Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19824_v3 Cicer arietinum L. HOM05D013636 ORTHO05D020442 1.2e-109 399.8 199 100.0
Ca_06601_v3 Cicer arietinum L. HOM05D013636 ORTHO05D020442 2.5e-22 109.8 89 65.2
Ca_15306_v3 Cicer arietinum L. HOM05D000676 ORTHO05D006594 1.4e-20 104.0 84 67.9
Ca_26067_v3 Cicer arietinum L. HOM05D013636 ORTHO05D147509 1.2e-19 100.9 131 51.1
Lj1g0001472 Lotus japonicus HOM05D000676 ORTHO05D006594 1.1e-17 94.4 63 73.0
Psat5g002400 Pisum sativum HOM05D000676 ORTHO05D006594 3.2e-17 92.8 149 40.9
TPR.G38493 Trifolium pratense HOM05D000676 ORTHO05D006594 9.2e-17 91.3 61 75.4
Lalb_Chr23g0265061 Lupinus albus HOM05D000676 ORTHO05D006594 1.6e-16 90.5 62 71.0
Ca_23626_v3 Cicer arietinum L. HOM05D013636 ORTHO05D020442 3.5e-16 89.4 87 59.8
Glyma.04G004600 Glycine max HOM05D000676 ORTHO05D006594 5.9e-16 88.6 83 56.6
Glyma.06G004400 Glycine max HOM05D000676 ORTHO05D006594 5.9e-16 88.6 83 56.6
Ca_19826_v3 Cicer arietinum L. HOM05D013636 ORTHO05D020442 7.8e-16 88.2 60 73.3
Medtr3g117800 Medicago truncatula HOM05D000676 ORTHO05D006594 7.8e-16 88.2 159 40.3
CAN.G588.51 Capsicum annuum HOM05D000676 ORTHO05D006594 1.7e-15 87.0 65 63.1
arahy.Tifrunner.gnm1.ann1.0G8G64 Arachis hypogaea HOM05D000676 ORTHO05D006594 3.0e-15 86.3 84 54.8
arahy.Tifrunner.gnm1.ann1.F6L1N7 Arachis hypogaea HOM05D000676 ORTHO05D006594 3.0e-15 86.3 84 54.8
Ca_25409_v3 Cicer arietinum L. HOM05D001980 ORTHO05D000224 3.0e-15 86.3 81 61.7
Solyc01g111340.4 Solanum lycopersicum HOM05D000676 ORTHO05D006594 3.0e-15 86.3 62 66.1
Sopen01g053400 Solanum pennellii HOM05D000676 ORTHO05D006594 3.0e-15 86.3 62 66.1
FAN24G2362 Fragaria x ananassa HOM05D000676 ORTHO05D006594 3.9e-15 85.9 84 53.6
VMungo1309G0317 Vigna mungo HOM05D000676 ORTHO05D006594 5.0e-15 85.5 159 37.7
FvH4_2g01510 Fragaria vesca HOM05D000676 ORTHO05D006594 6.6e-15 85.1 149 37.6
FAN15G1655 Fragaria x ananassa HOM05D000676 ORTHO05D006594 6.6e-15 85.1 149 37.6
FAN20G2205 Fragaria x ananassa HOM05D000676 ORTHO05D006594 6.6e-15 85.1 149 37.6
Phvul.009G120500 Phaseolus vulgaris HOM05D000676 ORTHO05D006594 6.6e-15 85.1 159 35.8
PGSC0003DMG400006180 Solanum tuberosum HOM05D000676 ORTHO05D006594 1.5e-14 84.0 62 64.5
MELO3C020804.2 Cucumis melo HOM05D000676 ORTHO05D006594 2.5e-14 83.2 83 51.8
RcHm_v2.0_Chr6g0244121 Rosa chinensis HOM05D000676 ORTHO05D006594 2.5e-14 83.2 84 53.6
CsaV3_2G015900 Cucumis sativus L. HOM05D000676 ORTHO05D006594 3.3e-14 82.8 83 51.8
