Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19959_v3 Cicer arietinum L. HOM05D003420 ORTHO05D003970 2.2e-188 662.1 339 100.0
Glyma.03G026900 Glycine max HOM05D003420 ORTHO05D003970 6.3e-175 617.5 337 93.8
Medtr4g024570 Medicago truncatula HOM05D003420 ORTHO05D003970 1.1e-174 616.7 337 93.8
Lalb_Chr19g0129871 Lupinus albus HOM05D003420 ORTHO05D003970 1.2e-173 613.2 337 92.3
Glyma.01G140600 Glycine max HOM05D003420 ORTHO05D003970 3.4e-173 611.7 337 92.9
Lalb_Chr01g0009891 Lupinus albus HOM05D003420 ORTHO05D003970 6.5e-172 607.4 337 92.0
Lj4g0005231 Lotus japonicus HOM05D003420 ORTHO05D003970 7.2e-171 604.0 337 91.7
Psat7g231160 Pisum sativum HOM05D003420 ORTHO05D003970 7.2e-171 604.0 337 92.9
Phvul.010G082700 Phaseolus vulgaris HOM05D003420 ORTHO05D003970 6.1e-170 600.9 337 91.4
TAR625G1262 Trochodendron aralioides HOM05D003420 ORTHO05D003970 2.3e-169 599.0 328 93.0
Atru.chr13.1894 Acer truncatum HOM05D003420 ORTHO05D003970 1.1e-168 596.7 328 91.5
Cfa018227 Carpinus fangiana HOM05D003420 ORTHO05D003970 1.3e-167 593.2 337 89.9
TWI32G0430 Tripterygium wilfordii HOM05D003420 ORTHO05D003970 1.7e-167 592.8 337 89.9
CiPaw.15G007400 Carya illinoinensis HOM05D003420 ORTHO05D003970 3.7e-167 591.7 337 90.5
PSO447G0346 Papaver somniferum HOM05D003420 ORTHO05D003970 3.7e-167 591.7 337 89.9
FAN02G2135 Fragaria x ananassa HOM05D003420 ORTHO05D003970 6.3e-167 590.9 337 88.4
Manes.18G097100 Manihot esculenta HOM05D003420 ORTHO05D003970 6.3e-167 590.9 328 91.2
PSO210G4421 Papaver somniferum HOM05D003420 ORTHO05D003970 1.4e-166 589.7 337 89.6
Potri.019G088100 Populus trichocarpa HOM05D003420 ORTHO05D003970 1.4e-166 589.7 337 89.6
FvH4_6g24280 Fragaria vesca HOM05D003420 ORTHO05D003970 1.8e-166 589.3 337 88.4
CsaV3_6G004750 Cucumis sativus L. HOM05D003420 ORTHO05D003970 2.4e-166 589.0 337 89.6
GSVIVG01038535001 Vitis vinifera HOM05D003420 ORTHO05D003970 2.4e-166 589.0 337 89.0
GSVIVG01022846001 Vitis vinifera HOM05D003420 ORTHO05D003970 3.1e-166 588.6 337 89.0
FAN14G5243 Fragaria x ananassa HOM05D003420 ORTHO05D003970 4.1e-166 588.2 337 88.4
Thecc.01G140700 Theobroma cacao HOM05D003420 ORTHO05D003970 4.1e-166 588.2 328 90.9
MD14G1071700 Malus domestica HOM05D003420 ORTHO05D003970 6.9e-166 587.4 329 90.3
RcHm_v2.0_Chr3g0482841 Rosa chinensis HOM05D003420 ORTHO05D003970 6.9e-166 587.4 337 88.1
Ciclev10000376m.g Citrus clementina HOM05D003420 ORTHO05D003970 2.6e-165 585.5 328 90.5
QL05p046655 Quercus lobata HOM05D003420 ORTHO05D003970 2.6e-165 585.5 338 88.8
PGR102G1634 Punica granatum HOM05D003420 ORTHO05D003970 4.5e-165 584.7 337 89.3
Duzib187G1187 Durio zibethinus HOM05D003420 ORTHO05D003970 5.9e-165 584.3 328 89.6
Hma1.2p1_0276F.1_g111220 Hydrangea macrophylla HOM05D003420 ORTHO05D003970 5.9e-165 584.3 337 89.0
