Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19984_v3 Cicer arietinum L. HOM05D011725 ORTHO05D000921 4.3e-110 401.4 208 100.0
Ca_02097_v3 Cicer arietinum L. HOM05D011725 ORTHO05D000921 1.8e-87 326.2 244 75.4
Ca_18689_v3 Cicer arietinum L. HOM05D011725 ORTHO05D000921 2.6e-83 312.4 239 73.6
Medtr4g051480 Medicago truncatula HOM05D001243 ORTHO05D000843 2.3e-47 193.0 188 58.5
Medtr4g092300 Medicago truncatula HOM05D001243 ORTHO05D000843 2.3e-47 193.0 188 58.5
TPR.G16880 Trifolium pratense HOM05D000665 ORTHO05D000921 7.0e-44 181.4 188 55.3
TPR.G13935 Trifolium pratense HOM05D000665 ORTHO05D000921 1.2e-43 180.6 189 56.1
Medtr8g085310 Medicago truncatula HOM05D001243 ORTHO05D000843 8.6e-42 174.5 192 53.1
Medtr1g094760 Medicago truncatula HOM05D001243 ORTHO05D000843 2.8e-40 169.5 184 52.7
Medtr3g053640 Medicago truncatula HOM05D003171 ORTHO05D000921 1.4e-36 157.1 181 50.8
CANSAT21G0626 Cannabis sativa HOM05D000665 ORTHO05D000921 1.6e-27 127.1 204 40.2
CANSAT01G0669 Cannabis sativa HOM05D000665 ORTHO05D000921 8.7e-26 121.3 204 38.7
TPR.G32241 Trifolium pratense HOM05D000984 ORTHO05D000921 5.6e-25 118.6 185 42.7
TWI34G0686 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 1.1e-20 104.4 191 36.1
Aqoxy2G01241 Aquilegia oxysepala HOM05D003171 ORTHO05D000921 1.4e-20 104.0 180 36.1
TPR.G10504 Trifolium pratense HOM05D000665 ORTHO05D000921 1.9e-20 103.6 65 75.4
CANSAT25G2398 Cannabis sativa HOM05D000665 ORTHO05D000921 4.2e-20 102.4 194 34.5
CANSAT54G0360 Cannabis sativa HOM05D000665 ORTHO05D000921 9.3e-20 101.3 183 37.7
Dinv11570 Davidia involucrata HOM05D008473 ORTHO05D000921 1.2e-19 100.9 197 35.0
Ca_02503_v3 Cicer arietinum L. HOM05D011725 ORTHO05D000921 1.6e-19 100.5 89 66.3
TWI63G0719 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 2.1e-19 100.1 185 37.3
TWI36G0176 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 2.7e-19 99.8 191 35.6
Dinv03278 Davidia involucrata HOM05D008473 ORTHO05D000921 2.3e-18 96.7 171 35.1
TWI38G2389 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 8.7e-18 94.7 186 35.5
TWI74G1594 Tripterygium wilfordii HOM05D000196 ORTHO05D000279 1.5e-17 94.0 191 35.6
RcHm_v2.0_Chr1g0354771 Rosa chinensis HOM05D003171 ORTHO05D000921 1.9e-17 93.6 175 34.3
Medtr3g019060 Medicago truncatula HOM05D008473 ORTHO05D000921 1.6e-16 90.5 147 38.8
FAN06G0566 Fragaria x ananassa HOM05D003171 ORTHO05D000921 2.8e-16 89.7 173 32.9
Ca_14547_v3 Cicer arietinum L. HOM05D011725 ORTHO05D000921 8.1e-16 88.2 64 73.4
FAN22G1922 Fragaria x ananassa HOM05D003171 ORTHO05D000921 2.4e-15 86.7 175 32.0
Prupe.7G061200 Prunus persica HOM05D003171 ORTHO05D000921 2.4e-15 86.7 211 30.3
Hma1.2p1_1940F.1_g308350 Hydrangea macrophylla HOM05D003171 ORTHO05D000921 3.1e-15 86.3 188 29.3
Ca_02052_v3 Cicer arietinum L. HOM05D008473 ORTHO05D000921 4.0e-15 85.9 88 51.1
