Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20051_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 3.0e-67 258.5 137 100.0
Ca_30916_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 4.0e-56 221.5 116 100.0
Medtr4g035825 Medicago truncatula HOM05D007220 ORTHO05D009058 2.6e-34 149.1 122 70.5
Psat7g150000 Pisum sativum HOM05D007220 ORTHO05D009058 1.3e-30 136.7 123 68.3
Glyma.09G232600 Glycine max HOM05D007220 ORTHO05D009058 1.8e-19 99.8 128 53.9
Lj3g0016008 Lotus japonicus HOM05D007220 ORTHO05D009058 3.7e-17 92.0 130 52.3
TPR.G15117 Trifolium pratense HOM05D007220 ORTHO05D009058 8.3e-17 90.9 160 45.6
VMungo1127G0384 Vigna mungo HOM05D007220 ORTHO05D009058 1.6e-15 86.7 134 47.0
Manes.14G034000 Manihot esculenta HOM05D007220 ORTHO05D009058 4.5e-15 85.1 152 42.1
BraA03t10902Z Brassica rapa HOM05D007220 ORTHO05D009058 7.7e-15 84.3 99 49.5
Sc19g0001910 Simmondsia chinensis HOM05D007220 ORTHO05D009058 1.3e-14 83.6 130 45.4
Cfa008220 Carpinus fangiana HOM05D007220 ORTHO05D009058 1.7e-14 83.2 146 41.1
Haze_13838 Corylus avellana HOM05D007220 ORTHO05D009058 2.9e-14 82.4 145 41.4
FvH4_7g27960 Fragaria vesca HOM05D007220 ORTHO05D009058 2.9e-14 82.4 106 47.2
TWI39G1186 Tripterygium wilfordii HOM05D007220 ORTHO05D009058 2.9e-14 82.4 146 43.2
Dinv28549 Davidia involucrata HOM05D007220 ORTHO05D009058 6.5e-14 81.3 113 45.1
FAN06G4318 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.1e-13 80.5 105 46.7
Thecc.03G158900 Theobroma cacao HOM05D007220 ORTHO05D009058 1.5e-13 80.1 146 42.5
FAN03G0488 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.9e-13 79.7 106 46.2
FAN03G2818 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.9e-13 79.7 106 46.2
BcaC01g06128 Brassica carinata HOM05D007220 ORTHO05D009058 2.5e-13 79.3 99 47.5
C03p18980 Brassica napus HOM05D007220 ORTHO05D009058 2.5e-13 79.3 99 47.5
BolC3t14287H Brassica oleracea HOM05D007220 ORTHO05D009058 2.5e-13 79.3 99 47.5
Phvul.011G004500 Phaseolus vulgaris HOM05D007220 ORTHO05D009058 2.5e-13 79.3 134 44.8
arahy.Tifrunner.gnm1.ann1.0IXC5E Arachis hypogaea HOM05D007220 ORTHO05D009058 3.2e-13 79.0 62 67.7
arahy.Tifrunner.gnm1.ann1.83G6QR Arachis hypogaea HOM05D007220 ORTHO05D009058 3.2e-13 79.0 62 67.7
vmacro09892 Vaccinium macrocarpon HOM05D007220 ORTHO05D009058 3.2e-13 79.0 79 58.2
Cc02_g04040 Coffea canephora HOM05D007220 ORTHO05D009058 4.2e-13 78.6 85 51.8
DCAR_009422 Daucus carota HOM05D007220 ORTHO05D009058 7.2e-13 77.8 128 45.3
DCAR_009423 Daucus carota HOM05D007220 ORTHO05D009058 7.2e-13 77.8 128 45.3
FAN01G2832 Fragaria x ananassa HOM05D007220 ORTHO05D009058 7.2e-13 77.8 106 46.2
ClCG05G007450 Citrullus lanatus HOM05D007220 ORTHO05D009058 9.4e-13 77.4 114 45.6
