Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19960_v3 Cicer arietinum L. HOM05D003420 ORTHO05D003970 4.2e-176 621.3 324 100.0
Psat7g231160 Pisum sativum HOM05D003420 ORTHO05D003970 5.4e-67 258.8 147 95.2
Glyma.01G140600 Glycine max HOM05D003420 ORTHO05D003970 9.2e-67 258.1 146 95.9
Medtr4g024570 Medicago truncatula HOM05D003420 ORTHO05D003970 9.2e-67 258.1 147 95.2
Glyma.03G026900 Glycine max HOM05D003420 ORTHO05D003970 2.1e-66 256.9 146 95.2
Lalb_Chr01g0009891 Lupinus albus HOM05D003420 ORTHO05D003970 3.9e-65 252.7 146 93.2
VMungo0331G1041 Vigna mungo HOM05D003420 ORTHO05D003970 3.9e-65 252.7 146 93.8
Phvul.010G082700 Phaseolus vulgaris HOM05D003420 ORTHO05D003970 1.5e-64 250.8 146 92.5
Lj4g0005231 Lotus japonicus HOM05D003420 ORTHO05D003970 1.9e-64 250.4 146 92.5
Cpa.g.sc88.64 Carica papaya HOM05D003420 ORTHO05D003970 4.3e-64 249.2 145 92.4
Lalb_Chr19g0129871 Lupinus albus HOM05D003420 ORTHO05D003970 7.3e-64 248.4 146 91.1
Rhsim05G0166700 Rhododendron simsii HOM05D003420 ORTHO05D003970 9.6e-64 248.1 146 90.4
Eucgr.F04156 Eucalyptus grandis HOM05D003420 ORTHO05D003970 1.2e-63 247.7 146 89.7
Peaxi162Scf00226g00925 Petunia axillaris HOM05D003420 ORTHO05D003970 1.6e-63 247.3 146 90.4
arahy.Tifrunner.gnm1.ann1.GQ31QR Arachis hypogaea HOM05D003420 ORTHO05D003970 2.8e-63 246.5 146 90.4
arahy.Tifrunner.gnm1.ann1.PV9APJ Arachis hypogaea HOM05D003420 ORTHO05D003970 2.8e-63 246.5 146 90.4
QL05p025121 Quercus lobata HOM05D003420 ORTHO05D003970 3.6e-63 246.1 146 90.4
Solyc04g072290.3 Solanum lycopersicum HOM05D003420 ORTHO05D003970 4.7e-63 245.7 146 89.7
Sopen04g028480 Solanum pennellii HOM05D003420 ORTHO05D003970 4.7e-63 245.7 146 89.7
CsaV3_6G004750 Cucumis sativus L. HOM05D003420 ORTHO05D003970 6.2e-63 245.4 146 89.7
CAN.G1010.15 Capsicum annuum HOM05D003420 ORTHO05D003970 8.1e-63 245.0 146 90.4
Nitab4.5_0001307g0060 Nicotiana tabacum HOM05D003420 ORTHO05D003970 1.1e-62 244.6 146 89.0
ClCG08G008720 Citrullus lanatus HOM05D003420 ORTHO05D003970 1.4e-62 244.2 146 89.7
Potri.019G088100 Populus trichocarpa HOM05D003420 ORTHO05D003970 1.4e-62 244.2 146 88.4
Prupe.4G277400 Prunus persica HOM05D003420 ORTHO05D003970 1.8e-62 243.8 146 87.7
QL02p034947 Quercus lobata HOM05D003420 ORTHO05D003970 1.8e-62 243.8 146 89.7
QL05p046655 Quercus lobata HOM05D003420 ORTHO05D003970 1.8e-62 243.8 146 89.7
RcHm_v2.0_Chr3g0482841 Rosa chinensis HOM05D003420 ORTHO05D003970 1.8e-62 243.8 146 89.0
SGA_v2.0_scaffold48G18027 Striga asiatica HOM05D003420 ORTHO05D003970 1.8e-62 243.8 146 89.0
Nitab4.5_0002608g0090 Nicotiana tabacum HOM05D003420 ORTHO05D003970 2.4e-62 243.4 146 88.4
