Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.9e-259 898.7 462 100.0
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 9.1e-201 703.7 451 79.4
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 1.1e-182 643.7 451 75.6
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 8.3e-170 600.9 457 70.2
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 4.0e-164 582.0 456 65.6
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 3.7e-162 575.5 456 65.1
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 8.3e-162 574.3 474 64.6
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 1.6e-160 570.1 428 68.2
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 9.5e-158 560.8 473 64.3
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 4.6e-152 542.0 448 62.5
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 2.1e-149 533.1 552 56.2
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 1.1e-145 520.8 444 60.6
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 9.5e-142 507.7 447 60.2
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 9.5e-142 507.7 428 60.3
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.8e-140 503.4 400 64.2
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 6.8e-140 501.5 444 59.5
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 4.2e-129 465.7 443 55.8
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 6.0e-128 461.8 444 55.9
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 4.0e-124 449.1 438 53.2
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 2.5e-118 429.9 427 51.8
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 3.6e-117 426.0 418 55.5
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 1.1e-113 414.5 457 50.1
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 6.0e-112 408.7 434 49.5
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 5.1e-111 405.6 451 49.2
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 5.1e-111 405.6 420 51.4
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 8.7e-111 404.8 464 48.1
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 1.4e-108 397.5 550 43.1
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 6.9e-108 395.2 448 47.8
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 2.6e-107 393.3 467 45.4
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 1.7e-106 390.6 425 46.8
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 1.4e-105 387.5 413 50.8
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 7.1e-105 385.2 361 56.8
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 9.3e-105 384.8 387 55.0
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.5e-104 382.9 427 46.1
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 3.0e-103 379.8 370 52.7
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 1.1e-102 377.9 283 69.6
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.2e-96 357.8 449 46.3
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 2.7e-96 356.7 374 51.9
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.0e-95 354.8 419 47.5
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.3e-95 354.4 314 56.4
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.8e-95 354.0 398 46.5
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 1.9e-94 350.5 470 42.6
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 7.4e-94 348.6 455 42.2
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.7e-94 348.2 334 52.7
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.2e-93 347.1 322 55.3
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 6.3e-93 345.5 448 44.0
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 5.3e-92 342.4 474 41.8
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 6.9e-92 342.0 445 44.3
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 2.6e-91 340.1 453 45.5
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 3.4e-91 339.7 269 62.1
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 1.3e-90 337.8 447 42.7
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 1.7e-90 337.4 466 42.3
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 6.5e-90 335.5 402 45.0
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 2.7e-88 330.1 440 43.2
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.8e-87 327.4 342 53.2
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.7e-87 325.5 313 54.0
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.7e-87 325.5 305 55.1
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 8.8e-87 325.1 467 40.9
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 9.7e-86 321.6 467 40.5
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 9.7e-86 321.6 440 41.1
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.8e-85 320.1 313 53.0
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.4e-84 317.0 321 51.4
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 4.1e-84 316.2 438 40.9
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 2.0e-83 313.9 308 52.9
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 2.6e-83 313.5 426 42.5
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 4.5e-83 312.8 347 49.3
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 4.5e-83 312.8 479 41.1
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 7.7e-83 312.0 418 42.1
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 6.5e-82 308.9 326 50.0
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 1.4e-81 307.8 455 39.8
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 9.4e-81 305.1 463 39.5
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 6.1e-80 302.4 314 51.0
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.0e-79 301.6 283 54.4
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 2.6e-78 297.0 585 34.9
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 7.4e-78 295.4 307 50.8
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 9.7e-78 295.0 359 45.4
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 3.5e-75 286.6 427 40.3
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 4.5e-75 286.2 303 50.8
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 2.2e-74 283.9 366 42.9
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 6.1e-72 275.8 328 43.0
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 5.2e-71 272.7 460 38.0
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 5.2e-71 272.7 470 38.3
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.0e-70 270.8 301 49.8
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 3.3e-70 270.0 307 46.9
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 4.4e-70 269.6 330 43.6
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 4.8e-69 266.2 330 42.7
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.1e-68 261.9 219 58.0
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 1.2e-67 261.5 448 38.2
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.0e-67 260.8 266 51.5
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 5.9e-67 259.2 363 43.5
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 5.9e-67 259.2 305 46.6
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 8.5e-66 255.4 401 39.9
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 8.5e-66 255.4 305 45.2
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 8.5e-66 255.4 315 46.0
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 1.5e-65 254.6 403 39.7
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 3.2e-65 253.4 309 42.7
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 4.2e-65 253.1 314 42.0
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 5.5e-65 252.7 437 40.7
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 2.1e-64 250.8 430 39.5
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 3.6e-64 250.0 311 43.1
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 4.7e-64 249.6 309 43.4
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 2.3e-63 247.3 336 43.5
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 4.0e-63 246.5 308 42.9
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 8.8e-63 245.4 399 36.1
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 9.8e-62 241.9 309 41.1
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 9.8e-62 241.9 316 43.0
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 1.3e-61 241.5 311 40.5
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 1.1e-60 238.4 310 41.0
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 1.4e-60 238.0 309 40.8
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.8e-60 237.7 311 39.9
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.6e-59 234.6 316 43.4
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 5.9e-59 232.6 455 34.9
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 7.7e-59 232.3 306 42.5
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 3.6e-56 223.4 201 57.2
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 6.1e-56 222.6 301 41.2
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 4.0e-55 219.9 313 40.6
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 6.8e-55 219.2 270 44.1
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 1.5e-54 218.0 280 42.5
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 5.7e-54 216.1 270 43.3
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 3.5e-51 206.8 304 40.5
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 6.6e-50 202.6 310 40.3
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 6.4e-45 186.0 313 34.8
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.4e-44 184.9 230 43.9
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.0e-42 177.2 188 50.0
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.0e-42 177.2 188 50.0
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.8e-39 167.9 183 44.8
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 5.8e-38 162.9 173 52.6
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 8.3e-37 159.1 122 64.8
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 7.8e-35 152.5 270 34.8
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 2.3e-34 151.0 224 42.0
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 5.8e-30 136.3 239 35.1
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 1.3e-26 125.2 115 55.7
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.8e-24 117.5 146 49.3
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 3.1e-23 114.0 170 38.8
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 5.2e-23 113.2 123 45.5
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 8.9e-23 112.5 148 45.9
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.1e-17 95.5 144 43.8
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 3.0e-10 70.9 71 47.9
SEGI_13457 Sequoiadendron giganteum HOM05D035915 ORTHO05D004606 2.0e-06 58.2 91 37.4
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 3.4e-06 57.4 94 39.4
Medtr2g098740 Medicago truncatula HOM05D004076 ORTHO05D004606 4.5e-06 57.0 60 50.0
Medtr2g098780 Medicago truncatula HOM05D004076 ORTHO05D004606 9.9e-06 55.8 62 48.4


User provided reference genes

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