FAN10G3220 Fragaria x ananassa HOM05D007220 ORTHO05D009058 9.4e-13 77.4 106 46.2
GSVIVG01018558001 Vitis vinifera HOM05D007220 ORTHO05D009058 9.4e-13 77.4 98 50.0
MELO3C006826.2 Cucumis melo HOM05D007220 ORTHO05D009058 1.2e-12 77.0 114 46.5
FAN06G0674 Fragaria x ananassa HOM05D007220 ORTHO05D009058 2.1e-12 76.3 106 45.3
TAR629G2293 Trochodendron aralioides HOM05D007220 ORTHO05D009058 2.1e-12 76.3 131 39.7
EL10Ac3g05813 Beta vulgaris HOM05D007220 ORTHO05D009058 2.7e-12 75.9 94 48.9
Nn4g26358 Nelumbo nucifera HOM05D007220 ORTHO05D009058 3.6e-12 75.5 126 39.7
Solyc03g083570.3 Solanum lycopersicum HOM05D007220 ORTHO05D009058 6.1e-12 74.7 79 53.2
AUR62016183 Chenopodium quinoa HOM05D007220 ORTHO05D009058 1.0e-11 73.9 120 42.5
Carub.0008s1158 Capsella rubella HOM05D007220 ORTHO05D009058 1.4e-11 73.6 118 42.4
Eucgr.A02878 Eucalyptus grandis HOM05D007220 ORTHO05D009058 1.4e-11 73.6 108 42.6
HanXRQChr08g0223851 Helianthus annuus HOM05D007220 ORTHO05D009058 1.4e-11 73.6 92 48.9
CsaV3_3G016270 Cucumis sativus L. HOM05D007220 ORTHO05D009058 1.8e-11 73.2 146 39.7
BcaB01g04168 Brassica carinata HOM05D007220 ORTHO05D009058 2.3e-11 72.8 99 46.5
Dinv22967 Davidia involucrata HOM05D007220 ORTHO05D009058 2.3e-11 72.8 95 47.4
Rhsim09G0192800 Rhododendron simsii HOM05D007220 ORTHO05D009058 3.0e-11 72.4 110 46.4
HanXRQChr04g0107801 Helianthus annuus HOM05D000901 ORTHO05D001160 4.0e-11 72.0 126 40.5
RcHm_v2.0_Chr1g0374911 Rosa chinensis HOM05D007220 ORTHO05D009058 4.0e-11 72.0 128 39.8
SGA_v2.0_scaffold486G52391 Striga asiatica HOM05D007220 ORTHO05D009058 4.0e-11 72.0 89 50.6
unitig_46.g18768 Utricularia gibba HOM05D007220 ORTHO05D009058 4.0e-11 72.0 97 48.5
SalBow4G2286 Salvia bowleyana HOM05D007220 ORTHO05D009058 5.2e-11 71.6 131 44.3
Actinidia25024 Actinidia chinensis HOM05D007220 ORTHO05D009058 1.2e-10 70.5 121 41.3
Duzib205G1715 Durio zibethinus HOM05D007220 ORTHO05D009058 1.2e-10 70.5 147 40.8
MD01G1184500 Malus domestica HOM05D007220 ORTHO05D009058 1.2e-10 70.5 107 39.3
CDE09G0763 Ceratophyllum demersum HOM05D007220 ORTHO05D009058 2.0e-10 69.7 85 44.7
Nitab4.5_0001548g0050 Nicotiana tabacum HOM05D007220 ORTHO05D009058 2.0e-10 69.7 83 49.4
Sabra15G0142900 Salix brachista HOM05D007220 ORTHO05D009058 2.0e-10 69.7 62 54.8
Lsat_1_v5_gn_8_9340 Lactuca sativa HOM05D007220 ORTHO05D009058 2.6e-10 69.3 100 47.0
Potri.015G129600 Populus trichocarpa HOM05D007220 ORTHO05D009058 3.4e-10 68.9 62 54.8
PGR042G1708 Punica granatum HOM05D007220 ORTHO05D009058 3.4e-10 68.9 59 62.7
Migut.F00451 Erythranthe guttata HOM05D007220 ORTHO05D009058 5.7e-10 68.2 64 57.8
AL8G25850 Arabidopsis lyrata HOM05D007220 ORTHO05D009058 7.5e-10 67.8 110 41.8
MSTRG.27183 Avicennia marina HOM05D007220 ORTHO05D009058 7.5e-10 67.8 136 40.4
