Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 5.7e-98 360.9 183 100.0
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 1.7e-89 332.8 183 89.6
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.1e-88 330.1 182 89.6
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 1.3e-86 323.2 183 86.9
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 2.2e-81 305.8 184 81.5
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 3.5e-71 271.9 181 74.6
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 3.5e-71 271.9 181 75.1
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 2.3e-70 269.2 181 72.9
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 3.9e-70 268.5 181 72.9
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 1.1e-69 266.9 181 73.5
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 1.1e-69 266.9 180 73.9
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.6e-68 263.1 151 82.1
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 2.1e-68 262.7 155 80.6
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 2.8e-68 262.3 155 80.0
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 6.2e-68 261.2 155 80.0
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.3e-67 259.2 149 82.6
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 3.1e-67 258.8 149 82.6
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 4.0e-67 258.5 149 81.2
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 6.8e-67 257.7 154 79.9
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 8.9e-67 257.3 155 78.1
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 8.9e-67 257.3 149 81.2
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.2e-66 256.9 151 80.8
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.2e-66 256.9 183 72.7
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.2e-66 256.9 152 80.3
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.5e-66 256.5 149 81.2
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.5e-66 256.5 149 81.2
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 1.5e-66 256.5 158 76.6
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 2.0e-66 256.1 153 79.7
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 2.0e-66 256.1 152 79.6
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.6e-66 255.8 151 80.1
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 3.4e-66 255.4 161 77.0
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 4.4e-66 255.0 149 80.5
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 4.4e-66 255.0 153 78.4
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 4.4e-66 255.0 152 80.3
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 5.8e-66 254.6 157 78.3
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 5.8e-66 254.6 175 73.7
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 7.5e-66 254.2 155 78.7
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 7.5e-66 254.2 151 81.5
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 9.8e-66 253.8 149 79.9
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.3e-65 253.4 152 78.9
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.3e-65 253.4 154 78.6
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.3e-65 253.4 153 78.4
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 1.3e-65 253.4 149 80.5
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 1.7e-65 253.1 153 78.4
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.7e-65 253.1 152 78.9
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.7e-65 253.1 157 77.7
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 2.2e-65 252.7 181 71.8
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.2e-65 252.7 172 74.4
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 2.2e-65 252.7 169 73.4
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.9e-65 252.3 157 77.7
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 2.9e-65 252.3 157 77.1
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 2.9e-65 252.3 183 71.6
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 3.7e-65 251.9 152 78.3
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 3.7e-65 251.9 157 77.7
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 4.9e-65 251.5 181 69.6
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 4.9e-65 251.5 152 78.3
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 8.3e-65 250.8 169 71.0
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 8.3e-65 250.8 151 79.5
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.1e-64 250.4 157 76.4
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 1.1e-64 250.4 152 77.6
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.1e-64 250.4 152 78.3
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.1e-64 250.4 183 70.5
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 1.4e-64 250.0 161 73.9
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 1.9e-64 249.6 151 78.1
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.9e-64 249.6 149 79.9
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.9e-64 249.6 183 71.0
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 2.4e-64 249.2 152 77.0
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 2.4e-64 249.2 152 77.6
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 2.4e-64 249.2 152 77.0
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 3.2e-64 248.8 152 77.0
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 3.2e-64 248.8 157 75.8
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 3.2e-64 248.8 152 78.9
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 4.1e-64 248.4 152 77.0
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 4.1e-64 248.4 154 76.6
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 4.1e-64 248.4 152 77.0
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 4.1e-64 248.4 175 70.3
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.0e-64 247.7 148 79.7
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.0e-64 247.7 148 79.7
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 7.0e-64 247.7 157 76.4
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 7.0e-64 247.7 157 76.4
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 9.2e-64 247.3 157 75.8
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 9.2e-64 247.3 173 71.1
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 9.2e-64 247.3 166 72.9
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.2e-63 246.9 149 78.5
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 1.2e-63 246.9 152 77.0
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 1.2e-63 246.9 152 77.0
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.2e-63 246.9 158 74.1
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.6e-63 246.5 182 69.2
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 2.0e-63 246.1 178 72.5
