Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19835_v3 Cicer arietinum L. HOM05D007090 ORTHO05D008993 3.2e-124 448.7 285 100.0
Psat7g236160 Pisum sativum HOM05D007090 ORTHO05D008993 1.6e-78 297.0 288 74.7
TPR.G4946 Trifolium pratense HOM05D007090 ORTHO05D008993 1.3e-77 293.9 291 72.5
Medtr4g026500 Medicago truncatula HOM05D007090 ORTHO05D008993 2.5e-76 289.7 294 72.8
Lj3g0011300 Lotus japonicus HOM05D007090 ORTHO05D008993 2.6e-65 253.1 292 62.0
Glyma.03G032000 Glycine max HOM05D007090 ORTHO05D008993 1.2e-62 244.2 293 64.8
Lalb_Chr12g0207911 Lupinus albus HOM05D007090 ORTHO05D008993 2.8e-59 233.0 287 56.8
VMungo0331G0297 Vigna mungo HOM05D007090 ORTHO05D008993 8.1e-59 231.5 288 60.8
Phvul.010G072500 Phaseolus vulgaris HOM05D007090 ORTHO05D008993 3.4e-57 226.1 291 60.5
arahy.Tifrunner.gnm1.ann1.UP4D5N Arachis hypogaea HOM05D007090 ORTHO05D008993 2.2e-56 223.4 262 61.5
Potri.014G060700 Populus trichocarpa HOM05D007090 ORTHO05D008993 2.2e-48 196.8 279 50.5
arahy.Tifrunner.gnm1.ann1.KQM8V4 Arachis hypogaea HOM05D007090 ORTHO05D008993 4.2e-47 192.6 257 56.8
Thecc.01G382600 Theobroma cacao HOM05D007090 ORTHO05D008993 5.5e-47 192.2 257 54.1
TAR375G0613 Trochodendron aralioides HOM05D007090 ORTHO05D008993 7.1e-47 191.8 298 45.3
Cc02_g24410 Coffea canephora HOM05D007090 ORTHO05D008993 1.2e-46 191.0 292 49.7
CiPaw.13G032600 Carya illinoinensis HOM05D007090 ORTHO05D008993 6.0e-46 188.7 288 49.0
Prupe.2G138200 Prunus persica HOM05D007090 ORTHO05D008993 2.5e-44 183.3 303 52.1
QL04p038719 Quercus lobata HOM05D007090 ORTHO05D008993 7.4e-44 181.8 263 55.1
vmacro13441 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 1.6e-43 180.6 334 37.7
Manes.05G048800 Manihot esculenta HOM05D007090 ORTHO05D008993 2.2e-43 180.3 269 56.9
HanXRQChr03g0088131 Helianthus annuus HOM05D007090 ORTHO05D008993 4.8e-43 179.1 286 49.7
Gohir.D11G083500 Gossypium hirsutum HOM05D007090 ORTHO05D008993 1.1e-42 177.9 297 51.2
CANSAT56G4322 Cannabis sativa HOM05D007090 ORTHO05D008993 2.4e-42 176.8 294 48.3
Lsat_1_v5_gn_4_45521 Lactuca sativa HOM05D007090 ORTHO05D008993 9.0e-42 174.9 296 42.2
CANSAT56G0199 Cannabis sativa HOM05D007090 ORTHO05D008993 2.6e-41 173.3 294 47.3
Haze_02682 Corylus avellana HOM05D007090 ORTHO05D008993 2.2e-40 170.2 266 51.5
Sc26g0001310 Simmondsia chinensis HOM05D007090 ORTHO05D008993 2.2e-40 170.2 288 46.5
MSTRG.4910 Avicennia marina HOM05D007090 ORTHO05D008993 3.8e-40 169.5 308 48.1
vmacro22435 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 3.8e-40 169.5 169 52.1
Eucgr.E01513 Eucalyptus grandis HOM05D007090 ORTHO05D008993 5.0e-40 169.1 299 46.2
FAN10G1641 Fragaria x ananassa HOM05D007090 ORTHO05D008993 5.0e-40 169.1 289 54.3
PGR042G2604 Punica granatum HOM05D007090 ORTHO05D008993 6.5e-40 168.7 292 41.8
RcHm_v2.0_Chr1g0349121 Rosa chinensis HOM05D007090 ORTHO05D008993 1.9e-39 167.2 291 52.9
GSVIVG01027682001 Vitis vinifera HOM05D007090 ORTHO05D008993 1.9e-39 167.2 290 42.8
Nitab4.5_0000859g0240 Nicotiana tabacum HOM05D007090 ORTHO05D008993 3.2e-39 166.4 311 38.3
COL.COLO4_12490 Corchorus olitorius HOM05D007090 ORTHO05D008993 7.2e-39 165.2 304 51.0