Sp6g13740 Schrenkiella parvula HOM05D007220 ORTHO05D009058 7.5e-10 67.8 96 41.7
AT5G51545 Arabidopsis thaliana HOM05D007220 ORTHO05D009058 1.3e-09 67.0 125 39.2
Peaxi162Scf00241g00624 Petunia axillaris HOM05D007220 ORTHO05D009058 1.3e-09 67.0 77 51.9
Aqoxy7G00673 Aquilegia oxysepala HOM05D007220 ORTHO05D009058 1.7e-09 66.6 83 50.6
COL.COLO4_14153 Corchorus olitorius HOM05D007220 ORTHO05D009058 2.2e-09 66.2 145 40.0
SGA_v2.0_scaffold2G01175 Striga asiatica HOM05D007220 ORTHO05D009058 2.2e-09 66.2 120 43.3
CARHR264320 Cardamine hirsuta HOM05D007220 ORTHO05D009058 2.8e-09 65.9 62 53.2
Ciclev10005924m.g Citrus clementina HOM05D007220 ORTHO05D009058 2.8e-09 65.9 69 50.7
Lj8A39T34 Lonicera japonica HOM05D007220 ORTHO05D009058 2.8e-09 65.9 81 51.9
QL09p019051 Quercus lobata HOM05D007220 ORTHO05D009058 2.8e-09 65.9 60 60.0
Cpa.g.sc3.292 Carica papaya HOM05D007220 ORTHO05D009058 3.7e-09 65.5 63 52.4
Gohir.A07G038900 Gossypium hirsutum HOM05D007220 ORTHO05D009058 3.7e-09 65.5 59 57.6
Gohir.D07G043100 Gossypium hirsutum HOM05D007220 ORTHO05D009058 3.7e-09 65.5 59 57.6
Gorai.001G046100 Gossypium raimondii HOM05D007220 ORTHO05D009058 3.7e-09 65.5 59 57.6
THA.LOC104811513 Tarenaya hassleriana HOM05D007220 ORTHO05D009058 3.7e-09 65.5 147 36.1
CAN.G152.17 Capsicum annuum HOM05D007220 ORTHO05D009058 4.8e-09 65.1 61 55.7
A03p16110 Brassica napus HOM05D007220 ORTHO05D009058 6.3e-09 64.7 53 58.5
CiPaw.04G061800 Carya illinoinensis HOM05D007220 ORTHO05D009058 1.1e-08 63.9 124 37.9
Prupe.2G280700 Prunus persica HOM05D007220 ORTHO05D009058 1.1e-08 63.9 139 36.7
PGSC0003DMG400023001 Solanum tuberosum HOM05D007220 ORTHO05D009058 1.1e-08 63.9 84 46.4
CSS0026352 Camellia sinensis var. sinensis HOM05D007220 ORTHO05D009058 1.4e-08 63.5 58 56.9
ECA233G2338 Erigeron canadensis HOM05D007220 ORTHO05D009058 1.4e-08 63.5 94 42.6
Nitab4.5_0000072g0560 Nicotiana tabacum HOM05D007220 ORTHO05D009058 1.4e-08 63.5 65 55.4
Sed0003033 Sechium edule HOM05D007220 ORTHO05D009058 1.4e-08 63.5 127 38.6
MBI12_g14970_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 5.4e-08 61.6 66 56.1
Sopen03g023380 Solanum pennellii HOM05D007220 ORTHO05D009058 5.4e-08 61.6 64 53.1
MBI12_g25331_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 2.0e-07 59.7 75 48.0
Potri.012G128000 Populus trichocarpa HOM05D007220 ORTHO05D009058 2.0e-07 59.7 66 48.5
Aa31LG3G7960 Aethionema arabicum HOM05D007220 ORTHO05D009058 3.5e-07 58.9 53 50.9
PSO782G3417 Papaver somniferum HOM05D007220 ORTHO05D009058 3.5e-07 58.9 68 39.7
Atru.chr1.664 Acer truncatum HOM05D007220 ORTHO05D009058 7.7e-07 57.8 59 52.5
PSO478G4327 Papaver somniferum HOM05D007220 ORTHO05D009058 1.7e-06 56.6 68 36.8


User provided reference genes

Program Settings