Duzib132G1143 Durio zibethinus HOM05D000676 ORTHO05D006594 4.3e-14 82.4 84 50.0
EL10Ac9g21405 Beta vulgaris HOM05D000676 ORTHO05D006594 5.6e-14 82.0 84 50.0
CANSAT25G3525 Cannabis sativa HOM05D000676 ORTHO05D006594 5.6e-14 82.0 84 52.4
Lj5A182G116 Lonicera japonica HOM05D000676 ORTHO05D006594 5.6e-14 82.0 61 62.3
Hma1.2p1_0032F.1_g019510 Hydrangea macrophylla HOM05D000676 ORTHO05D006594 7.3e-14 81.6 84 51.2
Prupe.8G163400 Prunus persica HOM05D000676 ORTHO05D006594 7.3e-14 81.6 63 65.1
Duzib052G0273 Durio zibethinus HOM05D000676 ORTHO05D006594 9.5e-14 81.3 84 50.0
Lalb_Chr03g0025051 Lupinus albus HOM05D000676 ORTHO05D006594 9.5e-14 81.3 71 60.6
Dinv41957 Davidia involucrata HOM05D000676 ORTHO05D006594 2.1e-13 80.1 83 50.6
MD05G1119000 Malus domestica HOM05D000676 ORTHO05D006594 2.1e-13 80.1 84 52.4
MD10G1122000 Malus domestica HOM05D000676 ORTHO05D006594 2.1e-13 80.1 84 52.4
QL11p049670 Quercus lobata HOM05D000676 ORTHO05D006594 2.1e-13 80.1 84 52.4
AUR62010063 Chenopodium quinoa HOM05D000676 ORTHO05D000118 2.8e-13 79.7 84 50.0
AUR62013056 Chenopodium quinoa HOM05D000676 ORTHO05D006594 2.8e-13 79.7 84 50.0
Sed0003555 Sechium edule HOM05D000676 ORTHO05D006594 2.8e-13 79.7 83 50.6
Haze_02163 Corylus avellana HOM05D000676 ORTHO05D006594 4.7e-13 79.0 63 61.9
Thecc.02G063100 Theobroma cacao HOM05D000676 ORTHO05D006594 4.7e-13 79.0 84 48.8
CiPaw.06G123500 Carya illinoinensis HOM05D000676 ORTHO05D006594 6.2e-13 78.6 84 52.4
Lj5C182T6 Lonicera japonica HOM05D000676 ORTHO05D006594 6.2e-13 78.6 71 59.2
Peaxi162Scf00362g00845 Petunia axillaris HOM05D000676 ORTHO05D006594 6.2e-13 78.6 46 80.4
Actinidia00613 Actinidia chinensis HOM05D000676 ORTHO05D006594 8.0e-13 78.2 84 51.2
Oeu063287.2 Olea europaea HOM05D000676 ORTHO05D006594 8.0e-13 78.2 96 46.9
GSVIVG01024049001 Vitis vinifera HOM05D000676 ORTHO05D006594 8.0e-13 78.2 128 39.8
Actinidia20501 Actinidia chinensis HOM05D000676 ORTHO05D006594 1.1e-12 77.8 158 32.9
Cfa005221 Carpinus fangiana HOM05D000676 ORTHO05D006594 1.1e-12 77.8 62 61.3
Ciclev10028121m.g Citrus clementina HOM05D000676 ORTHO05D006594 1.1e-12 77.8 84 50.0
Ca_05287_v3 Cicer arietinum L. HOM05D000014 ORTHO05D000016 1.4e-12 77.4 56 73.2
Ca_20720_v3 Cicer arietinum L. HOM05D005718 ORTHO05D000016 1.4e-12 77.4 50 76.0
COL.COLO4_17306 Corchorus olitorius HOM05D000676 ORTHO05D006594 1.4e-12 77.4 84 48.8
Aqoxy6G02237 Aquilegia oxysepala HOM05D000676 ORTHO05D006594 1.8e-12 77.0 84 51.2
