Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20429_v3 Cicer arietinum L. HOM05D007753 ORTHO05D009385 6.4e-237 823.5 378 100.0
Medtr4g011090 Medicago truncatula HOM05D007753 ORTHO05D009385 9.4e-196 686.8 379 82.6
TPR.G38673 Trifolium pratense HOM05D007753 ORTHO05D009385 4.2e-188 661.4 379 81.5
Psat7g000960 Pisum sativum HOM05D007753 ORTHO05D009385 5.2e-186 654.4 382 80.4
Lj3g0017927 Lotus japonicus HOM05D007753 ORTHO05D009385 1.6e-150 536.6 378 66.9
Glyma.08G210700 Glycine max HOM05D007753 ORTHO05D009385 4.6e-142 508.4 386 63.5
Glyma.07G032000 Glycine max HOM05D007753 ORTHO05D009385 6.6e-141 504.6 385 63.1
arahy.Tifrunner.gnm1.ann1.M43JJC Arachis hypogaea HOM05D007753 ORTHO05D009385 1.6e-134 483.4 390 61.3
arahy.Tifrunner.gnm1.ann1.PVCU19 Arachis hypogaea HOM05D007753 ORTHO05D009385 6.0e-134 481.5 390 60.8
VMungo0331G0527 Vigna mungo HOM05D007753 ORTHO05D009385 1.8e-130 469.9 378 60.6
Phvul.010G154000 Phaseolus vulgaris HOM05D007753 ORTHO05D009385 1.4e-127 460.3 385 58.2
Lalb_Chr04g0262461 Lupinus albus HOM05D007753 ORTHO05D009385 5.3e-122 441.8 375 57.3
Thecc.06G071000 Theobroma cacao HOM05D007753 ORTHO05D009385 3.4e-121 439.1 363 57.0
CiPaw.01G244900 Carya illinoinensis HOM05D007753 ORTHO05D009385 6.4e-120 434.9 380 55.8
COL.COLO4_12908 Corchorus olitorius HOM05D007753 ORTHO05D009385 1.1e-119 434.1 375 55.2
vmacro18967 Vaccinium macrocarpon HOM05D007753 ORTHO05D009385 2.7e-118 429.5 376 54.5
Atru.chr1.3069 Acer truncatum HOM05D007753 ORTHO05D009385 1.0e-117 427.6 388 55.7
QL05p027928 Quercus lobata HOM05D007753 ORTHO05D009385 1.8e-117 426.8 377 56.0
Hma1.2p1_0515F.1_g170220 Hydrangea macrophylla HOM05D007753 ORTHO05D009385 6.7e-117 424.9 379 55.1
Gohir.A05G125300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 9.6e-116 421.0 381 53.3
Haze_16518 Corylus avellana HOM05D007753 ORTHO05D009385 1.3e-115 420.6 382 54.5
Manes.11G053400 Manihot esculenta HOM05D007753 ORTHO05D009385 2.1e-115 419.9 383 50.7
Rhsim08G0215900 Rhododendron simsii HOM05D007753 ORTHO05D009385 2.1e-115 419.9 375 52.8
Cc04_g04070 Coffea canephora HOM05D007753 ORTHO05D009385 3.6e-115 419.1 378 52.4
Lj5C69T4 Lonicera japonica HOM05D007753 ORTHO05D009385 5.3e-114 415.2 375 53.1
Gohir.D05G126300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 3.4e-113 412.5 381 52.8
Nitab4.5_0002257g0030 Nicotiana tabacum HOM05D007753 ORTHO05D009385 5.8e-113 411.8 378 53.4
Nitab4.5_0006574g0050 Nicotiana tabacum HOM05D007753 ORTHO05D009385 5.8e-113 411.8 379 54.1
Gorai.009G130300 Gossypium raimondii HOM05D007753 ORTHO05D009385 6.4e-112 408.3 381 52.5
Cfa002006 Carpinus fangiana HOM05D007753 ORTHO05D009385 2.7e-110 402.9 385 53.0
Sabra03G0036100 Salix brachista HOM05D007753 ORTHO05D009385 1.8e-109 400.2 381 50.9
PGSC0003DMG400000606 Solanum tuberosum HOM05D007753 ORTHO05D009385 1.8e-109 400.2 384 51.3
CsaV3_4G001420 Cucumis sativus L. HOM05D007753 ORTHO05D009385 5.1e-109 398.7 375 51.5
Solyc03g116480.1 Solanum lycopersicum HOM05D007753 ORTHO05D009385 1.5e-108 397.1 383 51.2
Peaxi162Scf00274g00826 Petunia axillaris HOM05D007753 ORTHO05D009385 1.9e-108 396.7 378 51.1
MELO3C017898.2 Cucumis melo HOM05D007753 ORTHO05D009385 5.6e-108 395.2 375 51.2
