Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 0.0e+00 1254.6 741 100.0
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 2.9e-217 759.2 915 59.0
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 8.0e-207 724.5 929 52.9
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 1.1e-205 720.7 923 57.3
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 2.7e-186 656.4 881 57.3
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 1.7e-164 583.9 833 57.5
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 4.9e-164 582.4 928 51.8
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.6e-159 567.4 906 51.9
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 3.2e-155 553.1 950 47.9
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 1.7e-148 530.8 933 50.3
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 6.4e-148 528.9 893 50.8
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 6.6e-145 518.8 933 49.7
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 6.2e-143 512.3 947 48.2
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 7.9e-122 442.2 1014 40.7
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 7.0e-94 349.4 913 41.4
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 1.1e-91 342.0 893 41.4
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 9.4e-91 339.0 899 41.4
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 6.7e-89 332.8 903 39.6
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 1.5e-88 331.6 868 39.6
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.3e-87 328.6 918 39.9
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 4.5e-85 320.1 912 38.7
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 3.2e-83 313.9 950 36.7
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 1.2e-82 312.0 873 40.3
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 3.7e-79 300.4 893 37.3
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 4.8e-79 300.1 977 40.3
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 4.8e-79 300.1 864 39.1
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 8.3e-79 299.3 902 37.0
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 1.4e-78 298.5 877 39.8
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 5.5e-75 286.6 768 37.4
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.2e-74 285.4 932 35.7
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 2.1e-74 284.6 808 36.0
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 3.6e-74 283.9 892 38.6
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.0e-73 282.3 207 74.4
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 1.0e-73 282.3 209 72.7
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 1.0e-73 282.3 209 72.7
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 1.0e-73 282.3 209 72.7
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 5.7e-72 276.6 210 70.5
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 9.8e-72 275.8 873 38.8
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.7e-71 275.0 885 38.3
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 3.7e-71 273.9 876 38.1
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 3.7e-71 273.9 887 40.6
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 1.6e-69 268.5 893 38.1
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 7.8e-69 266.2 875 37.8
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 2.9e-68 264.2 209 67.5
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 5.0e-68 263.5 844 34.8
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 5.0e-68 263.5 210 66.2
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 6.6e-68 263.1 209 67.0
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 8.6e-68 262.7 890 37.8
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 2.5e-67 261.2 271 56.5
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 4.3e-67 260.4 889 35.8
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 4.3e-67 260.4 974 37.6
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 7.3e-67 259.6 887 39.9
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 9.5e-67 259.2 172 77.9
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.6e-66 258.5 205 66.8
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.6e-66 258.5 207 65.2
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 2.8e-66 257.7 928 35.9
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 3.6e-66 257.3 903 36.4
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 5.2e-65 253.4 329 48.3
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.5e-64 251.9 893 38.7
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 4.4e-64 250.4 208 64.4
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 9.8e-64 249.2 207 63.3
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 3.7e-63 247.3 212 64.6
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 3.7e-63 247.3 200 66.0
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 1.4e-62 245.4 229 62.0
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.4e-62 245.4 957 33.9
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 1.8e-62 245.0 207 62.3
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.8e-62 245.0 893 34.7
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 7.0e-62 243.0 206 64.6
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 1.6e-61 241.9 210 61.9
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 1.6e-61 241.9 207 62.8
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 2.7e-61 241.1 927 36.7
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.5e-61 240.7 889 35.0
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 3.5e-61 240.7 936 35.1
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 5.9e-61 240.0 202 66.3
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 1.3e-60 238.8 161 75.8
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.7e-60 238.4 147 81.0
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 2.3e-60 238.0 213 62.0
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 6.6e-60 236.5 214 62.6
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 8.6e-60 236.1 210 63.8
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.5e-59 235.3 935 35.1
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 5.6e-59 233.4 908 35.1
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 1.2e-58 232.3 814 32.2
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 4.7e-58 230.3 918 33.2
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 1.1e-57 229.2 209 59.8
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.5e-56 225.3 135 82.2
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 1.5e-56 225.3 140 79.3
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 4.4e-56 223.8 923 34.2
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 1.3e-55 222.2 134 80.6
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.3e-55 222.2 202 60.4
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 6.4e-55 219.9 251 51.0
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 8.3e-55 219.5 212 60.4
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 8.3e-55 219.5 211 58.8
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 1.4e-54 218.8 220 58.2
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 3.2e-54 217.6 919 33.2
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.2e-54 217.6 189 61.4
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.2e-54 217.6 189 61.4
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 1.6e-53 215.3 213 58.2
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 3.5e-53 214.2 906 32.6
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 4.6e-53 213.8 217 58.5
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 6.0e-53 213.4 211 58.3
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 1.3e-52 212.2 209 58.9
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 3.0e-52 211.1 938 32.9
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 7.3e-51 206.5 921 32.0
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 2.1e-50 204.9 282 50.0
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 2.8e-50 204.5 173 61.8
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 4.7e-50 203.8 129 76.0
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 1.8e-49 201.8 933 33.5
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.0e-48 198.4 113 85.8
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 2.0e-48 198.4 222 52.3
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 5.8e-48 196.8 134 72.4
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 5.4e-46 190.3 166 62.0
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 5.1e-44 183.7 908 33.0
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 3.3e-43 181.0 858 31.1
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 4.3e-43 180.6 854 33.6
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 1.8e-41 175.3 161 56.5
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 2.4e-38 164.9 190 51.1
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 2.4e-33 148.3 742 32.7
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 6.9e-33 146.7 124 60.5
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 1.9e-30 138.7 134 59.7
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 1.1e-27 129.4 182 45.1
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 1.6e-26 125.6 127 53.5
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 9.3e-22 109.8 156 42.9
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 8.7e-20 103.2 144 41.7
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 1.9e-19 102.1 126 50.8
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 2.1e-18 98.6 83 66.3
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 2.4e-14 85.1 57 73.7
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 6.7e-12 77.0 407 37.3
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 6.2e-10 70.5 50 72.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 8.4e-07 60.1 121 33.1


User provided reference genes

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