Aqoxy2G01386 Aquilegia oxysepala HOM05D003420 ORTHO05D003970 8.5e-164 580.5 337 87.8
Sed0005269 Sechium edule HOM05D003420 ORTHO05D003970 8.5e-164 580.5 337 88.7
TPR.G31331 Trifolium pratense HOM05D003420 ORTHO05D003970 2.5e-163 578.9 375 82.1
Gorai.011G117900 Gossypium raimondii HOM05D003420 ORTHO05D003970 4.2e-163 578.2 337 87.2
arahy.Tifrunner.gnm1.ann1.GQ31QR Arachis hypogaea HOM05D003420 ORTHO05D003970 5.5e-163 577.8 328 90.2
arahy.Tifrunner.gnm1.ann1.PV9APJ Arachis hypogaea HOM05D003420 ORTHO05D003970 5.5e-163 577.8 328 90.2
Ciclev10000395m.g Citrus clementina HOM05D003420 ORTHO05D003970 5.5e-163 577.8 337 87.2
THA.LOC104800101 Tarenaya hassleriana HOM05D003420 ORTHO05D003970 5.5e-163 577.8 337 86.9
CANSAT25G1859 Cannabis sativa HOM05D003420 ORTHO05D003970 7.2e-163 577.4 337 87.2
Sc02g0003530 Simmondsia chinensis HOM05D003420 ORTHO05D003970 7.2e-163 577.4 331 88.8
CiPaw.15G007500 Carya illinoinensis HOM05D003420 ORTHO05D003970 9.4e-163 577.0 337 87.8
Thhalv10018180m.g Eutrema salsugineum HOM05D003420 ORTHO05D003970 9.4e-163 577.0 337 87.5
Gohir.A10G068000 Gossypium hirsutum HOM05D003420 ORTHO05D003970 1.2e-162 576.6 337 86.9
Gohir.D10G107600 Gossypium hirsutum HOM05D003420 ORTHO05D003970 1.6e-162 576.2 337 86.9
AT1G71820 Arabidopsis thaliana HOM05D003420 ORTHO05D003970 3.6e-162 575.1 337 87.2
AL2G31400 Arabidopsis lyrata HOM05D003420 ORTHO05D003970 6.1e-162 574.3 337 86.9
Carub.0002s1858 Capsella rubella HOM05D003420 ORTHO05D003970 6.1e-162 574.3 337 87.2
Potri.013G117400 Populus trichocarpa HOM05D003420 ORTHO05D003970 6.1e-162 574.3 328 89.0
Sp5g26850 Schrenkiella parvula HOM05D003420 ORTHO05D003970 6.1e-162 574.3 328 88.7
SpUn0020_0120 Schrenkiella parvula HOM05D003420 ORTHO05D003970 6.1e-162 574.3 328 88.7
CSS0045751 Camellia sinensis var. sinensis HOM05D003420 ORTHO05D003970 8.0e-162 573.9 337 86.4
VMungo0331G1041 Vigna mungo HOM05D003420 ORTHO05D003970 1.8e-161 572.8 313 93.0
MELO3C019945.2 Cucumis melo HOM05D003420 ORTHO05D003970 2.3e-161 572.4 374 81.0
CSS0008854 Camellia sinensis var. sinensis HOM05D003420 ORTHO05D003970 3.9e-161 571.6 337 85.8
BcaC08g46613 Brassica carinata HOM05D003420 ORTHO05D003970 8.8e-161 570.5 328 87.8
Eucgr.F04156 Eucalyptus grandis HOM05D003420 ORTHO05D003970 8.8e-161 570.5 324 89.5
BcaC08g45755 Brassica carinata HOM05D003420 ORTHO05D003970 9.7e-160 567.0 337 85.8
Manes.02G187400 Manihot esculenta HOM05D003420 ORTHO05D003970 1.7e-159 566.2 337 84.6
Atru.chr6.1390 Acer truncatum HOM05D003420 ORTHO05D003970 2.2e-159 565.8 337 84.3
Aa31LG4G8810 Aethionema arabicum HOM05D003420 ORTHO05D003970 2.2e-159 565.8 332 87.3
Sabra19G0098400 Salix brachista HOM05D003420 ORTHO05D003970 2.2e-159 565.8 362 81.5
