Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.8e-273 945.3 469 100.0
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 1.4e-220 769.6 465 81.9
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 4.0e-204 714.9 481 75.5
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 3.5e-192 675.2 487 70.8
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 6.0e-192 674.5 494 70.0
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 3.9e-191 671.8 494 69.4
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 6.6e-191 671.0 494 69.2
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 1.1e-190 670.2 492 69.5
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.5e-190 669.8 492 69.7
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-190 669.5 494 70.0
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.6e-190 667.9 494 69.8
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 7.3e-190 667.5 494 69.6
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.6e-189 666.4 491 69.7
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-188 663.3 494 69.8
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 3.4e-187 658.7 494 68.6
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 3.8e-186 655.2 486 69.1
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 7.1e-185 651.0 491 68.6
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 2.3e-183 646.0 475 68.2
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 8.7e-183 644.0 486 68.1
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.9e-182 642.9 487 68.2
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.2e-181 640.2 475 67.2
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 4.7e-181 638.3 490 66.3
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 8.1e-181 637.5 492 64.6
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.8e-180 636.3 483 67.5
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 4.0e-180 635.2 486 65.8
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 2.0e-179 632.9 480 66.2
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 5.8e-179 631.3 494 65.4
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 9.9e-179 630.6 488 65.6
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.7e-178 629.8 484 65.3
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.9e-178 629.0 478 66.3
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 2.9e-178 629.0 488 65.4
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 3.8e-178 628.6 483 67.1
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 4.9e-178 628.2 484 66.3
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 6.4e-178 627.9 488 65.2
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 6.4e-178 627.9 479 66.8
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 8.4e-178 627.5 493 64.5
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.4e-177 626.7 478 66.1
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 1.9e-177 626.3 488 64.8
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.9e-177 626.3 486 67.1
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 4.2e-177 625.2 489 64.2
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 5.4e-177 624.8 479 64.3
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 5.4e-177 624.8 465 66.5
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 1.6e-176 623.2 486 65.2
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.1e-176 622.9 489 64.8
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 2.7e-176 622.5 493 66.5
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 4.6e-176 621.7 488 64.3
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 4.6e-176 621.7 484 65.3
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 6.0e-176 621.3 494 65.6
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 7.8e-176 620.9 490 64.7
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.0e-175 620.5 488 64.8
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 3.9e-175 618.6 498 62.9
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 8.7e-175 617.5 489 64.0
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.5e-174 615.9 484 64.9
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.3e-174 615.5 488 65.2
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 3.3e-174 615.5 488 65.0
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 5.6e-174 614.8 488 64.5
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 5.6e-174 614.8 481 65.9
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 7.3e-174 614.4 481 65.1
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 7.3e-174 614.4 482 63.9
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 9.6e-174 614.0 484 65.3
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 1.3e-173 613.6 487 65.7
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.6e-173 613.2 482 64.1
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 2.1e-173 612.8 481 66.1
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.6e-173 612.1 488 64.3
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.6e-173 612.1 482 63.5
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 8.1e-173 610.9 485 64.9
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 8.1e-173 610.9 491 64.6
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.1e-172 610.5 482 63.7
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.1e-172 610.5 489 64.6
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.1e-172 610.5 489 64.6
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 2.4e-172 609.4 465 66.2
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 3.1e-172 609.0 482 64.1
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 4.0e-172 608.6 488 63.3
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 9.0e-172 607.4 482 64.3
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.2e-171 607.1 488 63.7
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 2.6e-171 605.9 485 64.5
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 5.8e-171 604.7 485 64.1
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 5.8e-171 604.7 488 63.7
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 9.9e-171 604.0 489 64.0
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 9.9e-171 604.0 482 64.5
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 1.3e-170 603.6 491 63.1
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.7e-170 603.2 486 63.2
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.7e-170 603.2 482 64.1
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 2.2e-170 602.8 480 64.4
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 2.2e-170 602.8 486 63.2
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 4.9e-170 601.7 491 62.9
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 4.9e-170 601.7 491 62.9
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 4.9e-170 601.7 524 60.9
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-169 600.1 488 62.7
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.9e-169 599.7 486 62.6
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.9e-169 599.7 486 62.6