MD02G1210400 Malus domestica HOM05D007090 ORTHO05D008993 1.6e-38 164.1 299 48.8
Hund17045 Selenicereus undatus HOM05D007090 ORTHO05D008993 1.6e-38 164.1 267 46.4
Aqoxy5G03901 Aquilegia oxysepala HOM05D007090 ORTHO05D008993 4.6e-38 162.5 257 56.8
Migut.N01613 Erythranthe guttata HOM05D007090 ORTHO05D008993 4.6e-38 162.5 250 46.4
Duzib138G0673 Durio zibethinus HOM05D007090 ORTHO05D008993 6.1e-38 162.2 263 47.5
Actinidia22762 Actinidia chinensis HOM05D007090 ORTHO05D008993 1.4e-37 161.0 241 53.1
PSO063G1752 Papaver somniferum HOM05D007090 ORTHO05D008993 1.4e-37 161.0 280 38.2
Actinidia22817 Actinidia chinensis HOM05D007090 ORTHO05D008993 1.8e-37 160.6 279 49.8
SalBow5G5305 Salvia bowleyana HOM05D007090 ORTHO05D008993 3.0e-37 159.8 285 48.1
Sabra14G0044500 Salix brachista HOM05D007090 ORTHO05D008993 5.1e-37 159.1 289 46.4
CsaV3_6G008990 Cucumis sativus L. HOM05D007090 ORTHO05D008993 8.8e-37 158.3 288 41.0
FvH4_7g11100 Fragaria vesca HOM05D007090 ORTHO05D008993 8.8e-37 158.3 278 53.6
Thhalv10028898m.g Eutrema salsugineum HOM05D007090 ORTHO05D008993 2.5e-36 156.8 245 43.7
FAN10G4025 Fragaria x ananassa HOM05D007090 ORTHO05D008993 4.3e-36 156.0 163 56.4
CSS0011917 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 1.3e-35 154.5 193 47.2
Ciclev10021511m.g Citrus clementina HOM05D007090 ORTHO05D008993 1.7e-35 154.1 256 46.9
PSO782G4184 Papaver somniferum HOM05D007090 ORTHO05D008993 1.7e-35 154.1 301 36.9
FAN06G0781 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.4e-34 151.0 286 52.1
Nn1g01037 Nelumbo nucifera HOM05D007090 ORTHO05D008993 2.4e-34 150.2 295 42.7
ECA234G0545 Erigeron canadensis HOM05D007090 ORTHO05D008993 3.1e-34 149.8 257 46.3
Atru.chr5.252 Acer truncatum HOM05D007090 ORTHO05D008993 4.1e-34 149.4 286 49.7
Sp6g00210 Schrenkiella parvula HOM05D007090 ORTHO05D008993 4.1e-34 149.4 277 40.8
THA.LOC104803743 Tarenaya hassleriana HOM05D007090 ORTHO05D008993 1.5e-33 147.5 282 44.7
FAN01G0616 Fragaria x ananassa HOM05D007090 ORTHO05D008993 2.0e-33 147.1 346 44.8
Gorai.007G089100 Gossypium raimondii HOM05D007090 ORTHO05D008993 7.7e-33 145.2 297 47.1
Peaxi162Scf00803g00118 Petunia axillaris HOM05D007090 ORTHO05D008993 2.2e-32 143.7 169 48.5
Rhsim07G0031100 Rhododendron simsii HOM05D007090 ORTHO05D008993 2.2e-32 143.7 294 42.9
Ah.08g212650 Amaranthus hybridus HOM05D007090 ORTHO05D008993 6.5e-32 142.1 302 46.7
FAN06G2008 Fragaria x ananassa HOM05D007090 ORTHO05D008993 8.5e-32 141.7 284 51.1
AL6G53360 Arabidopsis lyrata HOM05D007090 ORTHO05D008993 1.4e-31 141.0 275 43.6
Carub.0006s3709 Capsella rubella HOM05D007090 ORTHO05D008993 5.5e-31 139.0 265 47.5
Os04g0534300 Oryza sativa ssp. japonica HOM05D007090 ORTHO05D008993 1.2e-30 137.9 281 47.7
EL10Ac1g00840 Beta vulgaris HOM05D007090 ORTHO05D008993 1.6e-30 137.5 144 53.5
Aa31LG5G170 Aethionema arabicum HOM05D007090 ORTHO05D008993 3.6e-30 136.3 294 35.4
DCAR_015886 Daucus carota HOM05D007090 ORTHO05D008993 4.7e-30 136.0 260 40.0
SGA_v2.0_scaffold11G05536 Striga asiatica HOM05D007090 ORTHO05D008993 4.7e-30 136.0 295 34.2