CSS0031995 Camellia sinensis var. sinensis HOM05D003171 ORTHO05D000921 9.0e-15 84.7 188 31.4
Atru.chr10.354 Acer truncatum HOM05D028950 ORTHO05D000921 2.0e-14 83.6 172 30.2
FAN23G0960 Fragaria x ananassa HOM05D003171 ORTHO05D000921 2.0e-14 83.6 172 31.4
Glyma.15G177200 Glycine max HOM05D003171 ORTHO05D000921 2.0e-14 83.6 189 30.2
Dinv05111 Davidia involucrata HOM05D008473 ORTHO05D000921 4.5e-14 82.4 180 33.3
Ciclev10024555m.g Citrus clementina HOM05D003171 ORTHO05D000921 1.3e-13 80.9 181 29.3
FAN26G2385 Fragaria x ananassa HOM05D003171 ORTHO05D000921 1.7e-13 80.5 191 29.3
PSO724G0339 Papaver somniferum HOM05D003171 ORTHO05D000921 3.8e-13 79.3 193 26.4
PSO170G3394 Papaver somniferum HOM05D003171 ORTHO05D000921 6.4e-13 78.6 193 26.4
PSO700G0266 Papaver somniferum HOM05D003171 ORTHO05D000921 6.4e-13 78.6 193 26.4
GSVIVG01021695001 Vitis vinifera HOM05D008473 ORTHO05D000921 2.4e-12 76.6 100 43.0
Glyma.02G173400 Glycine max HOM05D003171 ORTHO05D000921 3.2e-12 76.3 181 26.0
Lsat_1_v5_gn_5_73681 Lactuca sativa HOM05D003171 ORTHO05D000921 3.2e-12 76.3 180 26.7
Dinv20245 Davidia involucrata HOM05D008473 ORTHO05D000921 4.2e-12 75.9 226 30.5
Cfa005675 Carpinus fangiana HOM05D011725 ORTHO05D016914 5.4e-12 75.5 219 27.9
ECA246G1509 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.4e-12 75.5 189 28.0
QL09p025174 Quercus lobata HOM05D003171 ORTHO05D000921 5.4e-12 75.5 201 29.4
Ciclev10018241m.g Citrus clementina HOM05D003171 ORTHO05D000921 7.1e-12 75.1 179 29.6
Potri.017G120900 Populus trichocarpa HOM05D003171 ORTHO05D000921 9.3e-12 74.7 188 31.4
QL05p062248 Quercus lobata HOM05D003171 ORTHO05D000921 9.3e-12 74.7 201 29.4
TPR.G9865 Trifolium pratense HOM05D003171 ORTHO05D000921 9.3e-12 74.7 137 35.0
Ciclev10028960m.g Citrus clementina HOM05D003171 ORTHO05D000921 1.2e-11 74.3 180 28.9
Oeu046730.1 Olea europaea HOM05D003171 ORTHO05D000921 1.2e-11 74.3 171 32.7
QL05p040133 Quercus lobata HOM05D003171 ORTHO05D000921 1.2e-11 74.3 201 28.9
QL10p053818 Quercus lobata HOM05D003171 ORTHO05D000921 1.2e-11 74.3 201 29.4
Sabra17G0100000 Salix brachista HOM05D003171 ORTHO05D000921 1.2e-11 74.3 188 31.9
Dinv10275 Davidia involucrata HOM05D008473 ORTHO05D000921 1.6e-11 73.9 212 29.2
QL02p070399 Quercus lobata HOM05D003171 ORTHO05D000921 1.6e-11 73.9 201 29.4
QL09p032434 Quercus lobata HOM05D003171 ORTHO05D000921 1.6e-11 73.9 201 29.4
PSO832G2613 Papaver somniferum HOM05D003171 ORTHO05D000921 2.7e-11 73.2 210 25.2
QL10p052222 Quercus lobata HOM05D003171 ORTHO05D000921 2.7e-11 73.2 207 30.4
Sabra17G0103300 Salix brachista HOM05D003171 ORTHO05D000921 2.7e-11 73.2 188 31.4
Cfa007688 Carpinus fangiana HOM05D011725 ORTHO05D016914 3.5e-11 72.8 219 26.9
CSS0007117 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 6.0e-11 72.0 166 31.9
Lsat_1_v5_gn_1_68500 Lactuca sativa HOM05D003171 ORTHO05D000921 6.0e-11 72.0 187 27.8