Sabra19G0101900 Salix brachista HOM05D003420 ORTHO05D003970 2.2e-159 565.8 362 81.5
A07p30580 Brassica napus HOM05D003420 ORTHO05D003970 2.8e-159 565.5 337 85.5
BcaB03g15619 Brassica carinata HOM05D003420 ORTHO05D003970 3.7e-159 565.1 337 85.5
MBI02_g44124_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 1.1e-158 563.5 337 85.2
SGA_v2.0_scaffold48G18027 Striga asiatica HOM05D003420 ORTHO05D003970 1.1e-158 563.5 337 84.6
Sabra13G0099500 Salix brachista HOM05D003420 ORTHO05D003970 4.1e-158 561.6 343 84.8
Cc10_g06190 Coffea canephora HOM05D003420 ORTHO05D003970 1.2e-157 560.1 337 85.8
A07p37970 Brassica napus HOM05D003420 ORTHO05D003970 1.6e-157 559.7 345 83.5
C06p45890 Brassica napus HOM05D003420 ORTHO05D003970 1.6e-157 559.7 345 83.5
ClCG08G008720 Citrullus lanatus HOM05D003420 ORTHO05D003970 2.0e-157 559.3 337 86.9
Rhsim05G0166700 Rhododendron simsii HOM05D003420 ORTHO05D003970 1.3e-156 556.6 338 83.1
QL05p025121 Quercus lobata HOM05D003420 ORTHO05D003970 3.8e-156 555.1 314 89.8
BolC6t38641H Brassica oleracea HOM05D003420 ORTHO05D003970 1.5e-155 553.1 362 79.8
Migut.C00172 Erythranthe guttata HOM05D003420 ORTHO05D003970 2.5e-155 552.4 337 84.3
Peaxi162Scf00226g00925 Petunia axillaris HOM05D003420 ORTHO05D003970 2.5e-155 552.4 337 84.0
Prupe.4G277400 Prunus persica HOM05D003420 ORTHO05D003970 4.2e-155 551.6 304 90.8
Nitab4.5_0001307g0060 Nicotiana tabacum HOM05D003420 ORTHO05D003970 5.5e-155 551.2 337 84.0
Nitab4.5_0002608g0090 Nicotiana tabacum HOM05D003420 ORTHO05D003970 1.6e-154 549.7 337 83.7
MSTRG.963 Avicennia marina HOM05D003420 ORTHO05D003970 2.7e-154 548.9 337 82.5
Sopen04g028480 Solanum pennellii HOM05D003420 ORTHO05D003970 3.6e-154 548.5 337 83.7
Oeu027630.1 Olea europaea HOM05D003420 ORTHO05D003970 4.7e-154 548.1 392 74.7
CAN.G1010.15 Capsicum annuum HOM05D003420 ORTHO05D003970 8.0e-154 547.4 337 83.1
C06p35360 Brassica napus HOM05D003420 ORTHO05D003970 1.0e-153 547.0 362 79.6
Solyc04g072290.3 Solanum lycopersicum HOM05D003420 ORTHO05D003970 3.0e-153 545.4 337 83.1
ECA246G4467 Erigeron canadensis HOM05D003420 ORTHO05D003970 1.2e-152 543.5 328 83.8
Lsat_1_v5_gn_6_100921 Lactuca sativa HOM05D003420 ORTHO05D003970 1.2e-152 543.5 328 84.1
Actinidia22448 Actinidia chinensis HOM05D003420 ORTHO05D003970 1.7e-151 539.7 337 81.6
HanXRQChr10g0278771 Helianthus annuus HOM05D003420 ORTHO05D003970 6.3e-151 537.7 328 83.5
Zm00001eb254950 Zea mays HOM05D003420 ORTHO05D003970 3.1e-150 535.4 338 81.1
Actinidia15626 Actinidia chinensis HOM05D003420 ORTHO05D003970 7.0e-150 534.3 337 81.6
DCAR_013169 Daucus carota HOM05D003420 ORTHO05D003970 1.3e-148 530.0 391 73.4
BraA07t31362Z Brassica rapa HOM05D003420 ORTHO05D003970 6.5e-148 527.7 328 82.6