Peaxi162Scf01221g00031 Petunia axillaris HOM05D000676 ORTHO05D006594 1.8e-12 77.0 83 48.2
Ah.01g022820 Amaranthus hybridus HOM05D000676 ORTHO05D006594 2.3e-12 76.6 84 46.4
CSS0041825 Camellia sinensis var. sinensis HOM05D000676 ORTHO05D006594 2.3e-12 76.6 84 47.6
Eucgr.G01773 Eucalyptus grandis HOM05D000676 ORTHO05D006594 2.3e-12 76.6 84 48.8
Hund00032 Selenicereus undatus HOM05D000676 ORTHO05D006594 2.3e-12 76.6 71 53.5
Gohir.A01G166300 Gossypium hirsutum HOM05D000676 ORTHO05D006594 3.1e-12 76.3 84 46.4
Lj9A391T52 Lonicera japonica HOM05D000676 ORTHO05D006594 3.1e-12 76.3 83 48.2
Cc02_g16350 Coffea canephora HOM05D000676 ORTHO05D006594 4.0e-12 75.9 84 50.0
Gohir.D01G157500 Gossypium hirsutum HOM05D000676 ORTHO05D006594 4.0e-12 75.9 84 46.4
Gorai.002G195600 Gossypium raimondii HOM05D000676 ORTHO05D006594 4.0e-12 75.9 87 47.1
CSS0003924 Camellia sinensis var. sinensis HOM05D000676 ORTHO05D006594 5.2e-12 75.5 128 35.2
Nn5g30724 Nelumbo nucifera HOM05D000676 ORTHO05D006594 5.2e-12 75.5 84 48.8
Cc02_g16360 Coffea canephora HOM05D000676 ORTHO05D006594 6.8e-12 75.1 83 50.6
Nitab4.5_0001891g0090 Nicotiana tabacum HOM05D000676 ORTHO05D006594 8.9e-12 74.7 70 52.9
Nitab4.5_0005837g0090 Nicotiana tabacum HOM05D000676 ORTHO05D006594 8.9e-12 74.7 49 71.4
Oeu006676.1 Olea europaea HOM05D000676 ORTHO05D006594 8.9e-12 74.7 96 45.8
SGA_v2.0_scaffold80G25848 Striga asiatica HOM05D000676 ORTHO05D006594 8.9e-12 74.7 84 47.6
Dinv25264 Davidia involucrata HOM05D000676 ORTHO05D020442 1.2e-11 74.3 82 48.8
Migut.N01304 Erythranthe guttata HOM05D000676 ORTHO05D006594 1.2e-11 74.3 84 47.6
Ciclev10030219m.g Citrus clementina HOM05D000676 ORTHO05D006594 1.5e-11 73.9 84 45.2
HanXRQChr08g0224881 Helianthus annuus HOM05D000676 ORTHO05D006594 1.5e-11 73.9 59 59.3
Cpa.g.sc37.165 Carica papaya HOM05D000676 ORTHO05D006594 2.0e-11 73.6 82 48.8
MBI11_g24564_MAGBIO Magnolia biondii HOM05D000676 ORTHO05D006594 2.0e-11 73.6 84 47.6
TWI75G0740 Tripterygium wilfordii HOM05D000676 ORTHO05D006594 2.6e-11 73.2 66 59.1
ATR0810G059 Amborella trichopoda HOM05D000676 ORTHO05D006594 3.4e-11 72.8 62 58.1
PGSC0003DMG400008420 Solanum tuberosum HOM05D000676 ORTHO05D006594 3.4e-11 72.8 83 47.0
Nitab4.5_0000247g0020 Nicotiana tabacum HOM05D000676 ORTHO05D006594 4.4e-11 72.4 83 47.0
Sabra04G0115300 Salix brachista HOM05D000676 ORTHO05D006594 4.4e-11 72.4 84 47.6
Dinv41956 Davidia involucrata HOM05D000676 ORTHO05D006594 5.8e-11 72.0 71 53.5
