Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.1e-62 243.0 120 100.0
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 6.3e-45 184.1 99 87.9
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 2.1e-40 169.1 98 79.6
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 6.7e-39 164.1 98 77.6
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 6.7e-39 164.1 91 82.4
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 2.8e-37 158.7 96 74.0
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 3.7e-37 158.3 96 74.0
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 4.8e-37 157.9 100 75.0
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 6.3e-37 157.5 97 73.2
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 8.2e-37 157.1 91 76.9
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 2.4e-36 155.6 91 72.5
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 2.0e-35 152.5 91 74.7
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 8.5e-34 147.1 104 66.3
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 1.4e-33 146.4 98 65.3
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 1.9e-33 146.0 98 67.3
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 2.5e-33 145.6 98 66.3
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 3.2e-33 145.2 98 64.3
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 5.5e-33 144.4 98 66.3
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 5.5e-33 144.4 91 71.4
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 7.2e-33 144.1 101 66.3
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 7.2e-33 144.1 98 67.3
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 1.2e-32 143.3 98 63.3
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 1.6e-32 142.9 97 69.1
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 1.6e-32 142.9 94 67.0
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 2.7e-32 142.1 101 63.4
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 2.7e-32 142.1 97 67.0
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 2.7e-32 142.1 100 69.0
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 3.6e-32 141.7 91 70.3
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 4.7e-32 141.4 100 65.0
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 4.7e-32 141.4 92 70.7
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 6.1e-32 141.0 91 65.9
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 6.1e-32 141.0 92 68.5
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 6.1e-32 141.0 98 62.2
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 6.1e-32 141.0 101 62.4
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 8.0e-32 140.6 97 63.9
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 8.0e-32 140.6 97 66.0
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 8.0e-32 140.6 91 65.9
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 1.0e-31 140.2 90 68.9
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 1.4e-31 139.8 106 61.3
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 1.4e-31 139.8 91 69.2
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 3.0e-31 138.7 100 62.0
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 3.0e-31 138.7 97 64.9
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 5.2e-31 137.9 95 65.3
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 6.7e-31 137.5 101 64.4
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 6.7e-31 137.5 98 65.3
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 6.7e-31 137.5 101 65.3
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 8.8e-31 137.1 100 62.0
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 8.8e-31 137.1 93 64.5
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 1.1e-30 136.7 91 70.3
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 1.1e-30 136.7 94 66.0
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 1.1e-30 136.7 99 63.6
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 1.1e-30 136.7 102 62.7
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 1.5e-30 136.3 93 68.8
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 1.5e-30 136.3 97 66.0
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 1.5e-30 136.3 90 66.7
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 2.0e-30 136.0 93 66.7
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 2.6e-30 135.6 100 62.0
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 2.6e-30 135.6 100 61.0
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 2.6e-30 135.6 99 62.6
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 2.6e-30 135.6 95 66.3
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 3.3e-30 135.2 89 70.8
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 3.3e-30 135.2 98 61.2
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 3.3e-30 135.2 91 61.5
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 4.4e-30 134.8 94 66.0
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 4.4e-30 134.8 91 64.8
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 4.4e-30 134.8 90 65.6
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.7e-30 134.4 90 66.7
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.7e-30 134.4 90 66.7
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 7.4e-30 134.0 92 67.4
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 7.4e-30 134.0 90 65.6
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 1.3e-29 133.3 101 61.4
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 1.3e-29 133.3 97 62.9
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 1.7e-29 132.9 102 60.8
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 2.2e-29 132.5 101 61.4
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 2.2e-29 132.5 106 62.3
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.8e-29 132.1 90 64.4
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 1.1e-28 130.2 99 63.6
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 1.4e-28 129.8 79 68.4
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 1.4e-28 129.8 79 68.4
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 1.4e-28 129.8 92 63.0
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 2.4e-28 129.0 96 64.6
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 3.1e-28 128.6 90 64.4
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 3.1e-28 128.6 90 64.4
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 5.3e-28 127.9 89 66.3
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 7.0e-28 127.5 96 62.5
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 9.1e-28 127.1 96 61.5
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 1.6e-27 126.3 89 67.4
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.6e-27 126.3 96 63.5
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 2.6e-27 125.6 102 54.9
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 3.5e-27 125.2 89 66.3
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 3.5e-27 125.2 95 60.0
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 4.5e-27 124.8 96 62.5
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 4.5e-27 124.8 96 62.5
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 4.5e-27 124.8 104 56.7
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 4.5e-27 124.8 93 55.9
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 1.0e-26 123.6 92 60.9
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 1.7e-26 122.9 96 60.4
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 2.9e-26 122.1 96 60.4
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 3.2e-25 118.6 69 69.6
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 4.2e-25 118.2 65 78.5
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 2.1e-24 115.9 81 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 2.3e-23 112.5 88 58.0
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 9.7e-22 107.1 93 50.5
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 1.3e-21 106.7 100 47.0
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 4.8e-21 104.8 67 65.7
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 6.3e-21 104.4 67 67.2
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 8.3e-21 104.0 73 67.1
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.8e-20 102.8 66 60.6
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 4.1e-20 101.7 71 63.4
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 6.5e-18 94.4 62 72.6
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.5e-18 94.4 65 60.0
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 1.9e-17 92.8 98 49.0
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 4.2e-17 91.7 94 43.6
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 6.8e-15 84.3 65 63.1
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 7.5e-14 80.9 124 40.3
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 2.9e-10 68.9 102 35.3
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 2.5e-09 65.9 74 37.8


User provided reference genes

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