Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 1.3e-38 162.5 81 100.0
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 3.5e-31 137.9 81 86.4
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 8.6e-30 133.3 81 81.5
Medtr3g055700 Medicago truncatula HOM05D007252 ORTHO05D009074 5.6e-29 130.6 81 80.2
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 5.7e-26 120.6 78 75.6
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 1.3e-25 119.4 76 75.0
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 3.7e-25 117.9 78 70.5
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 3.7e-25 117.9 78 70.5
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 3.7e-25 117.9 78 70.5
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 5.9e-23 110.5 75 72.0
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 4.0e-19 97.8 75 66.7
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 8.9e-19 96.7 75 65.3
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.5e-18 95.9 60 75.0
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 4.9e-17 90.9 60 70.0
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 1.4e-16 89.4 60 70.0
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 2.4e-16 88.6 61 65.6
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 7.0e-16 87.0 60 66.7
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.2e-15 86.3 60 66.7
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 2.0e-15 85.5 60 63.3
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 6.0e-15 84.0 60 65.0
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 6.0e-15 84.0 60 65.0
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 7.8e-15 83.6 60 65.0
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 7.8e-15 83.6 60 63.3
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 1.3e-14 82.8 60 65.0
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 1.7e-14 82.4 60 63.3
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 2.3e-14 82.0 60 60.0
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.3e-14 82.0 61 60.7
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 3.0e-14 81.6 60 61.7
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 3.9e-14 81.3 61 60.7
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 8.6e-14 80.1 60 66.7
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.1e-13 79.7 61 59.0
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.9e-13 79.0 57 66.7
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 1.9e-13 79.0 61 59.0
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 2.5e-13 78.6 60 61.7
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 2.5e-13 78.6 58 60.3
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 3.3e-13 78.2 60 60.0
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 4.3e-13 77.8 60 61.7
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 4.3e-13 77.8 60 60.0
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 4.3e-13 77.8 60 60.0
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 4.3e-13 77.8 60 60.0
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 4.3e-13 77.8 60 60.0
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 4.3e-13 77.8 60 60.0
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 7.3e-13 77.0 60 61.7
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 9.5e-13 76.6 60 61.7
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 9.5e-13 76.6 60 61.7
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 9.5e-13 76.6 60 61.7
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 9.5e-13 76.6 60 61.7
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 9.5e-13 76.6 60 61.7
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 9.5e-13 76.6 60 61.7
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 9.5e-13 76.6 58 60.3
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.2e-12 76.3 61 57.4
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 2.1e-12 75.5 54 63.0
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 2.8e-12 75.1 60 60.0
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 2.8e-12 75.1 60 60.0
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 2.8e-12 75.1 60 60.0
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 2.8e-12 75.1 60 63.3
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 2.8e-12 75.1 60 61.7
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 8.1e-12 73.6 61 54.1
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 1.4e-11 72.8 60 60.0
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 1.4e-11 72.8 60 60.0
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 4.0e-11 71.2 57 61.4
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 5.2e-11 70.9 48 60.4
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 8.9e-11 70.1 76 47.4
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 1.5e-10 69.3 60 55.0
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 2.0e-10 68.9 61 57.4
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 2.6e-10 68.6 60 56.7
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.7e-09 65.9 53 56.6
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 2.2e-09 65.5 60 50.0
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 6.4e-09 63.9 46 63.0
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 3.2e-08 61.6 53 49.1
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 3.2e-08 61.6 53 49.1
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 3.2e-08 61.6 48 54.2
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 4.1e-08 61.2 60 51.7
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 6.0e-07 57.4 53 50.9
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 6.0e-07 57.4 53 52.8
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 7.8e-07 57.0 47 53.2
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 7.8e-07 57.0 57 50.9
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 1.0e-06 56.6 53 49.1
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 1.3e-06 56.2 43 55.8
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 1.7e-06 55.8 53 50.9
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 2.3e-06 55.5 60 45.0
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 2.3e-06 55.5 56 42.9
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 3.0e-06 55.1 53 43.4
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 3.9e-06 54.7 59 45.8
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 8.6e-06 53.5 53 47.2


User provided reference genes

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