ATR0815G027 Amborella trichopoda HOM05D003420 ORTHO05D003970 1.2e-146 523.5 328 81.4
BraA07t30693Z Brassica rapa HOM05D003420 ORTHO05D003970 1.6e-146 523.1 337 80.4
BolC6t39641H Brassica oleracea HOM05D003420 ORTHO05D003970 4.7e-146 521.5 328 81.7
EL10Ac8g19742 Beta vulgaris HOM05D003420 ORTHO05D003970 2.3e-145 519.2 328 81.7
Hund17515 Selenicereus undatus HOM05D003420 ORTHO05D003970 1.3e-143 513.5 328 81.7
Migut.C00145 Erythranthe guttata HOM05D003420 ORTHO05D003970 2.8e-143 512.3 328 80.5
Oeu042182.1 Olea europaea HOM05D003420 ORTHO05D003970 4.1e-142 508.4 329 79.6
HanXRQChr10g0278751 Helianthus annuus HOM05D003420 ORTHO05D003970 2.7e-141 505.8 328 78.0
FAN05G2825 Fragaria x ananassa HOM05D003420 ORTHO05D003970 2.3e-140 502.7 337 78.3
MBI05_g43692_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 2.3e-140 502.7 328 78.7
vmacro11081 Vaccinium macrocarpon HOM05D003420 ORTHO05D003970 4.2e-139 498.4 347 75.8
CDE04G0884 Ceratophyllum demersum HOM05D003420 ORTHO05D003970 1.2e-138 496.9 328 79.3
QL02p034947 Quercus lobata HOM05D003420 ORTHO05D003970 1.2e-138 496.9 452 62.8
Psat4g195800 Pisum sativum HOM05D003420 ORTHO05D003970 2.8e-138 495.7 330 78.2
MBI05_g36581_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 5.4e-134 481.5 328 76.5
MBI05_g36592_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 1.6e-133 479.9 328 76.5
Ah.09g232700 Amaranthus hybridus HOM05D003420 ORTHO05D003970 2.0e-133 479.6 353 73.9
DCAR_009600 Daucus carota HOM05D003420 ORTHO05D003970 3.5e-133 478.8 328 74.4
Glyma.03G026400 Glycine max HOM05D003420 ORTHO05D003970 5.2e-129 464.9 257 91.8
Mapoly0001s0359 Marchantia polymorpha HOM05D003420 ORTHO05D003970 5.4e-126 454.9 345 68.4
SMO298G0019 Selaginella moellendorffii HOM05D003420 ORTHO05D003970 2.7e-125 452.6 337 68.8
CARHR290940 Cardamine hirsuta HOM05D003420 ORTHO05D003970 1.1e-123 447.2 243 90.9
Atru.chr13.1960 Acer truncatum HOM05D003420 ORTHO05D003970 8.0e-122 441.0 328 72.6
Pp3c8_3920 Physcomitrium patens HOM05D003420 ORTHO05D003970 3.1e-121 439.1 337 65.6
Haze_17875 Corylus avellana HOM05D003420 ORTHO05D003970 1.9e-118 429.9 280 81.8
Migut.C00173 Erythranthe guttata HOM05D003420 ORTHO05D003970 3.3e-115 419.1 338 65.7
AUR62027528 Chenopodium quinoa HOM05D003420 ORTHO05D003970 1.5e-112 410.2 258 82.9
HanXRQChr01g0002061 Helianthus annuus HOM05D003420 ORTHO05D003970 2.7e-109 399.4 339 66.1
SHI09126 Sapria himalayana HOM05D003420 ORTHO05D003970 1.0e-108 397.5 292 70.2
AUR62030227 Chenopodium quinoa HOM05D003420 ORTHO05D003970 5.6e-107 391.7 375 61.1
HPP92_002340 Vanilla planifolia HOM05D003420 ORTHO05D003970 1.2e-106 390.6 249 80.7
Cpa.g.sc66.125 Carica papaya HOM05D003420 ORTHO05D003970 2.1e-106 389.8 216 91.7