CSS0045751 Camellia sinensis var. sinensis HOM05D003420 ORTHO05D003970 3.1e-62 243.0 146 88.4
Duzib187G1187 Durio zibethinus HOM05D003420 ORTHO05D003970 3.1e-62 243.0 146 89.0
Hma1.2p1_0276F.1_g111220 Hydrangea macrophylla HOM05D003420 ORTHO05D003970 3.1e-62 243.0 146 87.7
THA.LOC104800101 Tarenaya hassleriana HOM05D003420 ORTHO05D003970 3.1e-62 243.0 146 89.0
Ah.09g232700 Amaranthus hybridus HOM05D003420 ORTHO05D003970 4.0e-62 242.7 177 74.0
MD14G1071700 Malus domestica HOM05D003420 ORTHO05D003970 4.0e-62 242.7 146 87.7
CSS0008854 Camellia sinensis var. sinensis HOM05D003420 ORTHO05D003970 5.2e-62 242.3 146 87.7
HanXRQChr10g0278771 Helianthus annuus HOM05D003420 ORTHO05D003970 5.2e-62 242.3 146 87.0
Potri.013G117400 Populus trichocarpa HOM05D003420 ORTHO05D003970 5.2e-62 242.3 146 88.4
Cfa018227 Carpinus fangiana HOM05D003420 ORTHO05D003970 6.8e-62 241.9 146 89.0
Thecc.01G140700 Theobroma cacao HOM05D003420 ORTHO05D003970 6.8e-62 241.9 146 88.4
FAN02G2135 Fragaria x ananassa HOM05D003420 ORTHO05D003970 8.9e-62 241.5 146 87.7
Oeu027630.1 Olea europaea HOM05D003420 ORTHO05D003970 8.9e-62 241.5 146 87.7
PSO210G4421 Papaver somniferum HOM05D003420 ORTHO05D003970 8.9e-62 241.5 146 86.3
PSO447G0346 Papaver somniferum HOM05D003420 ORTHO05D003970 8.9e-62 241.5 146 86.3
TWI32G0430 Tripterygium wilfordii HOM05D003420 ORTHO05D003970 8.9e-62 241.5 146 89.0
GSVIVG01038535001 Vitis vinifera HOM05D003420 ORTHO05D003970 8.9e-62 241.5 146 87.0
FvH4_6g24280 Fragaria vesca HOM05D003420 ORTHO05D003970 1.2e-61 241.1 146 87.7
TAR625G1262 Trochodendron aralioides HOM05D003420 ORTHO05D003970 1.2e-61 241.1 146 86.3
CANSAT25G1859 Cannabis sativa HOM05D003420 ORTHO05D003970 1.5e-61 240.7 146 87.0
COL.COLO4_12104 Corchorus olitorius HOM05D003420 ORTHO05D003970 1.5e-61 240.7 145 89.0
FAN05G2825 Fragaria x ananassa HOM05D003420 ORTHO05D003970 1.5e-61 240.7 146 87.7
FAN14G5243 Fragaria x ananassa HOM05D003420 ORTHO05D003970 1.5e-61 240.7 146 87.7
Sed0005269 Sechium edule HOM05D003420 ORTHO05D003970 1.5e-61 240.7 146 88.4
Cc10_g06190 Coffea canephora HOM05D003420 ORTHO05D003970 2.0e-61 240.4 146 87.0
BcaC08g45755 Brassica carinata HOM05D003420 ORTHO05D003970 2.6e-61 240.0 146 87.7
A07p30580 Brassica napus HOM05D003420 ORTHO05D003970 2.6e-61 240.0 146 87.7
C06p35360 Brassica napus HOM05D003420 ORTHO05D003970 2.6e-61 240.0 146 87.7
BolC6t38641H Brassica oleracea HOM05D003420 ORTHO05D003970 2.6e-61 240.0 146 87.7
BraA07t30693Z Brassica rapa HOM05D003420 ORTHO05D003970 2.6e-61 240.0 146 87.7
Gohir.D10G107600 Gossypium hirsutum HOM05D003420 ORTHO05D003970 2.6e-61 240.0 146 87.0
