Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 2.7e-127 458.8 245 100.0
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 7.1e-120 434.1 245 94.3
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 2.7e-111 405.6 245 89.0
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.3e-110 403.3 245 88.6
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 5.1e-110 401.4 248 86.7
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.9e-109 399.4 248 86.7
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 1.9e-109 399.4 248 86.3
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 3.3e-109 398.7 248 86.3
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 5.6e-109 397.9 246 89.0
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 6.9e-107 391.0 248 84.7
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.2e-106 390.2 245 87.8
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 1.5e-106 389.8 248 83.1
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.7e-105 386.3 248 83.9
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.7e-105 386.3 248 83.1
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.7e-105 386.3 248 83.1
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.7e-105 386.3 248 83.1
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 2.9e-105 385.6 248 82.7
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 4.9e-105 384.8 248 82.7
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 4.9e-105 384.8 245 86.1
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.5e-105 384.4 248 82.7
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 6.5e-105 384.4 248 82.7
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 8.4e-105 384.0 248 81.5
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.1e-104 383.6 248 81.5
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.1e-104 383.6 248 82.7
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.9e-104 382.9 248 81.9
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 1.9e-104 382.9 248 82.3
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.9e-104 382.9 248 82.3
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 3.2e-104 382.1 248 82.3
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 3.2e-104 382.1 248 80.6
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 3.2e-104 382.1 248 81.9
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 3.2e-104 382.1 248 81.5
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 3.2e-104 382.1 248 80.6
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 4.2e-104 381.7 248 81.9
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 4.2e-104 381.7 248 81.5
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 9.3e-104 380.6 248 81.5
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.6e-103 379.8 248 82.3
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.6e-103 379.8 248 80.6
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.7e-103 379.0 248 81.5
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 2.7e-103 379.0 248 79.8
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.5e-103 378.6 248 82.7
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 6.0e-103 377.9 248 81.0
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 6.0e-103 377.9 248 81.9
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 6.0e-103 377.9 248 81.9
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.0e-102 377.1 248 80.6
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.3e-102 376.7 248 79.8
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.3e-102 376.7 248 81.5
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 2.3e-102 375.9 248 81.0
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 2.3e-102 375.9 248 79.8
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.0e-102 375.6 248 81.0
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 3.0e-102 375.6 248 81.0
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 3.0e-102 375.6 248 81.5
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 3.9e-102 375.2 227 89.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.9e-102 375.2 248 80.6
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 3.9e-102 375.2 248 81.9
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 3.9e-102 375.2 248 81.9
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 3.9e-102 375.2 248 79.0
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 6.7e-102 374.4 248 81.0
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 8.7e-102 374.0 248 81.0
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 8.7e-102 374.0 248 82.3
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 1.1e-101 373.6 247 81.0
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 1.1e-101 373.6 248 81.9
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.9e-101 372.9 248 80.6
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.9e-101 372.9 248 80.6
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.9e-101 372.9 248 81.5
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.9e-101 372.9 248 81.0
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 2.5e-101 372.5 248 78.2
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 7.4e-101 370.9 248 79.4
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 7.4e-101 370.9 247 78.5
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 9.6e-101 370.5 248 79.0
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 9.6e-101 370.5 248 80.2
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 9.6e-101 370.5 248 80.2
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 9.6e-101 370.5 224 92.0
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.3e-100 370.2 248 80.2
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 1.3e-100 370.2 248 80.2
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.3e-100 370.2 248 78.6
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.3e-100 370.2 248 81.0
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.6e-100 369.8 248 79.8
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 2.8e-100 369.0 248 80.6
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.8e-100 369.0 248 77.4
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.7e-100 368.6 248 79.8
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.7e-100 368.6 248 78.6
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 6.3e-100 367.9 248 78.2
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 8.2e-100 367.5 248 77.4
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.2e-100 367.5 248 77.0
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.1e-99 367.1 248 78.2