Glyma.03G026100 Glycine max HOM05D003420 ORTHO05D003970 1.2e-104 384.0 221 88.2
Glyma.03G026300 Glycine max HOM05D003420 ORTHO05D003970 7.6e-96 354.8 347 60.5
unitig_46.g18008 Utricularia gibba HOM05D003420 ORTHO05D003970 2.9e-95 352.8 335 56.7
AagrBONN_evm.TU.Sc2ySwM_228.2748 Anthoceros agrestis HOM05D003420 ORTHO05D003970 3.5e-93 345.9 343 56.0
Lj4C710G5 Lonicera japonica HOM05D003420 ORTHO05D003970 1.1e-91 340.9 218 80.3
Atru.chr7.57 Acer truncatum HOM05D003420 ORTHO05D003970 1.5e-91 340.5 337 57.9
SEGI_39176 Sequoiadendron giganteum HOM05D003420 ORTHO05D003970 6.2e-82 308.5 184 83.2
Haze_13387 Corylus avellana HOM05D003420 ORTHO05D003970 1.2e-80 304.3 164 93.9
CBR_g30506 Chara braunii HOM05D003420 ORTHO05D003970 4.3e-75 285.8 343 43.7
Nn8g40471 Nelumbo nucifera HOM05D003420 ORTHO05D003970 2.1e-69 266.9 150 90.0
RcHm_v2.0_Chr1g0335051 Rosa chinensis HOM05D003420 ORTHO05D003970 1.9e-67 260.4 140 91.4
Cc00_g30250 Coffea canephora HOM05D003420 ORTHO05D003970 1.1e-65 254.6 147 85.7
BolC6t38648H Brassica oleracea HOM05D003420 ORTHO05D003970 1.5e-64 250.8 190 70.0
CDE06G1435 Ceratophyllum demersum HOM05D003420 ORTHO05D003970 2.6e-64 250.0 140 87.9
MBI02_g35947_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 1.6e-61 240.7 167 76.6
COL.COLO4_12104 Corchorus olitorius HOM05D003420 ORTHO05D003970 2.4e-49 200.3 328 42.4
AagrBONN_evm.TU.Sc2ySwM_117.1498 Anthoceros agrestis HOM05D003420 ORTHO05D003970 1.1e-41 174.9 149 58.4
Cre17.g744847 Chlamydomonas reinhardtii HOM05D003420 ORTHO05D003970 7.7e-40 168.7 272 37.1
RcHm_v2.0_Chr1g0335041 Rosa chinensis HOM05D003420 ORTHO05D003970 5.0e-31 139.4 81 84.0
Zm00001eb194380 Zea mays HOM05D003420 ORTHO05D003970 3.6e-29 133.3 83 75.9
Sc02g0003480 Simmondsia chinensis HOM05D003420 ORTHO05D003970 6.1e-29 132.5 75 85.3
CARHR290950 Cardamine hirsuta HOM05D003420 ORTHO05D003970 3.0e-28 130.2 95 75.8
CDE06G1802 Ceratophyllum demersum HOM05D003420 ORTHO05D003970 2.2e-26 124.0 71 78.9
Actinidia22371 Actinidia chinensis HOM05D003420 ORTHO05D003970 2.7e-24 117.1 94 71.3
MBI02_g35948_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 3.3e-22 110.2 128 49.2
RcHm_v2.0_Chr1g0335061 Rosa chinensis HOM05D003420 ORTHO05D003970 6.1e-21 105.9 71 76.1
SEGI_29399 Sequoiadendron giganteum HOM05D003420 ORTHO05D003970 6.1e-21 105.9 109 54.1
AagrBONN_evm.TU.Sc2ySwM_117.1499 Anthoceros agrestis HOM05D003420 ORTHO05D003970 3.9e-15 86.7 128 46.1
MBI01_g21241_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 1.1e-14 85.1 69 65.2
MCO11G044 Micromonas commoda HOM05D003420 ORTHO05D003970 9.5e-14 82.0 417 21.3
SGA_v2.0_scaffold24G10292 Striga asiatica HOM05D003420 ORTHO05D003970 2.0e-11 74.3 69 59.4


User provided reference genes

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