Gorai.011G117900 Gossypium raimondii HOM05D003420 ORTHO05D003970 2.6e-61 240.0 146 87.0
GSVIVG01022846001 Vitis vinifera HOM05D003420 ORTHO05D003970 2.6e-61 240.0 146 86.3
AT1G71820 Arabidopsis thaliana HOM05D003420 ORTHO05D003970 4.4e-61 239.2 146 88.4
PGR102G1634 Punica granatum HOM05D003420 ORTHO05D003970 4.4e-61 239.2 146 86.3
BcaB03g15619 Brassica carinata HOM05D003420 ORTHO05D003970 5.8e-61 238.8 147 87.1
Lsat_1_v5_gn_6_100921 Lactuca sativa HOM05D003420 ORTHO05D003970 5.8e-61 238.8 146 84.9
Sabra13G0099500 Salix brachista HOM05D003420 ORTHO05D003970 5.8e-61 238.8 146 87.0
CiPaw.15G007400 Carya illinoinensis HOM05D003420 ORTHO05D003970 7.6e-61 238.4 146 87.0
Gohir.A10G068000 Gossypium hirsutum HOM05D003420 ORTHO05D003970 7.6e-61 238.4 146 86.3
Nn8g40471 Nelumbo nucifera HOM05D003420 ORTHO05D003970 9.9e-61 238.0 146 86.3
TWI32G0245 Tripterygium wilfordii HOM05D003420 ORTHO05D003970 9.9e-61 238.0 146 87.7
AL2G31400 Arabidopsis lyrata HOM05D003420 ORTHO05D003970 1.3e-60 237.7 146 87.7
Carub.0002s1858 Capsella rubella HOM05D003420 ORTHO05D003970 1.3e-60 237.7 146 87.7
CARHR290960 Cardamine hirsuta HOM05D003420 ORTHO05D003970 1.3e-60 237.7 146 87.7
Thhalv10018180m.g Eutrema salsugineum HOM05D003420 ORTHO05D003970 1.3e-60 237.7 146 87.7
Lj4C710T4 Lonicera japonica HOM05D003420 ORTHO05D003970 1.7e-60 237.3 146 85.6
Migut.C00172 Erythranthe guttata HOM05D003420 ORTHO05D003970 2.2e-60 236.9 146 86.3
Aqoxy2G01386 Aquilegia oxysepala HOM05D003420 ORTHO05D003970 2.9e-60 236.5 146 85.6
MBI05_g43692_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 3.8e-60 236.1 146 84.9
Atru.chr13.1894 Acer truncatum HOM05D003420 ORTHO05D003970 4.9e-60 235.7 146 85.6
Actinidia22448 Actinidia chinensis HOM05D003420 ORTHO05D003970 4.9e-60 235.7 146 84.9
Sp5g26850 Schrenkiella parvula HOM05D003420 ORTHO05D003970 4.9e-60 235.7 146 87.0
SpUn0020_0120 Schrenkiella parvula HOM05D003420 ORTHO05D003970 4.9e-60 235.7 146 87.0
BcaC08g46613 Brassica carinata HOM05D003420 ORTHO05D003970 6.4e-60 235.3 146 86.3
A07p37970 Brassica napus HOM05D003420 ORTHO05D003970 6.4e-60 235.3 146 86.3
C06p45890 Brassica napus HOM05D003420 ORTHO05D003970 6.4e-60 235.3 146 86.3
BolC6t39641H Brassica oleracea HOM05D003420 ORTHO05D003970 6.4e-60 235.3 146 86.3
BraA07t31362Z Brassica rapa HOM05D003420 ORTHO05D003970 6.4e-60 235.3 146 86.3
Aa31LG4G8810 Aethionema arabicum HOM05D003420 ORTHO05D003970 8.4e-60 235.0 146 87.0
ECA246G4467 Erigeron canadensis HOM05D003420 ORTHO05D003970 1.1e-59 234.6 146 83.6
unitig_46.g18008 Utricularia gibba HOM05D003420 ORTHO05D003970 1.4e-59 234.2 146 85.6