CSS0032086 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D000921 1.0e-10 71.2 189 27.5
COL.COLO4_15155 Corchorus olitorius HOM05D003171 ORTHO05D000921 1.0e-10 71.2 186 26.3
Cfa002544 Carpinus fangiana HOM05D011725 ORTHO05D016914 1.3e-10 70.9 203 29.1
ECA233G3457 Erigeron canadensis HOM05D003171 ORTHO05D000921 1.3e-10 70.9 189 27.0
QL10p052249 Quercus lobata HOM05D003171 ORTHO05D000921 1.3e-10 70.9 208 31.2
CANSAT80G1832 Cannabis sativa HOM05D000034 ORTHO05D000921 1.8e-10 70.5 172 30.2
Cfa017593 Carpinus fangiana HOM05D011725 ORTHO05D016914 1.8e-10 70.5 215 26.5
QL10p054458 Quercus lobata HOM05D003171 ORTHO05D000921 1.8e-10 70.5 208 31.2
QL02p010900 Quercus lobata HOM05D003171 ORTHO05D000921 3.9e-10 69.3 173 31.8
CSS0006884 Camellia sinensis var. sinensis HOM05D003171 ORTHO05D000921 6.7e-10 68.6 176 30.1
CSS0048883 Camellia sinensis var. sinensis HOM05D003171 ORTHO05D000921 6.7e-10 68.6 182 28.0
QL06p033820 Quercus lobata HOM05D003171 ORTHO05D000921 6.7e-10 68.6 201 27.4
PSO384G1197 Papaver somniferum HOM05D003171 ORTHO05D000921 1.1e-09 67.8 191 25.1
Dinv11893 Davidia involucrata HOM05D007209 ORTHO05D000921 1.5e-09 67.4 190 31.1
Prupe.6G193000 Prunus persica HOM05D003171 ORTHO05D000921 1.9e-09 67.0 157 31.8
Prupe.8G117400 Prunus persica HOM05D003171 ORTHO05D000921 2.5e-09 66.6 166 26.5
TAR599G0002 Trochodendron aralioides HOM05D007209 ORTHO05D000921 2.5e-09 66.6 180 29.4
GSVIVG01038689001 Vitis vinifera HOM05D000665 ORTHO05D000921 2.5e-09 66.6 193 30.1
TAR597G0002 Trochodendron aralioides HOM05D007209 ORTHO05D000921 7.4e-09 65.1 181 29.8
Ciclev10033478m.g Citrus clementina HOM05D003171 ORTHO05D000921 9.6e-09 64.7 161 27.3
Glyma.17G029100 Glycine max HOM05D003171 ORTHO05D000921 9.6e-09 64.7 139 32.4
Hma1.2p1_1786F.1_g302300 Hydrangea macrophylla HOM05D000665 ORTHO05D000921 1.3e-08 64.3 52 55.8
Hma1.2p1_2380F.1_g320966 Hydrangea macrophylla HOM05D000665 ORTHO05D000921 1.3e-08 64.3 52 55.8
TAR080G0001 Trochodendron aralioides HOM05D000034 ORTHO05D000037 1.3e-08 64.3 205 27.3
Dinv17515 Davidia involucrata HOM05D008473 ORTHO05D000921 1.6e-08 63.9 79 41.8
Cfa019942 Carpinus fangiana HOM05D020463 ORTHO05D022255 2.1e-08 63.5 186 29.0
Dinv17018 Davidia involucrata HOM05D007209 ORTHO05D000921 2.1e-08 63.5 199 28.6
Dinv42966 Davidia involucrata HOM05D007209 ORTHO05D000921 2.1e-08 63.5 199 28.6
Dinv43133 Davidia involucrata HOM05D007209 ORTHO05D000921 2.1e-08 63.5 199 28.6
Oeu000369.1 Olea europaea HOM05D003171 ORTHO05D000921 2.1e-08 63.5 170 31.8
TWI53G0348 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 2.1e-08 63.5 151 34.4
CANSAT01G1895 Cannabis sativa HOM05D003171 ORTHO05D000921 2.8e-08 63.2 94 37.2
Nn3g16139 Nelumbo nucifera HOM05D000665 ORTHO05D000285 2.8e-08 63.2 174 29.3
Nn3g20404 Nelumbo nucifera HOM05D000665 ORTHO05D000285 2.8e-08 63.2 174 29.3
