Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 2.6e-139 498.8 274 100.0
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 2.6e-139 498.8 274 100.0
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 3.1e-108 395.6 273 75.1
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 2.2e-101 372.9 248 76.2
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 1.6e-91 340.1 247 70.0
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 4.5e-91 338.6 256 73.4
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 1.0e-90 337.4 249 72.3
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 3.8e-90 335.5 247 70.4
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 1.1e-89 334.0 248 71.0
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 3.3e-89 332.4 247 70.4
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 1.8e-87 326.6 248 69.0
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 2.0e-86 323.2 247 70.4
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 1.6e-83 313.5 252 66.7
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 4.6e-83 312.0 248 67.7
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 1.0e-82 310.8 249 65.9
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 1.1e-81 307.4 252 67.1
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 1.5e-81 307.0 254 64.2
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 1.5e-81 307.0 250 66.8
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 3.3e-81 305.8 247 67.2
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 4.3e-81 305.4 250 67.2
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 5.6e-81 305.1 249 65.9
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 7.3e-81 304.7 254 63.8
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 7.3e-81 304.7 250 66.8
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 7.3e-81 304.7 253 66.0
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 1.6e-80 303.5 248 66.9
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 2.1e-80 303.1 245 67.3
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 2.1e-80 303.1 247 64.4
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.8e-80 302.8 251 66.5
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 4.7e-80 302.0 245 68.2
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 4.7e-80 302.0 245 68.2
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 6.2e-80 301.6 245 67.3
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.1e-79 300.8 251 65.7
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 1.4e-79 300.4 249 65.9
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 3.1e-79 299.3 243 67.5
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 4.0e-79 298.9 250 65.2
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 4.0e-79 298.9 249 64.3
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 2.0e-78 296.6 251 64.9
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 2.6e-78 296.2 248 65.3
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 2.6e-78 296.2 251 64.9
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 5.8e-78 295.0 250 65.2
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 7.5e-78 294.7 251 66.1
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 9.8e-78 294.3 246 65.4
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 4.9e-77 292.0 250 64.4
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 1.4e-76 290.4 220 67.3
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 1.9e-76 290.0 245 63.7
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 2.4e-76 289.7 250 65.6
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 7.0e-76 288.1 247 61.9
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 1.2e-75 287.3 255 62.0
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 3.5e-75 285.8 195 73.3
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 1.0e-74 284.3 247 61.1
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 1.0e-74 284.3 238 62.6
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 1.7e-74 283.5 247 60.7
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 1.7e-74 283.5 195 72.3
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 2.3e-74 283.1 238 62.6
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 2.3e-74 283.1 238 62.6
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 2.3e-74 283.1 189 75.1
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 3.0e-74 282.7 195 71.8
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 3.0e-74 282.7 251 64.9
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 3.9e-74 282.3 251 64.9
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 6.6e-74 281.6 202 71.8
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 6.6e-74 281.6 247 61.9
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 1.5e-73 280.4 237 62.4
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 2.5e-73 279.6 248 60.5
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 5.6e-73 278.5 256 59.8
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 7.3e-73 278.1 188 75.0
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 7.3e-73 278.1 254 61.8
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 1.2e-72 277.3 242 60.7
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 1.6e-72 276.9 235 62.1
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 1.6e-72 276.9 235 62.1
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 6.2e-72 275.0 258 60.1
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 1.1e-71 274.2 209 69.9
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.1e-71 274.2 244 59.4
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 1.1e-71 274.2 234 64.5
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 1.4e-71 273.9 192 70.3
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 1.5e-70 270.4 246 62.6
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 4.9e-69 265.4 230 60.4
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 2.4e-68 263.1 187 65.8
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 3.2e-68 262.7 246 57.3
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 1.2e-67 260.8 168 75.0
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 1.6e-67 260.4 242 59.9
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 4.6e-67 258.8 187 65.2
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 2.3e-66 256.5 220 62.7
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 3.3e-65 252.7 191 66.5
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 9.5e-65 251.1 257 55.6
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 1.2e-64 250.8 253 54.9
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 2.8e-64 249.6 242 58.7
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 6.2e-64 248.4 259 54.1
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 1.8e-63 246.9 256 52.7
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 2.4e-63 246.5 264 54.9
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 3.1e-63 246.1 247 54.7
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 4.0e-63 245.7 255 55.3
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 2.0e-62 243.4 226 58.4
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 2.6e-62 243.0 257 52.1
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 3.4e-62 242.7 257 52.1
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 4.4e-62 242.3 247 53.8
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 5.8e-62 241.9 210 61.4
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 5.8e-62 241.9 213 60.6
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 2.9e-61 239.6 257 52.5
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 3.8e-61 239.2 239 56.9
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 4.9e-61 238.8 249 55.8
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 6.4e-61 238.4 212 59.9
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 5.4e-60 235.3 199 64.8
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 4.6e-59 232.3 164 67.1
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 4.6e-59 232.3 170 64.7
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 4.6e-59 232.3 189 62.4
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 1.5e-57 227.3 149 75.8
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.9e-52 210.3 139 77.0
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 4.6e-51 205.7 174 59.2
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 2.3e-50 203.4 174 59.8
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 1.1e-47 194.5 256 48.4
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 8.4e-45 184.9 188 54.3
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.9e-28 130.6 98 66.3
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 9.7e-25 118.2 95 64.2
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 6.3e-24 115.5 133 50.4
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 3.7e-16 89.7 71 56.3
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-15 87.0 149 40.3
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-14 84.7 130 33.8
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.1e-12 78.2 71 50.7
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 6.7e-10 68.9 42 76.2
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 7.4e-09 65.5 103 46.6


User provided reference genes

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