Sc02g0003530 Simmondsia chinensis HOM05D003420 ORTHO05D003970 1.9e-59 233.8 145 86.9
Manes.18G097100 Manihot esculenta HOM05D003420 ORTHO05D003970 2.4e-59 233.4 143 86.0
MSTRG.963 Avicennia marina HOM05D003420 ORTHO05D003970 5.4e-59 232.3 146 83.6
MBI05_g36592_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 9.3e-59 231.5 146 83.6
Manes.02G187400 Manihot esculenta HOM05D003420 ORTHO05D003970 9.3e-59 231.5 146 85.6
CiPaw.15G007500 Carya illinoinensis HOM05D003420 ORTHO05D003970 2.7e-58 229.9 146 84.2
Migut.C00145 Erythranthe guttata HOM05D003420 ORTHO05D003970 2.7e-58 229.9 146 82.9
ATR0815G027 Amborella trichopoda HOM05D003420 ORTHO05D003970 4.6e-58 229.2 146 80.8
Sabra19G0098400 Salix brachista HOM05D003420 ORTHO05D003970 7.8e-58 228.4 177 72.9
Oeu042182.1 Olea europaea HOM05D003420 ORTHO05D003970 1.0e-57 228.0 157 79.6
HanXRQChr10g0278751 Helianthus annuus HOM05D003420 ORTHO05D003970 1.7e-57 227.3 146 80.8
TPR.G31331 Trifolium pratense HOM05D003420 ORTHO05D003970 2.3e-57 226.9 147 86.4
Ciclev10000376m.g Citrus clementina HOM05D003420 ORTHO05D003970 3.0e-57 226.5 146 82.2
Sabra19G0101900 Salix brachista HOM05D003420 ORTHO05D003970 3.9e-57 226.1 177 72.3
HPP92_002340 Vanilla planifolia HOM05D003420 ORTHO05D003970 2.5e-56 223.4 143 82.5
Atru.chr6.1390 Acer truncatum HOM05D003420 ORTHO05D003970 5.6e-56 222.2 146 80.1
Ciclev10000395m.g Citrus clementina HOM05D003420 ORTHO05D003970 1.3e-55 221.1 146 79.5
Atru.chr7.57 Acer truncatum HOM05D003420 ORTHO05D003970 8.1e-55 218.4 146 78.1
SHI09125 Sapria himalayana HOM05D003420 ORTHO05D003970 1.4e-54 217.6 143 80.4
Actinidia15626 Actinidia chinensis HOM05D003420 ORTHO05D003970 2.9e-52 209.9 150 76.7
EL10Ac8g19742 Beta vulgaris HOM05D003420 ORTHO05D003970 1.1e-51 208.0 146 76.0
Hma1.2p1_1261F.1_g271140 Hydrangea macrophylla HOM05D003420 ORTHO05D003970 3.6e-47 193.0 115 89.6
HanXRQChr01g0002061 Helianthus annuus HOM05D003420 ORTHO05D003970 6.2e-47 192.2 148 72.3
AUR62027528 Chenopodium quinoa HOM05D003420 ORTHO05D003970 2.4e-46 190.3 142 73.9
AUR62030227 Chenopodium quinoa HOM05D003420 ORTHO05D003970 2.4e-46 190.3 142 73.9
Pp3c8_3920 Physcomitrium patens HOM05D003420 ORTHO05D003970 3.1e-46 189.9 146 68.5
GSVIVG01022862001 Vitis vinifera HOM05D003420 ORTHO05D003970 5.3e-46 189.1 116 87.1
MBI02_g44124_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 6.9e-46 188.7 145 72.4
CDE04G0884 Ceratophyllum demersum HOM05D003420 ORTHO05D003970 2.0e-45 187.2 138 73.2
Atru.chr13.1960 Acer truncatum HOM05D003420 ORTHO05D003970 5.8e-45 185.7 159 65.4