Oeu052247.2 Olea europaea HOM05D003171 ORTHO05D000921 2.8e-08 63.2 197 28.9
Actinidia03712 Actinidia chinensis HOM05D000665 ORTHO05D000921 3.7e-08 62.8 51 54.9
MD03G1270400 Malus domestica HOM05D003171 ORTHO05D000921 3.7e-08 62.8 207 26.1
Oeu059221.1 Olea europaea HOM05D003171 ORTHO05D000921 3.7e-08 62.8 197 28.9
CSS0000387 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 4.8e-08 62.4 51 54.9
CSS0008427 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 4.8e-08 62.4 51 54.9
CSS0028686 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 4.8e-08 62.4 51 54.9
Dinv29901 Davidia involucrata HOM05D007209 ORTHO05D000921 4.8e-08 62.4 188 27.7
HanXRQChr13g0396681 Helianthus annuus HOM05D000665 ORTHO05D000921 4.8e-08 62.4 196 28.6
PGR004G1433 Punica granatum HOM05D003171 ORTHO05D000921 4.8e-08 62.4 187 29.9
arahy.Tifrunner.gnm1.ann1.PZ3VRY Arachis hypogaea HOM05D000599 ORTHO05D000554 6.2e-08 62.0 175 26.9
CiPaw.08G101500 Carya illinoinensis HOM05D003171 ORTHO05D000921 6.2e-08 62.0 201 27.9
Cc01_g10760 Coffea canephora HOM05D000665 ORTHO05D000921 8.1e-08 61.6 51 54.9
Prupe.2G102600 Prunus persica HOM05D003171 ORTHO05D000921 8.1e-08 61.6 149 29.5
CSS0035449 Camellia sinensis var. sinensis HOM05D003171 ORTHO05D000921 1.1e-07 61.2 188 25.5
CANSAT11G0381 Cannabis sativa HOM05D003171 ORTHO05D000921 1.1e-07 61.2 202 26.2
Dinv42302 Davidia involucrata HOM05D007209 ORTHO05D000921 1.1e-07 61.2 199 28.6
FAN11G3401 Fragaria x ananassa HOM05D003171 ORTHO05D000921 1.1e-07 61.2 154 28.6
PGR031G3489 Punica granatum HOM05D003171 ORTHO05D000921 1.1e-07 61.2 177 28.8
FAN03G0665 Fragaria x ananassa HOM05D003171 ORTHO05D000921 1.4e-07 60.8 74 41.9
PGR042G0562 Punica granatum HOM05D003171 ORTHO05D000921 1.4e-07 60.8 187 30.5
CSS0034290 Camellia sinensis var. sinensis HOM05D008473 ORTHO05D000921 1.8e-07 60.5 164 26.2
PGR031G2473 Punica granatum HOM05D003171 ORTHO05D000921 1.8e-07 60.5 188 28.2
PGR142G3043 Punica granatum HOM05D003171 ORTHO05D000921 1.8e-07 60.5 188 28.7
CSS0039140 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 2.4e-07 60.1 51 52.9
Dinv29345 Davidia involucrata HOM05D000665 ORTHO05D000921 2.4e-07 60.1 207 27.1
PGR042G3316 Punica granatum HOM05D003171 ORTHO05D000921 2.4e-07 60.1 190 28.4
arahy.Tifrunner.gnm1.ann1.QX6E0G Arachis hypogaea HOM05D008473 ORTHO05D000921 3.1e-07 59.7 165 27.3
CANSAT35G1351 Cannabis sativa HOM05D000665 ORTHO05D000921 3.1e-07 59.7 45 53.3
QL93p0107_0126 Quercus lobata HOM05D024079 ORTHO05D000921 3.1e-07 59.7 190 28.9
Dinv10828 Davidia involucrata HOM05D008473 ORTHO05D000921 5.3e-07 58.9 201 28.9
PGR142G1768 Punica granatum HOM05D003171 ORTHO05D000921 5.3e-07 58.9 190 27.4
PGR142G2636 Punica granatum HOM05D003171 ORTHO05D000921 5.3e-07 58.9 188 28.7
Dinv11546 Davidia involucrata HOM05D007209 ORTHO05D000921 6.9e-07 58.5 187 27.3
