Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20757_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 4.9e-120 434.5 220 100.0
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 5.4e-103 377.9 210 91.9
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 1.2e-102 376.7 210 92.4
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 2.0e-97 359.4 213 86.9
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 1.7e-96 356.3 211 88.6
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 1.4e-95 353.2 213 86.4
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 1.4e-95 353.2 213 86.4
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 4.2e-95 351.7 213 85.9
VMungo0464G1145 Vigna mungo HOM05D003495 ORTHO05D004159 1.6e-94 349.7 213 85.0
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 1.5e-92 343.2 216 82.9
QL02p063585 Quercus lobata HOM05D003495 ORTHO05D004159 5.5e-87 324.7 212 78.8
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 2.1e-86 322.8 213 78.4
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 2.3e-85 319.3 213 77.5
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 3.9e-85 318.5 213 77.5
CiPaw.03G081100 Carya illinoinensis HOM05D003495 ORTHO05D004159 6.7e-85 317.8 214 77.1
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 6.7e-85 317.8 213 77.0
Dinv34893 Davidia involucrata HOM05D003495 ORTHO05D004159 1.1e-84 317.0 214 77.1
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 1.1e-84 317.0 214 77.1
RcHm_v2.0_Chr2g0117951 Rosa chinensis HOM05D003495 ORTHO05D004159 1.9e-84 316.2 213 76.5
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 3.3e-84 315.5 214 76.6
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 5.6e-84 314.7 214 77.6
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 9.6e-84 313.9 216 77.3
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 1.3e-83 313.5 212 76.9
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 1.6e-83 313.2 213 75.1
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 2.8e-83 312.4 215 75.3
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 2.8e-83 312.4 214 75.7
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 6.2e-83 311.2 214 77.1
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 1.8e-82 309.7 213 76.1
Gohir.D02G161820 Gossypium hirsutum HOM05D003495 ORTHO05D004159 2.4e-82 309.3 214 75.7
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 2.4e-82 309.3 214 75.7
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 3.1e-82 308.9 212 76.4
COL.COLO4_24186 Corchorus olitorius HOM05D003495 ORTHO05D004159 6.9e-82 307.8 214 73.8
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 6.9e-82 307.8 208 76.4
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 6.9e-82 307.8 214 75.2
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 9.0e-82 307.4 214 75.2
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 9.0e-82 307.4 212 75.9
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 1.2e-81 307.0 213 75.1
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 2.6e-81 305.8 217 73.7
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 3.4e-81 305.4 214 73.8
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 4.5e-81 305.1 214 76.2
DCAR_011000 Daucus carota HOM05D003495 ORTHO05D004159 4.5e-81 305.1 212 74.1
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 5.8e-81 304.7 211 75.4
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 5.8e-81 304.7 208 76.0
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 7.6e-81 304.3 212 74.5
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 1.3e-80 303.5 212 74.5
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 1.3e-80 303.5 215 74.9
vmacro05603 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 1.3e-80 303.5 214 72.9
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 1.7e-80 303.1 213 73.2
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 2.2e-80 302.8 213 74.2
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 2.9e-80 302.4 212 73.6
Migut.K00878 Erythranthe guttata HOM05D003495 ORTHO05D004159 2.9e-80 302.4 214 72.4
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 2.9e-80 302.4 208 75.0
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 2.9e-80 302.4 208 75.0
FAN14G3604 Fragaria x ananassa HOM05D003495 ORTHO05D004159 2.9e-80 302.4 208 75.0
Lj4C126G12 Lonicera japonica HOM05D003495 ORTHO05D004159 3.8e-80 302.0 210 76.2
HanXRQChr15g0464911 Helianthus annuus HOM05D003495 ORTHO05D004159 1.1e-79 300.4 214 72.0
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 1.9e-79 299.7 208 75.0
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 2.5e-79 299.3 212 74.1
Haze_14358 Corylus avellana HOM05D003495 ORTHO05D004159 5.5e-79 298.1 213 73.2
ECA232G2419 Erigeron canadensis HOM05D003495 ORTHO05D004159 9.3e-79 297.4 214 70.6
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 1.2e-78 297.0 213 72.8
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 1.6e-78 296.6 214 73.4
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 2.7e-78 295.8 211 72.0
Lsat_1_v5_gn_4_173921 Lactuca sativa HOM05D003495 ORTHO05D004159 2.7e-78 295.8 215 71.2
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 3.5e-78 295.4 212 73.1
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 6.0e-78 294.7 163 92.6
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 2.3e-77 292.7 212 72.2
HanXRQChr15g0489851 Helianthus annuus HOM05D003495 ORTHO05D004159 3.0e-77 292.4 212 71.2
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 3.9e-77 292.0 214 71.0
Oeu032840.1 Olea europaea HOM05D003495 ORTHO05D004159 3.9e-77 292.0 214 71.0