FAN03G3027 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.4e-29 134.4 381 39.6
BcaB01g02215 Brassica carinata HOM05D007090 ORTHO05D008993 2.3e-29 133.7 248 51.6
CAN.G1469.17 Capsicum annuum HOM05D007090 ORTHO05D008993 6.7e-29 132.1 311 39.9
Dinv44119 Davidia involucrata HOM05D007090 ORTHO05D008993 1.1e-28 131.3 264 44.3
PGSC0003DMG400025974 Solanum tuberosum HOM05D007090 ORTHO05D008993 7.4e-28 128.6 308 41.2
Sopen01g036660 Solanum pennellii HOM05D007090 ORTHO05D008993 1.7e-27 127.5 318 32.1
Hma1.2p1_0005F.1_g004490 Hydrangea macrophylla HOM05D007090 ORTHO05D008993 2.8e-27 126.7 307 43.3
unitig_748.g7116 Utricularia gibba HOM05D007090 ORTHO05D008993 2.8e-27 126.7 281 34.2
AT1G73440 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 3.7e-27 126.3 280 43.2
ATR0317G013 Amborella trichopoda HOM05D007090 ORTHO05D008993 1.4e-26 124.4 147 48.3
Nitab4.5_0008963g0010 Nicotiana tabacum HOM05D007090 ORTHO05D008993 1.8e-26 124.0 306 33.7
Solyc01g090920.3 Solanum lycopersicum HOM05D007090 ORTHO05D008993 1.8e-26 124.0 327 30.6
CARHR248180 Cardamine hirsuta HOM05D007090 ORTHO05D008993 3.1e-26 123.2 261 48.3
Eucgr.E01517 Eucalyptus grandis HOM05D007090 ORTHO05D008993 9.1e-26 121.7 79 69.6
Sed0010456 Sechium edule HOM05D007090 ORTHO05D008993 1.2e-25 121.3 245 40.0
TWI23G0238 Tripterygium wilfordii HOM05D007090 ORTHO05D008993 1.5e-25 120.9 309 33.7
Oeu051923.2 Olea europaea HOM05D007090 ORTHO05D008993 2.6e-25 120.2 275 39.3
CDE04G3442 Ceratophyllum demersum HOM05D007090 ORTHO05D008993 1.3e-24 117.9 286 35.0
CSS0004451 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 2.2e-24 117.1 165 43.0
MELO3C022245.2 Cucumis melo HOM05D007090 ORTHO05D008993 3.8e-24 116.3 278 38.5
BcaC04g24200 Brassica carinata HOM05D007090 ORTHO05D008993 2.1e-22 110.5 264 47.0
BolC9t52948H Brassica oleracea HOM05D007090 ORTHO05D008993 2.1e-22 110.5 264 46.2
A09p00730 Brassica napus HOM05D007090 ORTHO05D008993 3.6e-22 109.8 275 45.8
ClCG06G002820 Citrullus lanatus HOM05D007090 ORTHO05D008993 3.6e-22 109.8 298 31.5
C09p00130 Brassica napus HOM05D007090 ORTHO05D008993 6.1e-22 109.0 275 44.7
BraA09t35687Z Brassica rapa HOM05D007090 ORTHO05D008993 6.1e-22 109.0 275 44.7
ECA234G4391 Erigeron canadensis HOM05D007090 ORTHO05D008993 1.4e-18 97.8 162 43.8
Cpa.g.sc49.155 Carica papaya HOM05D007090 ORTHO05D008993 2.0e-17 94.0 58 65.5
Gohir.A11G078900 Gossypium hirsutum HOM05D007090 ORTHO05D008993 1.7e-16 90.9 196 47.4
Pp3c13_5390 Physcomitrium patens HOM05D007090 ORTHO05D008993 1.8e-13 80.9 152 34.9
SEGI_04858 Sequoiadendron giganteum HOM05D007090 ORTHO05D008993 2.3e-13 80.5 58 58.6
SMO137G0209 Selaginella moellendorffii HOM05D007090 ORTHO05D008993 1.8e-10 70.9 141 33.3
CBR_g23736 Chara braunii HOM05D007090 ORTHO05D008993 2.4e-10 70.5 172 30.2
Mapoly0035s0135 Marchantia polymorpha HOM05D007090 ORTHO05D008993 3.5e-09 66.6 156 32.1
AT4G00140 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 8.5e-08 62.0 43 60.5
SMO171G0115 Selaginella moellendorffii HOM05D000227 ORTHO05D004725 4.2e-07 59.7 65 44.6


User provided reference genes

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