Mapoly0001s0359 Marchantia polymorpha HOM05D003420 ORTHO05D003970 2.9e-44 183.3 146 67.8
SMO298G0019 Selaginella moellendorffii HOM05D003420 ORTHO05D003970 1.4e-43 181.0 140 70.7
AagrBONN_evm.TU.Sc2ySwM_228.2748 Anthoceros agrestis HOM05D003420 ORTHO05D003970 1.0e-41 174.9 145 63.4
vmacro11080 Vaccinium macrocarpon HOM05D003420 ORTHO05D003970 5.1e-41 172.6 147 70.1
ATR0824G022 Amborella trichopoda HOM05D003420 ORTHO05D003970 6.7e-41 172.2 146 66.4
DCAR_013169 Daucus carota HOM05D003420 ORTHO05D003970 1.1e-40 171.4 146 67.8
MBI05_g36581_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 4.3e-40 169.5 146 67.1
CBR_g30506 Chara braunii HOM05D003420 ORTHO05D003970 2.2e-36 157.1 139 59.7
MBI02_g35947_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 2.9e-36 156.8 145 62.8
SGA_v2.0_scaffold24G10292 Striga asiatica HOM05D003420 ORTHO05D003970 3.8e-36 156.4 97 85.6
AagrBONN_evm.TU.Sc2ySwM_117.1499 Anthoceros agrestis HOM05D003420 ORTHO05D003970 8.4e-36 155.2 143 60.1
Actinidia06762 Actinidia chinensis HOM05D003420 ORTHO05D003970 2.5e-35 153.7 97 84.5
DCAR_009600 Daucus carota HOM05D003420 ORTHO05D003970 4.3e-32 142.9 145 59.3
Hund17515 Selenicereus undatus HOM05D003420 ORTHO05D003970 1.2e-26 124.8 100 69.0
CANSAT56G3946 Cannabis sativa HOM05D003420 ORTHO05D003970 8.2e-23 112.1 81 74.1
SEGI_15136 Sequoiadendron giganteum HOM05D003420 ORTHO05D003970 8.2e-23 112.1 89 70.8
MELO3C019945.2 Cucumis melo HOM05D003420 ORTHO05D003970 1.4e-22 111.3 103 63.1
ClCG08G008060 Citrullus lanatus HOM05D003420 ORTHO05D003970 1.0e-17 95.1 147 47.6
Os02g0749500 Oryza sativa ssp. japonica HOM05D003420 ORTHO05D003970 4.3e-16 89.7 54 87.0
RcHm_v2.0_Chr1g0335071 Rosa chinensis HOM05D003420 ORTHO05D003970 6.3e-15 85.9 58 77.6
Cre17.g744847 Chlamydomonas reinhardtii HOM05D003420 ORTHO05D003970 1.1e-11 75.1 145 34.5
Cfa000383 Carpinus fangiana HOM05D003420 ORTHO05D003970 6.1e-10 69.3 43 86.0
Haze_13390 Corylus avellana HOM05D003420 ORTHO05D003970 3.9e-09 66.6 40 87.5
PSO210G3754 Papaver somniferum HOM05D003420 ORTHO05D003970 3.9e-09 66.6 79 54.4
vmacro03706 Vaccinium macrocarpon HOM05D003420 ORTHO05D003970 1.1e-08 65.1 44 77.3
Haze_13391 Corylus avellana HOM05D003420 ORTHO05D003970 2.6e-08 63.9 43 81.4
Cfa025323 Carpinus fangiana HOM05D003420 ORTHO05D122787 9.7e-08 62.0 121 33.1
MELO3C030259.2 Cucumis melo HOM05D003420 ORTHO05D003970 1.1e-06 58.5 43 74.4
RcHm_v2.0_Chr2g0113821 Rosa chinensis HOM05D003420 ORTHO05D003970 1.4e-06 58.2 34 79.4
MCO11G044 Micromonas commoda HOM05D003420 ORTHO05D003970 9.1e-06 55.5 133 28.6


User provided reference genes

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