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 5.1e-77 291.6 217 72.4
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 1.1e-76 290.4 212 71.7
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 1.5e-76 290.0 214 71.5
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 1.5e-76 290.0 213 70.9
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 1.9e-76 289.7 203 74.4
Nitab4.5_0001397g0040 Nicotiana tabacum HOM05D003495 ORTHO05D004159 2.5e-76 289.3 212 71.7
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 2.5e-76 289.3 214 69.6
Nitab4.5_0000154g0090 Nicotiana tabacum HOM05D003495 ORTHO05D004159 3.3e-76 288.9 212 71.7
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 1.6e-75 286.6 214 69.6
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 2.1e-75 286.2 237 65.8
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 2.1e-75 286.2 212 70.3
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 3.7e-75 285.4 214 68.2
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 4.8e-75 285.0 211 70.1
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 1.8e-74 283.1 214 67.8
Gohir.D01G134500 Gossypium hirsutum HOM05D003495 ORTHO05D004159 2.4e-74 282.7 211 69.7
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 4.1e-74 282.0 207 69.1
Gohir.A01G142600 Gossypium hirsutum HOM05D003495 ORTHO05D004159 4.1e-74 282.0 209 68.9
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 9.0e-74 280.8 211 69.7
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 1.5e-73 280.0 211 67.8
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 2.6e-73 279.3 212 68.4
Dinv33880 Davidia involucrata HOM05D003495 ORTHO05D004159 2.5e-71 272.7 161 83.9
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 4.2e-71 271.9 215 67.9
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 1.6e-70 270.0 212 67.9
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 1.6e-70 270.0 212 67.9
A02p03170 Brassica napus HOM05D003495 ORTHO05D004159 2.7e-70 269.2 212 67.9
BraA02t05287Z Brassica rapa HOM05D003495 ORTHO05D004159 2.7e-70 269.2 212 67.9
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 2.7e-70 269.2 215 67.0
C02p07920 Brassica napus HOM05D003495 ORTHO05D004159 4.6e-70 268.5 212 67.9
BolC2t06715H Brassica oleracea HOM05D003495 ORTHO05D004159 4.6e-70 268.5 212 67.9
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 6.1e-70 268.1 215 67.0
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 1.0e-69 267.3 212 67.5
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 5.1e-69 265.0 215 66.0
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 6.7e-69 264.6 215 66.0
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 8.7e-69 264.2 215 65.6
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 1.9e-68 263.1 216 65.7
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 1.9e-68 263.1 214 67.3
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 3.3e-68 262.3 218 65.1
unitig_748.g7269 Utricularia gibba HOM05D003495 ORTHO05D004159 5.7e-68 261.5 213 66.2
BraA03t10052Z Brassica rapa HOM05D003495 ORTHO05D004159 1.6e-67 260.0 211 64.9
C03p08360 Brassica napus HOM05D003495 ORTHO05D004159 4.8e-67 258.5 212 65.1
BolC3t13343H Brassica oleracea HOM05D003495 ORTHO05D004159 4.8e-67 258.5 212 65.1
A03p07290 Brassica napus HOM05D003495 ORTHO05D004159 6.9e-66 254.6 212 64.2
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 2.2e-64 249.6 214 63.1
SEGI_22880 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 8.5e-64 247.7 211 64.5
HPP92_025565 Vanilla planifolia HOM05D003495 ORTHO05D004159 1.4e-63 246.9 209 61.7
CDE04G3053 Ceratophyllum demersum HOM05D003495 ORTHO05D004159 3.2e-63 245.7 213 60.1
Os02g0830900 Oryza sativa ssp. japonica HOM05D003495 ORTHO05D004159 1.5e-60 236.9 213 58.7
Hund20735 Selenicereus undatus HOM05D003495 ORTHO05D004159 1.3e-59 233.8 213 57.3
Psat6g133600 Pisum sativum HOM05D003495 ORTHO05D004159 1.7e-59 233.4 139 89.2
Zm00001eb190620 Zea mays HOM05D003495 ORTHO05D004159 1.8e-58 229.9 216 56.9
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 4.1e-58 228.8 211 59.7
AagrBONN_evm.TU.Sc2ySwM_228.311 Anthoceros agrestis HOM05D003495 ORTHO05D004159 1.4e-53 213.8 224 54.5
SHI33626 Sapria himalayana HOM05D003495 ORTHO05D004159 2.3e-53 213.0 209 56.0
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 1.7e-51 206.8 215 54.9
ECA238G4655 Erigeron canadensis HOM05D003495 ORTHO05D004159 4.1e-50 202.2 208 56.2
SEGI_11817 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 2.6e-49 199.5 199 59.8
Solyc02g089390.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 2.6e-49 199.5 153 69.3
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 4.5e-49 198.7 229 51.1
HanXRQChr14g0447961 Helianthus annuus HOM05D003495 ORTHO05D004159 1.1e-47 194.1 207 51.2
CAN.G497.68 Capsicum annuum HOM05D003495 ORTHO05D015025 3.7e-43 179.1 147 66.0
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 2.2e-40 169.9 228 44.7
Pp3c3_1860 Physcomitrium patens HOM05D003495 ORTHO05D004159 2.2e-40 169.9 228 45.2
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 4.2e-39 165.6 218 44.0
Lsat_1_v5_gn_2_85980 Lactuca sativa HOM05D003495 ORTHO05D004159 1.5e-36 157.1 209 45.5
CAN.G497.66 Capsicum annuum HOM05D003495 ORTHO05D004159 1.2e-33 147.5 150 58.7
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 7.3e-23 111.7 228 33.8
CAN.G497.63 Capsicum annuum HOM05D003495 ORTHO05D004159 7.5e-20 101.7 105 59.0
Actinidia36279 Actinidia chinensis HOM05D003495 ORTHO05D004159 1.7e-11 73.9 64 62.5
BcaB08g36895 Brassica carinata HOM05D003495 ORTHO05D004159 1.0e-08 64.7 37 86.5


User provided reference genes

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