PGR102G0169 Punica granatum HOM05D007753 ORTHO05D009385 5.6e-108 395.2 377 51.5
Sopen03g035370 Solanum pennellii HOM05D007753 ORTHO05D009385 5.6e-108 395.2 383 50.9
TAR626G0264 Trochodendron aralioides HOM05D007753 ORTHO05D009385 9.6e-108 394.4 376 51.3
Cpa.g.sc10.226 Carica papaya HOM05D007753 ORTHO05D009385 1.3e-107 394.0 385 51.7
Prupe.3G081200 Prunus persica HOM05D007753 ORTHO05D009385 1.3e-107 394.0 393 50.6
TAR626G0406 Trochodendron aralioides HOM05D007753 ORTHO05D009385 1.1e-106 391.0 378 50.8
Dinv30574 Davidia involucrata HOM05D007753 ORTHO05D009385 4.0e-106 389.0 344 54.4
FvH4_6g30250 Fragaria vesca HOM05D007753 ORTHO05D009385 4.0e-106 389.0 386 51.3
FAN02G0819 Fragaria x ananassa HOM05D007753 ORTHO05D009385 4.0e-106 389.0 386 51.3
FAN14G1500 Fragaria x ananassa HOM05D007753 ORTHO05D009385 1.2e-105 387.5 386 51.3
MD17G1206200 Malus domestica HOM05D007753 ORTHO05D009385 7.6e-105 384.8 397 49.1
FAN05G5641 Fragaria x ananassa HOM05D007753 ORTHO05D009385 1.3e-104 384.0 386 51.0
Sed0004194 Sechium edule HOM05D007753 ORTHO05D009385 1.7e-104 383.6 375 50.1
RcHm_v2.0_Chr2g0136491 Rosa chinensis HOM05D007753 ORTHO05D009385 4.9e-104 382.1 394 50.0
SGA_v2.0_scaffold5G02663 Striga asiatica HOM05D007753 ORTHO05D009385 8.4e-104 381.3 376 48.4
ClCG00G004440 Citrullus lanatus HOM05D007753 ORTHO05D009385 2.5e-103 379.8 375 49.9
ClCG07G012780 Citrullus lanatus HOM05D007753 ORTHO05D009385 2.5e-103 379.8 375 49.9
CAN.G407.105 Capsicum annuum HOM05D007753 ORTHO05D009385 4.2e-103 379.0 380 50.8
Nn2g11967 Nelumbo nucifera HOM05D007753 ORTHO05D009385 7.1e-103 378.3 379 49.1
Nn8g39391 Nelumbo nucifera HOM05D007753 ORTHO05D009385 1.2e-102 377.5 377 48.5
Potri.003G062000 Populus trichocarpa HOM05D007753 ORTHO05D009385 1.8e-101 373.6 326 56.4
Migut.I00798 Erythranthe guttata HOM05D007753 ORTHO05D009385 9.6e-100 367.9 378 49.5
Ciclev10027449m.g Citrus clementina HOM05D007753 ORTHO05D009385 2.1e-99 366.7 301 57.8
Sed0009628 Sechium edule HOM05D007753 ORTHO05D009385 4.8e-99 365.5 375 48.3
TPR.G7327 Trifolium pratense HOM05D007753 ORTHO05D009385 1.1e-98 364.4 201 83.6
MSTRG.11118 Avicennia marina HOM05D007753 ORTHO05D009385 1.2e-97 360.9 374 48.1
HanXRQChr09g0274921 Helianthus annuus HOM05D007753 ORTHO05D009385 2.0e-97 360.1 379 48.5
TWI75G0540 Tripterygium wilfordii HOM05D007753 ORTHO05D009385 1.0e-96 357.8 374 48.7
CANSAT56G2472 Cannabis sativa HOM05D007753 ORTHO05D009385 9.3e-95 351.3 392 46.2
Aqoxy7G02101 Aquilegia oxysepala HOM05D007753 ORTHO05D009385 1.1e-92 344.4 386 45.3
ECA232G3915 Erigeron canadensis HOM05D007753 ORTHO05D009385 1.3e-91 340.9 377 45.9
HanXRQChr16g0500541 Helianthus annuus HOM05D007753 ORTHO05D009385 1.5e-89 334.0 379 44.3
DCAR_025487 Daucus carota HOM05D007753 ORTHO05D009385 2.0e-89 333.6 377 47.2
Eucgr.F02545 Eucalyptus grandis HOM05D007753 ORTHO05D009385 1.0e-88 331.3 283 56.9
Oeu015237.1 Olea europaea HOM05D007753 ORTHO05D009385 2.9e-88 329.7 371 47.4
CSS0017457 Camellia sinensis var. sinensis HOM05D007753 ORTHO05D009385 1.8e-85 320.5 376 46.5
QL05p063911 Quercus lobata HOM05D007753 ORTHO05D009385 9.7e-76 288.1 250 56.0
Rhsim03G0103900 Rhododendron simsii HOM05D007753 ORTHO05D009385 6.3e-75 285.4 353 43.9
