.9e-50 203.0 517 29.8
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.5e-48 196.8 149 59.1
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 5.2e-36 156.4 137 56.2
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 3.0e-31 140.6 100 63.0
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 6.6e-31 139.4 502 29.5
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 2.8e-21 107.5 100 51.0
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 5.2e-20 103.2 72 62.5
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 6.8e-20 102.8 93 57.0
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 4.3e-14 83.6 69 59.4
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 2.2e-10 71.2 92 44.6
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 4.3e-06 57.0 101 30.7
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 9.6e-06 55.8 127 33.1


User provided reference genes

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