Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.4e-150 535.0 278 100.0
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.8e-103 379.8 275 72.7
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 7.1e-100 367.9 268 78.0
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 1.9e-97 359.8 263 73.0
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 9.6e-97 357.5 279 71.3
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 6.9e-95 351.3 274 71.9
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.2e-94 350.5 256 72.7
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.5e-94 350.1 248 75.0
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.5e-94 350.1 256 72.7
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 3.4e-94 349.0 276 68.1
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 5.8e-94 348.2 273 70.3
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 5.8e-94 348.2 250 72.8
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 2.9e-93 345.9 275 68.4
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 4.9e-93 345.1 263 70.0
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.2e-92 342.0 243 70.8
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 4.2e-92 342.0 229 73.4
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 5.4e-92 341.7 259 71.8
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 5.4e-92 341.7 246 72.0
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 7.1e-92 341.3 247 72.5
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 1.2e-91 340.5 250 70.8
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 2.1e-91 339.7 242 70.7
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 2.1e-91 339.7 242 70.7
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 7.9e-91 337.8 278 65.5
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.0e-90 337.4 241 72.6
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 2.3e-90 336.3 245 71.8
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 3.0e-90 335.9 282 66.3
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 1.9e-89 333.2 243 72.0
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.5e-89 332.8 227 73.6
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 2.5e-89 332.8 272 65.8
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 2.5e-89 332.8 242 70.2
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 2.5e-89 332.8 257 67.7
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 2.5e-89 332.8 256 69.1
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.6e-89 331.6 265 69.1
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 3.7e-88 328.9 264 67.4
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 8.1e-88 327.8 278 66.9
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.1e-87 327.4 240 70.8
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 2.4e-87 326.2 209 76.6
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.4e-87 326.2 267 66.7
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 3.1e-87 325.9 260 68.1
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 3.1e-87 325.9 244 68.4
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 3.1e-87 325.9 241 69.7
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.3e-87 325.1 274 66.8
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.9e-87 324.7 246 69.5
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.5e-86 323.6 246 69.5
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 2.6e-86 322.8 279 64.5
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 2.6e-86 322.8 279 64.5
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 5.8e-86 321.6 209 75.6
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 5.8e-86 321.6 250 65.6
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 7.6e-86 321.2 209 76.6
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 9.9e-86 320.9 200 79.0
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 9.9e-86 320.9 250 66.0
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.3e-85 320.5 250 65.6
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 1.7e-85 320.1 248 68.1
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 2.2e-85 319.7 278 61.9
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.8e-85 318.9 243 69.1
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 3.8e-85 318.9 280 61.4
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 4.9e-85 318.5 241 68.5
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 8.4e-85 317.8 262 62.2
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.1e-84 317.4 236 71.2
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.9e-84 316.6 276 60.1
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.9e-84 316.6 200 77.5
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.5e-84 316.2 239 69.9
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 4.2e-84 315.5 238 72.3
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 4.2e-84 315.5 236 69.1
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 5.5e-84 315.1 268 63.4
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 9.3e-84 314.3 252 64.7
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.6e-83 313.5 236 68.6
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.1e-83 313.2 232 69.0
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.7e-83 312.8 268 66.8
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 3.5e-83 312.4 247 63.6
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 3.5e-83 312.4 273 62.6
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 3.5e-83 312.4 242 67.4
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 4.6e-83 312.0 209 73.7
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 4.6e-83 312.0 209 73.7
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.8e-82 310.1 241 68.5
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.3e-82 309.7 200 76.5
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 3.0e-82 309.3 241 70.5
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 3.0e-82 309.3 277 59.6
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 3.9e-82 308.9 243 69.1
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 5.1e-82 308.5 271 65.3
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 5.1e-82 308.5 233 66.5
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 6.7e-82 308.1 209 71.8
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 8.7e-82 307.8 270 64.8
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 1.1e-81 307.4 265 61.1
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 1.5e-81 307.0 236 69.5
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 1.9e-81 306.6 241 70.1
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.9e-81 306.6 209 71.8
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 1.9e-81 306.6 279 61.3
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.5e-81 306.2 232 67.2
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 3.3e-81 305.8 208 72.1
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 5.6e-81 305.1 231 69.7
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 7.4e-81 304.7 236 68.2
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 7.4e-81 304.7 236 68.2
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 2.1e-80 303.1 286 59.1
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 2.8e-80 302.8 238 62.6
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 4.8e-80 302.0 277 61.0
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 4.8e-80 302.0 208 76.4
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 6.2e-80 301.6 193 77.7
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 2.4e-79 299.7 275 62.2
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.0e-79 298.9 224 68.8
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 4.0e-79 298.9 219 69.9
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.5e-78 297.0 201 73.6
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 2.6e-78 296.2 202 73.3
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 2.6e-78 296.2 200 73.0
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 5.5e-76 288.5 197 73.6
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.6e-75 287.0 182 79.1
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 2.7e-75 286.2 236 65.3
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 6.0e-75 285.0 192 71.9
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 6.7e-74 281.6 179 77.1
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 3.3e-73 279.3 199 71.9
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 3.1e-71 272.7 201 69.7
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 5.3e-71 271.9 223 65.5
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.5e-70 270.4 208 66.3
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 5.9e-70 268.5 201 68.7
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.3e-69 267.3 200 67.0
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.2e-69 266.5 273 54.2
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 2.2e-69 266.5 199 68.3
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.1e-68 264.2 255 58.0
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.4e-68 263.8 177 72.3
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 4.2e-68 262.3 177 71.8
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.6e-67 260.4 280 59.3
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 7.9e-67 258.1 179 70.9
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 3.1e-63 246.1 238 58.4
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 1.0e-61 241.1 184 66.8
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 2.2e-61 240.0 268 53.7
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 8.5e-61 238.0 171 71.9
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 3.2e-60 236.1 209 58.9
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 5.5e-60 235.3 270 53.7
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 7.4e-57 224.9 272 50.7
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 4.8e-56 222.2 165 65.5
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 4.8e-56 222.2 165 65.5
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.1e-55 221.1 184 64.1
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 8.0e-51 204.9 192 58.9
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 5.2e-50 202.2 131 77.1
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 7.2e-44 181.8 116 75.9
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 3.6e-43 179.5 206 48.1
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.2e-41 174.5 187 50.8
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 7.5e-41 171.8 114 71.9
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 3.0e-34 149.8 96 77.1
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-33 147.9 216 44.0
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 2.8e-32 143.3 143 65.7
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.4e-31 139.0 87 78.2
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.2e-30 137.9 204 42.6
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.1e-27 127.1 213 40.8
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 2.3e-26 123.6 206 37.9
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 4.0e-26 122.9 140 58.6
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 9.2e-23 111.7 97 57.7
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 4.5e-22 109.4 211 34.6
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 8.6e-21 105.1 207 34.8
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 2.5e-20 103.6 70 70.0
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 4.3e-20 102.8 66 78.8
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 9.8e-17 91.7 217 32.3
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 1.5e-12 77.8 153 37.9
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 3.3e-12 76.6 112 45.5
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 1.8e-10 70.9 65 53.8
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.2e-09 68.2 38 81.6
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 1.5e-09 67.8 67 61.2


User provided reference genes

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