Lsat_1_v5_gn_4_105861 Lactuca sativa HOM05D007753 ORTHO05D009385 1.4e-66 257.7 257 50.2
SEGI_20973 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 9.8e-52 208.4 385 31.9
Nn1g04494 Nelumbo nucifera HOM05D007753 ORTHO05D009385 4.5e-49 199.5 214 44.4
SEGI_19660 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 1.0e-48 198.4 372 32.0
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 1.7e-43 181.0 378 30.4
Rhsim03G0101500 Rhododendron simsii HOM05D007753 ORTHO05D009385 1.8e-42 177.6 154 51.3
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.4e-34 151.4 382 28.5
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 3.2e-34 150.2 385 28.3
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 3.3e-23 113.6 357 27.5
Mapoly0063s0081 Marchantia polymorpha HOM05D002809 ORTHO05D004563 3.6e-22 110.2 373 24.9
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 2.6e-20 104.0 327 26.9
Actinidia01765 Actinidia chinensis HOM05D007753 ORTHO05D009385 6.4e-19 99.4 100 49.0
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 1.1e-18 98.6 343 23.0
Nn4g24931 Nelumbo nucifera HOM05D007753 ORTHO05D009385 3.0e-16 90.5 139 39.6
Oeu006522.1 Olea europaea HOM05D002809 ORTHO05D004563 5.1e-16 89.7 389 23.7
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 2.8e-14 84.0 68 57.4
AagrBONN_evm.TU.Sc2ySwM_228.1930 Anthoceros agrestis HOM05D004302 ORTHO05D004939 6.2e-14 82.8 366 22.7
Lsat_1_v5_gn_8_147861 Lactuca sativa HOM05D002809 ORTHO05D004563 1.4e-13 81.6 303 24.1
Lj1g0009384 Lotus japonicus HOM05D007853 ORTHO05D009873 1.4e-13 81.6 357 23.2
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 2.6e-12 77.4 370 23.8
Mapoly0005s0092 Marchantia polymorpha HOM05D007753 ORTHO05D009385 4.4e-12 76.6 306 25.8
CSS0040524 Camellia sinensis var. sinensis HOM05D007853 ORTHO05D009873 5.8e-12 76.3 355 22.5
Oeu032833.1 Olea europaea HOM05D004302 ORTHO05D004939 7.6e-12 75.9 358 23.5
SalBow1G5644 Salvia bowleyana HOM05D004302 ORTHO05D004939 7.6e-12 75.9 359 23.4
MapolyY_A0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.2e-11 74.3 368 24.2
HanXRQChr14g0452511 Helianthus annuus HOM05D004302 ORTHO05D004939 3.8e-11 73.6 364 22.5
THA.LOC104820986 Tarenaya hassleriana HOM05D004302 ORTHO05D004939 3.8e-11 73.6 359 22.6
MSTRG.23851 Avicennia marina HOM05D004302 ORTHO05D004939 8.4e-11 72.4 359 22.0
CiPaw.03G081700 Carya illinoinensis HOM05D004302 ORTHO05D004939 8.4e-11 72.4 359 21.4
Hund13664 Selenicereus undatus HOM05D004302 ORTHO05D004939 1.4e-10 71.6 361 21.9
Solyc02g089310.1 Solanum lycopersicum HOM05D004302 ORTHO05D004939 1.4e-10 71.6 362 22.7
CAN.G497.49 Capsicum annuum HOM05D004302 ORTHO05D004939 1.9e-10 71.2 362 22.7
PGSC0003DMG400001472 Solanum tuberosum HOM05D004302 ORTHO05D004939 1.9e-10 71.2 362 22.7
Sopen02g034090 Solanum pennellii HOM05D004302 ORTHO05D004939 2.4e-10 70.9 362 22.7
Lsat_1_v5_gn_2_89480 Lactuca sativa HOM05D004302 ORTHO05D004939 3.2e-10 70.5 361 21.6
Nitab4.5_0001339g0010 Nicotiana tabacum HOM05D004302 ORTHO05D004939 3.2e-10 70.5 362 22.4
Nitab4.5_0002978g0090 Nicotiana tabacum HOM05D004302 ORTHO05D004939 5.4e-10 69.7 362 22.4
HanXRQChr07g0200041 Helianthus annuus HOM05D004302 ORTHO05D004939 7.1e-10 69.3 364 21.7