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 2.4e-169 599.4 499 61.9
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 7.1e-169 597.8 502 62.4
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 9.3e-169 597.4 508 61.6
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 3.5e-168 595.5 491 62.3
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.5e-166 590.1 481 63.0
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 7.4e-166 587.8 482 63.1
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.8e-164 583.2 486 61.3
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 6.9e-164 581.3 494 59.5
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 2.6e-163 579.3 484 61.2
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 3.5e-160 568.9 489 59.7
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 3.5e-160 568.9 524 59.0
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 7.9e-160 567.8 511 58.3
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 5.1e-159 565.1 493 59.4
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 6.7e-159 564.7 479 59.5
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 1.5e-158 563.5 489 58.5
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 1.5e-158 563.5 468 59.8
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 3.3e-158 562.4 488 57.8
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 5.6e-158 561.6 485 59.2
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.1e-156 557.4 524 58.4
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 4.0e-156 555.4 453 62.5
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 1.3e-154 550.4 492 59.1
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 4.9e-154 548.5 488 57.8
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 5.5e-153 545.0 566 54.1
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 9.3e-153 544.3 577 51.5
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 6.0e-152 541.6 493 54.6
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 7.9e-152 541.2 493 58.8
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 2.3e-151 539.7 487 59.1
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 6.7e-151 538.1 393 70.7
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 2.5e-150 536.2 500 54.0
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 2.5e-150 536.2 489 56.2
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 3.1e-148 529.3 436 63.1
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 7.7e-147 524.6 475 55.6
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.9e-146 522.7 403 66.5
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.8e-138 495.7 387 68.2
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 2.5e-137 493.0 451 54.8
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 5.7e-134 481.9 502 50.2
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 8.2e-133 478.0 501 53.7
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.7e-130 470.3 358 69.0
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 6.5e-130 468.4 494 50.0
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.7e-128 462.2 342 70.5
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 1.8e-127 460.3 393 62.1
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 2.3e-127 459.9 380 63.2
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.5e-126 457.2 396 59.6
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 9.7e-118 427.9 349 63.6
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 2.8e-117 426.4 541 46.2
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.1e-116 422.9 393 60.8
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 3.2e-113 412.9 355 62.5
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 2.9e-106 389.8 359 59.1
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 1.1e-105 387.9 468 46.4
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.5e-105 386.7 281 70.8
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.3e-101 372.1 272 70.6
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.3e-97 359.8 297 63.0
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 2.0e-94 350.5 276 66.3
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 8.3e-93 345.1 293 60.8
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 9.6e-73 278.5 236 61.4
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 8.4e-69 265.4 471 35.5
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.4e-69 265.4 186 71.5
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.3e-68 261.9 184 70.7
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 1.3e-66 258.1 245 58.8
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 2.2e-53 214.2 205 56.6
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 3.2e-52 210.3 200 54.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 2.6e-46 190.7 234 49.1
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 5.8e-46 189.5 139 65.5
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 3.8e-45 186.8 135 68.9
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.6e-43 181.4 135 65.9
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.8e-42 177.9 239 46.0
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 1.1e-41 175.3 149 61.1
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.0e-37 162.2 113 69.9
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.2e-37 161.0 284 41.5
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 2.7e-35 154.1 125 61.6
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.3e-34 151.0 127 59.1
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.5e-33 148.3 113 66.4
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.4e-28 131.7 140 50.0
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.8e-26 124.8 92 63.0
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.8e-26 124.8 92 63.0
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 8.5e-21 105.9 97 59.8
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.5e-20 104.4 65 78.5
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.1e-19 101.3 65 75.4
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 2.1e-19 101.3 67 68.7
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 2.7e-19 100.9 63 76.2
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 2.7e-19 100.9 69 69.6
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 6.1e-19 99.8 65 73.8
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 2.6e-17 94.4 74 60.8
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 4.4e-17 93.6 65 76.9
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 1.3e-16 92.0 162 40.1
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.7e-16 91.7 77 63.6
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 3.5e-14 84.0 67 59.7
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 5.0e-13 80.1 91 45.1
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.4e-09 67.0 46 60.9
Cre08.g372850 Chlamydomonas reinhardtii HOM05D059678 ORTHO05D044246 4.8e-08 63.5 122 32.8
PRCOL_00005866 Prasinoderma coloniale HOM05D059678 ORTHO05D044246 1.2e-06 58.9 112 32.1


User provided reference genes

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