FvH4_4g13820 Fragaria vesca HOM05D003171 ORTHO05D000921 6.9e-07 58.5 61 42.6
PGR004G0260 Punica granatum HOM05D003171 ORTHO05D000921 6.9e-07 58.5 188 28.7
Dinv07047 Davidia involucrata HOM05D000003 ORTHO05D000007 9.0e-07 58.2 198 27.8
Hma1.2p1_0471F.1_g159430 Hydrangea macrophylla HOM05D003171 ORTHO05D000921 1.2e-06 57.8 104 33.7
CANSAT54G0727 Cannabis sativa HOM05D007209 ORTHO05D000921 1.5e-06 57.4 175 25.1
COL.COLO4_13994 Corchorus olitorius HOM05D008473 ORTHO05D016003 1.5e-06 57.4 148 25.7
QL02p005994 Quercus lobata HOM05D000034 ORTHO05D000037 1.5e-06 57.4 101 37.6
CiPaw.10G123700 Carya illinoinensis HOM05D003171 ORTHO05D000921 2.0e-06 57.0 205 26.3
COL.COLO4_25265 Corchorus olitorius HOM05D007209 ORTHO05D000921 2.0e-06 57.0 203 25.1
Rhsim09G0057100 Rhododendron simsii HOM05D021294 ORTHO05D000921 2.0e-06 57.0 181 28.2
Dinv14632 Davidia involucrata HOM05D008473 ORTHO05D000921 2.6e-06 56.6 94 36.2
Dinv15889 Davidia involucrata HOM05D008473 ORTHO05D000921 2.6e-06 56.6 93 36.6
Dinv36419 Davidia involucrata HOM05D007209 ORTHO05D000921 2.6e-06 56.6 184 26.6
QL06p025400 Quercus lobata HOM05D003171 ORTHO05D000921 2.6e-06 56.6 172 32.0
CANSAT01G1528 Cannabis sativa HOM05D000665 ORTHO05D000921 3.4e-06 56.2 136 29.4
CSS0046487 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 4.5e-06 55.8 195 26.7
CANSAT21G1611 Cannabis sativa HOM05D007209 ORTHO05D000921 4.5e-06 55.8 164 28.0
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 4.5e-06 55.8 215 26.0
Dinv03816 Davidia involucrata HOM05D031496 ORTHO05D029219 4.5e-06 55.8 63 42.9
Lj6g0024631 Lotus japonicus HOM05D003171 ORTHO05D000921 4.5e-06 55.8 76 40.8
PGR031G3762 Punica granatum HOM05D003171 ORTHO05D000921 4.5e-06 55.8 187 26.7
CSS0041063 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 5.8e-06 55.5 191 27.2
Ciclev10010186m.g Citrus clementina HOM05D003171 ORTHO05D000921 5.8e-06 55.5 48 47.9
Dinv26723 Davidia involucrata HOM05D008473 ORTHO05D000921 5.8e-06 55.5 98 35.7
Dinv32769 Davidia involucrata HOM05D008473 ORTHO05D000921 5.8e-06 55.5 94 36.2
Dinv37362 Davidia involucrata HOM05D008473 ORTHO05D000921 5.8e-06 55.5 98 35.7
Dinv39796 Davidia involucrata HOM05D008473 ORTHO05D000921 5.8e-06 55.5 98 35.7
Dinv06146 Davidia involucrata HOM05D003171 ORTHO05D000921 7.6e-06 55.1 54 50.0
Dinv34380 Davidia involucrata HOM05D008473 ORTHO05D000921 7.6e-06 55.1 94 35.1
Lsat_1_v5_gn_9_41001 Lactuca sativa HOM05D003171 ORTHO05D000921 7.6e-06 55.1 171 26.3
PGR031G1431 Punica granatum HOM05D003171 ORTHO05D000921 7.6e-06 55.1 186 28.0
PGR042G0711 Punica granatum HOM05D003171 ORTHO05D000921 7.6e-06 55.1 185 26.5
Ciclev10006620m.g Citrus clementina HOM05D003171 ORTHO05D000921 9.9e-06 54.7 141 29.1
TAR628G0209 Trochodendron aralioides HOM05D015137 ORTHO05D016484 9.9e-06 54.7 181 24.9


User provided reference genes

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