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.4e-99 366.7 248 77.8
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.8e-99 366.3 248 77.4
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 2.4e-99 365.9 248 77.4
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.4e-99 365.9 248 79.8
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.4e-99 365.9 248 77.8
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 5.3e-99 364.8 238 80.7
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 5.3e-99 364.8 248 77.8
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.2e-98 363.6 248 78.6
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.5e-98 363.2 248 78.6
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 2.0e-98 362.8 248 78.6
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 3.4e-98 362.1 248 77.8
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 3.4e-98 362.1 248 77.4
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 5.9e-98 361.3 248 79.0
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 5.9e-98 361.3 249 76.7
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.7e-97 359.8 248 76.6
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 5.0e-97 358.2 249 77.5
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 8.5e-97 357.5 248 79.0
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.9e-96 356.3 248 78.6
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 7.2e-96 354.4 201 94.5
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 7.2e-96 354.4 250 76.4
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 9.3e-96 354.0 245 78.4
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 2.1e-95 352.8 248 77.4
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.0e-94 350.5 248 75.4
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.0e-94 350.5 248 75.4
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.0e-94 350.5 248 75.8
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 1.8e-94 349.7 248 75.4
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 3.0e-94 349.0 248 75.4
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 3.0e-94 349.0 248 75.4
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 3.0e-94 349.0 248 75.4
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 5.1e-94 348.2 248 75.0
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 5.1e-94 348.2 248 75.0
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 5.1e-94 348.2 248 75.0
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 5.1e-94 348.2 248 75.0
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 5.1e-94 348.2 248 75.0
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 6.7e-94 347.8 248 75.0
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.1e-93 347.1 248 75.0
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.5e-93 346.7 248 74.6
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 1.5e-93 346.7 248 74.6
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 1.5e-93 346.7 248 74.6
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.5e-93 346.7 246 77.6
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 1.9e-93 346.3 248 74.6
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 1.9e-93 346.3 246 77.2
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 1.9e-93 346.3 225 82.7
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 7.4e-93 344.4 249 74.7
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 7.4e-93 344.4 249 74.7
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 7.4e-93 344.4 249 74.7
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 2.8e-92 342.4 255 73.7
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 3.7e-92 342.0 255 73.7
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.0e-89 334.0 249 71.1
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 5.0e-89 331.6 203 85.7
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 5.7e-85 318.2 248 71.8
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.7e-84 316.6 195 84.1
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 4.8e-84 315.1 212 75.5
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.4e-83 313.5 245 66.5
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.8e-83 313.2 248 69.8
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 5.9e-82 308.1 203 82.8
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.0e-81 307.4 208 74.5
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.4e-80 303.5 211 75.4
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.7e-79 299.3 245 65.7
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 3.6e-79 298.9 205 72.7
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.9e-72 276.6 248 64.9
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.2e-69 267.3 248 63.3
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.2e-69 267.3 213 64.8
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.2e-69 267.3 236 57.2
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 5.7e-69 265.0 251 59.0
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.7e-65 253.4 194 66.5
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.2e-63 247.3 236 61.9
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 1.6e-63 246.9 236 59.3
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 1.8e-62 243.4 249 58.2
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 9.8e-61 237.7 255 54.9
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 9.1e-59 231.1 200 61.5
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.3e-57 226.5 247 57.5
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 2.0e-53 213.4 245 50.2
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.7e-52 210.3 236 56.4
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.6e-50 203.8 246 50.4
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 4.7e-47 192.2 138 74.6
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 8.3e-44 181.4 116 81.0
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 6.6e-41 171.8 103 86.4
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.3e-40 169.5 118 76.3
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 2.9e-36 156.4 165 57.0
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.6e-31 140.6 192 46.9
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 7.8e-26 121.7 113 62.8
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.7e-25 120.6 69 91.3
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 6.6e-25 118.6 96 63.5


User provided reference genes

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