Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 7.6e-180 633.6 304 100.0
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 1.4e-141 506.5 319 79.0
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 2.9e-139 498.8 296 81.4
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 3.8e-131 471.9 331 72.5
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 8.2e-126 454.1 293 75.4
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 2.2e-118 429.5 290 71.7
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 8.5e-115 417.5 287 70.7
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 3.2e-114 415.6 290 69.7
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 1.8e-112 409.8 289 68.5
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 6.8e-112 407.9 297 67.7
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 6.8e-112 407.9 297 67.7
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 1.2e-111 407.1 297 67.7
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 5.9e-100 368.2 285 61.8
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 5.0e-99 365.2 285 61.8
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 1.8e-96 356.7 284 60.6
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 6.8e-96 354.8 287 61.0
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 1.5e-95 353.6 296 58.8
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 3.4e-95 352.4 290 60.7
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 5.8e-95 351.7 285 60.4
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 1.3e-94 350.5 296 62.5
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 1.3e-94 350.5 285 61.1
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 3.7e-94 349.0 285 57.2
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 1.4e-93 347.1 286 60.8
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 5.4e-93 345.1 282 58.5
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 1.2e-92 344.0 287 57.1
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.6e-92 343.6 287 57.8
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 2.7e-92 342.8 287 57.5
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 2.3e-91 339.7 288 55.9
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 5.0e-91 338.6 288 55.6
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 6.6e-91 338.2 284 56.7
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 8.6e-91 337.8 292 54.1
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 1.9e-90 336.7 290 56.2
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 4.3e-90 335.5 290 56.2
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 5.6e-90 335.1 288 58.3
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 5.6e-90 335.1 290 55.9
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 3.6e-89 332.4 282 56.7
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 6.2e-89 331.6 280 58.2
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 8.0e-89 331.3 285 55.4
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 1.4e-88 330.5 305 56.7
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 4.0e-88 328.9 288 56.2
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 1.2e-87 327.4 281 55.5
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.5e-87 327.0 282 55.0
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 2.0e-87 326.6 287 56.8
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.6e-87 326.2 282 55.0
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 3.4e-87 325.9 288 55.6
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 3.4e-87 325.9 283 56.5
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 5.8e-87 325.1 285 55.4
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 1.7e-86 323.6 284 54.9
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 2.2e-86 323.2 284 54.2
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 2.9e-86 322.8 290 55.5
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 6.0e-84 315.1 284 54.9
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 6.6e-83 311.6 282 54.3
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 3.3e-82 309.3 282 55.3
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 9.5e-82 307.8 273 53.1
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 2.8e-81 306.2 297 52.5
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 1.4e-80 303.9 241 62.2
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 1.2e-79 300.8 284 51.4
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 1.5e-79 300.4 286 49.7
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 2.6e-79 299.7 289 52.9
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 5.8e-79 298.5 235 60.0
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 3.7e-78 295.8 294 52.0
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 8.3e-78 294.7 282 50.7
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 3.9e-75 285.8 289 51.2
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 3.9e-75 285.8 237 58.2
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 5.1e-75 285.4 287 50.5
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 5.1e-75 285.4 280 49.3
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 3.3e-74 282.7 287 50.2
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 1.6e-73 280.4 233 57.1
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 4.0e-72 275.8 244 57.4
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 9.9e-71 271.2 284 48.6
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 8.4e-70 268.1 278 46.0
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 5.4e-69 265.4 281 48.4
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 7.1e-69 265.0 195 63.6
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 1.0e-67 261.2 293 43.7
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 6.2e-65 251.9 192 66.7
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 5.3e-64 248.8 331 41.1
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 1.2e-63 247.7 293 45.1
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 4.2e-61 239.2 286 43.4
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.2e-60 237.7 199 56.8
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 1.6e-60 237.3 187 62.6
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 1.0e-59 234.6 241 50.6
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.2e-55 221.1 181 56.4
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 4.9e-54 215.7 289 39.1
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 7.9e-52 208.4 175 61.1
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 2.1e-49 200.3 287 37.3
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 1.5e-47 194.1 181 54.7
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 7.1e-45 185.3 134 59.7
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.9e-42 177.2 160 55.0
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 2.1e-41 173.7 259 39.8
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 8.2e-41 171.8 289 33.2
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 3.4e-39 166.4 239 38.5
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 5.1e-35 152.5 109 64.2