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 2.0e-63 246.1 158 74.1
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.0e-63 246.1 158 74.1
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.0e-63 246.1 158 74.1
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 2.0e-63 246.1 173 71.1
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 2.0e-63 246.1 183 68.3
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 2.7e-63 245.7 149 77.9
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.7e-63 245.7 158 73.4
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.7e-63 245.7 158 73.4
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.7e-63 245.7 176 70.5
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 3.5e-63 245.4 152 76.3
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 3.5e-63 245.4 170 70.0
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 7.8e-63 244.2 158 73.4
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 7.8e-63 244.2 158 73.4
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 7.8e-63 244.2 158 71.5
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 7.8e-63 244.2 159 74.8
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.3e-62 243.4 149 77.9
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.7e-62 243.0 160 74.4
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 3.0e-62 242.3 170 71.2
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 3.9e-62 241.9 151 75.5
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 3.9e-62 241.9 146 80.1
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 5.0e-62 241.5 183 69.4
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 6.6e-62 241.1 157 73.9
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.6e-62 241.1 161 73.9
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 6.6e-62 241.1 180 68.9
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 6.6e-62 241.1 180 68.9
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 3.3e-61 238.8 202 63.9
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 3.3e-61 238.8 153 76.5
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 7.3e-61 237.7 157 72.0
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 9.5e-61 237.3 153 76.5
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 1.2e-60 236.9 163 71.2
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.6e-60 236.5 181 66.9
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 2.1e-60 236.1 183 69.9
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 2.8e-60 235.7 183 69.9
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 4.7e-60 235.0 152 74.3
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 4.7e-60 235.0 152 74.3
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 8.1e-60 234.2 156 69.2
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 8.1e-60 234.2 156 69.2
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 8.1e-60 234.2 183 68.9
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 1.1e-59 233.8 164 70.1
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.1e-59 233.8 183 68.9
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.4e-59 233.4 164 68.3
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.8e-59 233.0 171 64.9
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 1.8e-59 233.0 183 68.9
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 8.9e-59 230.7 153 72.5
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 1.5e-58 229.9 140 75.7
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 2.0e-58 229.6 183 67.8
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.7e-57 226.5 140 75.0
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 4.9e-57 224.9 231 53.7
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.4e-51 206.1 173 61.3
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 3.1e-51 205.7 132 73.5
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 8.4e-49 197.6 142 64.1
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 2.7e-47 192.6 152 62.5
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 7.8e-47 191.0 127 72.4
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 5.1e-46 188.3 116 76.7
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 8.1e-44 181.0 134 64.2
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 1.4e-43 180.3 134 62.7
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 3.4e-42 175.6 133 58.6
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 7.6e-42 174.5 108 81.5
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 7.6e-42 174.5 130 66.2
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 3.2e-40 169.1 134 58.2
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.6e-39 165.2 155 57.4
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 8.7e-38 161.0 109 70.6
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 3.6e-36 155.6 91 80.2
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 7.6e-34 147.9 120 56.7
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.4e-32 143.7 193 44.0
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 9.3e-32 141.0 88 77.3
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 1.6e-31 140.2 98 72.4
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 4.6e-31 138.7 86 79.1
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.8e-30 136.7 152 51.3
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 5.8e-26 121.7 99 59.6
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.1e-24 117.5 105 61.9
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.9e-21 106.7 136 40.4
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.5e-21 106.3 71 73.2
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.7e-20 102.4 167 38.3
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 6.9e-19 98.2 55 76.4
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 9.0e-19 97.8 111 44.1
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 9.0e-19 97.8 111 44.1
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.2e-18 97.4 146 38.4
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.2e-18 97.4 146 38.4
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 6.5e-17 91.7 157 40.8
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 2.1e-15 86.7 50 74.0
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.0e-14 82.8 52 75.0
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 4.3e-13 79.0 95 37.9
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.7e-12 75.9 47 66.0
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 4.5e-10 68.9 62 50.0
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.0e-09 67.8 95 37.9
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 3.8e-09 65.9 59 52.5
PRCOL_00006691 Prasinoderma coloniale HOM05D004003 ORTHO05D004595 6.7e-06 55.1 97 37.1


User provided reference genes

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