Ah.16g100910 Amaranthus hybridus HOM05D004302 ORTHO05D004939 9.3e-10 68.9 364 22.5
TPR.G3302 Trifolium pratense HOM05D004302 ORTHO05D004939 9.3e-10 68.9 364 20.9
MSTRG.10561 Avicennia marina HOM05D004302 ORTHO05D004939 1.2e-09 68.6 365 23.8
Ciclev10011780m.g Citrus clementina HOM05D004302 ORTHO05D004939 1.2e-09 68.6 361 21.6
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 1.6e-09 68.2 334 23.4
Cc07_g04590 Coffea canephora HOM05D004302 ORTHO05D004939 1.6e-09 68.2 362 21.5
Haze_14364 Corylus avellana HOM05D004302 ORTHO05D004939 1.6e-09 68.2 361 21.9
Hma1.2p1_2186F.1_g316430 Hydrangea macrophylla HOM05D004302 ORTHO05D004939 1.6e-09 68.2 361 21.6
Lalb_Chr04g0258341 Lupinus albus HOM05D004302 ORTHO05D004939 2.1e-09 67.8 362 22.7
Sc11g0008910 Simmondsia chinensis HOM05D004302 ORTHO05D004939 2.1e-09 67.8 363 22.3
TWI34G1614 Tripterygium wilfordii HOM05D004302 ORTHO05D004939 2.7e-09 67.4 361 21.3
Dinv04666 Davidia involucrata HOM05D007853 ORTHO05D009873 3.5e-09 67.0 290 24.5
GSVIVG01036521001 Vitis vinifera HOM05D004302 ORTHO05D004939 4.6e-09 66.6 361 21.6
CANSAT64G2833 Cannabis sativa HOM05D004302 ORTHO05D004939 6.0e-09 66.2 359 21.2
CSS0037679 Camellia sinensis var. sinensis HOM05D004302 ORTHO05D004939 7.8e-09 65.9 358 21.8
MELO3C022055.2 Cucumis melo HOM05D004302 ORTHO05D004939 7.8e-09 65.9 360 21.1
CsaV3_5G038750 Cucumis sativus L. HOM05D004302 ORTHO05D004939 1.0e-08 65.5 360 21.1
Cfa007709 Carpinus fangiana HOM05D004302 ORTHO05D004939 1.3e-08 65.1 358 20.9
ClCG11G005010 Citrullus lanatus HOM05D004302 ORTHO05D004939 1.3e-08 65.1 360 21.1
Mapoly0045s0086 Marchantia polymorpha HOM05D005977 ORTHO05D009385 1.3e-08 65.1 251 24.7
QL02p064995 Quercus lobata HOM05D004302 ORTHO05D004939 1.7e-08 64.7 361 21.6
HanXRQChr17g0567861 Helianthus annuus HOM05D004302 ORTHO05D004939 2.3e-08 64.3 362 21.8
Hma1.2p1_0448F.1_g154860 Hydrangea macrophylla HOM05D004302 ORTHO05D004939 3.9e-08 63.5 361 21.3
Dinv34899 Davidia involucrata HOM05D004302 ORTHO05D004939 5.1e-08 63.2 361 21.3
MBI15_g46819_MAGBIO Magnolia biondii HOM05D004302 ORTHO05D004939 6.6e-08 62.8 359 21.2
BcaC09g52124 Brassica carinata HOM05D006415 ORTHO05D008549 2.5e-07 60.8 281 25.3
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 2.5e-07 60.8 347 22.8
Dinv07005 Davidia involucrata HOM05D000007 ORTHO05D000039 1.3e-06 58.5 305 23.6
Peaxi162Scf00020g00221 Petunia axillaris HOM05D004302 ORTHO05D004939 2.1e-06 57.8 195 24.1
Gohir.A05G269900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 3.6e-06 57.0 136 29.4
Gohir.D05G271900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 3.6e-06 57.0 136 29.4
Gorai.009G284900 Gossypium raimondii HOM05D006114 ORTHO05D007609 3.6e-06 57.0 136 29.4
Mapoly0045s0085 Marchantia polymorpha HOM05D002809 ORTHO05D004939 4.8e-06 56.6 204 25.5
Cc10_g14550 Coffea canephora HOM05D006114 ORTHO05D007609 6.2e-06 56.2 145 29.7
Dinv07009 Davidia involucrata HOM05D000007 ORTHO05D000039 6.2e-06 56.2 309 23.3
TWI32G1226 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 6.2e-06 56.2 142 28.2
TAR622G0792 Trochodendron aralioides HOM05D004302 ORTHO05D004939 8.1e-06 55.8 191 25.7


User provided reference genes

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