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 7.4e-34 148.7 158 52.5
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 9.7e-34 148.3 319 32.0
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 8.5e-30 135.2 140 50.0
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 4.1e-24 116.3 75 72.0
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 2.0e-23 114.0 92 55.4
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 2.1e-20 104.0 89 62.9
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 7.9e-20 102.1 253 30.0
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.6e-15 87.8 117 39.3
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 1.5e-13 81.3 84 53.6
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.9e-13 80.9 263 28.1
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.0e-11 73.6 230 28.3
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 6.7e-11 72.4 167 32.3
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 6.7e-11 72.4 166 31.9
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.1e-10 71.6 228 27.6
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.5e-10 71.2 228 27.6
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 1.5e-10 71.2 169 32.0
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.5e-10 71.2 228 28.1
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 1.5e-10 71.2 264 26.1
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 2.6e-10 70.5 167 31.7
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 3.3e-10 70.1 228 27.2
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 4.4e-10 69.7 265 26.8
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 5.7e-10 69.3 251 25.1
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 3.7e-09 66.6 262 26.0
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 4.8e-09 66.2 266 28.6
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 4.8e-09 66.2 228 27.2
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 6.3e-09 65.9 255 24.7
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 6.3e-09 65.9 230 27.4
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 6.3e-09 65.9 251 25.9
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.1e-08 65.1 228 27.2
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 1.1e-08 65.1 226 26.1
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 1.4e-08 64.7 256 25.4
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 3.1e-08 63.5 268 25.7
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 3.1e-08 63.5 231 26.8
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 3.1e-08 63.5 277 26.0
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 4.1e-08 63.2 171 33.3
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 4.1e-08 63.2 188 26.6
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 5.3e-08 62.8 261 24.9
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 5.3e-08 62.8 229 26.6
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 7.0e-08 62.4 168 28.6
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 7.0e-08 62.4 216 28.7
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 7.0e-08 62.4 266 25.2
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 7.0e-08 62.4 223 26.0
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 9.1e-08 62.0 220 26.8
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 1.2e-07 61.6 267 24.3
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 1.2e-07 61.6 267 24.3
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.2e-07 61.6 270 24.8
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 1.2e-07 61.6 260 24.2
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.6e-07 61.2 206 27.2
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.6e-07 61.2 255 23.1
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.0e-07 60.8 176 30.7
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.0e-07 60.8 250 26.0
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 2.0e-07 60.8 37 70.3
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 2.0e-07 60.8 260 23.8
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 2.7e-07 60.5 232 26.7
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 3.5e-07 60.1 250 24.8
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 4.5e-07 59.7 257 24.5
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 4.5e-07 59.7 167 28.1
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 5.9e-07 59.3 174 28.7
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 5.9e-07 59.3 250 24.0
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 5.9e-07 59.3 251 24.3
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 5.9e-07 59.3 251 24.3
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 5.9e-07 59.3 39 64.1
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 5.9e-07 59.3 266 23.7
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 5.9e-07 59.3 183 30.6
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 5.9e-07 59.3 164 28.0
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 7.7e-07 58.9 259 26.3
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 7.7e-07 58.9 172 28.5
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 7.7e-07 58.9 261 25.3
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 1.0e-06 58.5 233 27.0
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.3e-06 58.2 250 24.8
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.3e-06 58.2 250 23.2
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 1.7e-06 57.8 264 26.5
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 1.7e-06 57.8 264 26.5
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.7e-06 57.8 168 29.2
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 2.2e-06 57.4 228 25.4
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 2.2e-06 57.4 168 28.6
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 2.9e-06 57.0 256 24.6
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 2.9e-06 57.0 168 29.2
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 2.9e-06 57.0 212 25.0
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.9e-06 57.0 209 26.8
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 2.9e-06 57.0 223 25.6
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 3.8e-06 56.6 167 26.9
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 3.8e-06 56.6 203 26.1
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 3.8e-06 56.6 232 26.7
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 5.0e-06 56.2 168 28.6
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 5.0e-06 56.2 253 27.7
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 6.5e-06 55.8 164 27.4
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 6.5e-06 55.8 168 28.6
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 6.5e-06 55.8 175 27.4
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 6.5e-06 55.8 169 28.4
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 8.5e-06 55.5 164 27.4
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 8.5e-06 55.5 152 28.3


User provided reference genes

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