Potri.004G173300 Populus trichocarpa HOM05D000676 ORTHO05D006594 5.8e-11 72.0 84 47.6
Nitab4.5_0006497g0010 Nicotiana tabacum HOM05D000676 ORTHO05D006594 7.5e-11 71.6 83 47.0
SalBow1G0114 Salvia bowleyana HOM05D000676 ORTHO05D006594 7.5e-11 71.6 62 56.5
Sc07g0007390 Simmondsia chinensis HOM05D000676 ORTHO05D006594 7.5e-11 71.6 179 31.3
ECA234G1289 Erigeron canadensis HOM05D000676 ORTHO05D006594 9.8e-11 71.2 83 47.0
Lsat_1_v5_gn_4_73720 Lactuca sativa HOM05D000676 ORTHO05D006594 9.8e-11 71.2 83 45.8
Rhsim11G0191100 Rhododendron simsii HOM05D000676 ORTHO05D006594 9.8e-11 71.2 85 47.1
Manes.11G095700 Manihot esculenta HOM05D000676 ORTHO05D006594 1.3e-10 70.9 84 46.4
SalBow3G0470 Salvia bowleyana HOM05D000676 ORTHO05D006594 1.3e-10 70.9 84 44.0
PGSC0003DMG400034611 Solanum tuberosum HOM05D000676 ORTHO05D006594 1.3e-10 70.9 48 72.9
PGSC0003DMG400043498 Solanum tuberosum HOM05D000676 ORTHO05D020442 1.3e-10 70.9 48 72.9
Ca_26729_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 1.7e-10 70.5 82 52.4
Solyc11g040330.2 Solanum lycopersicum HOM05D000676 ORTHO05D006594 1.7e-10 70.5 83 45.8
Sopen11g018330 Solanum pennellii HOM05D000676 ORTHO05D006594 1.7e-10 70.5 83 45.8
CDE05G0730 Ceratophyllum demersum HOM05D000676 ORTHO05D006594 2.2e-10 70.1 84 44.0
HanXRQChr08g0224871 Helianthus annuus HOM05D000676 ORTHO05D006594 2.2e-10 70.1 74 50.0
PGR042G1477 Punica granatum HOM05D000676 ORTHO05D006594 2.2e-10 70.1 84 44.0
PGR042G3875 Punica granatum HOM05D000676 ORTHO05D006594 2.2e-10 70.1 180 32.8
AT4G38650 Arabidopsis thaliana HOM05D000676 ORTHO05D006594 3.7e-10 69.3 64 60.9
unitig_899.g15608 Utricularia gibba HOM05D000676 ORTHO05D006594 3.7e-10 69.3 84 45.2
Ca_21031_v3 Cicer arietinum L. HOM05D001980 ORTHO05D000224 4.9e-10 68.9 46 73.9
Ca_23017_v3 Cicer arietinum L. HOM05D013636 ORTHO05D149311 4.9e-10 68.9 63 58.7
TAR628G0526 Trochodendron aralioides HOM05D000676 ORTHO05D006594 4.9e-10 68.9 70 48.6
AL7G10540 Arabidopsis lyrata HOM05D000676 ORTHO05D006594 6.4e-10 68.6 64 57.8
Lsat_1_v5_gn_4_73780 Lactuca sativa HOM05D000676 ORTHO05D006594 6.4e-10 68.6 59 54.2
PSO541G4121 Papaver somniferum HOM05D000676 ORTHO05D006594 6.4e-10 68.6 128 34.4
AT4G38300 Arabidopsis thaliana HOM05D000676 ORTHO05D006594 8.3e-10 68.2 73 56.2
CARHR294370 Cardamine hirsuta HOM05D000676 ORTHO05D006594 8.3e-10 68.2 66 57.6
BcaB03g12217 Brassica carinata HOM05D000676 ORTHO05D006594 1.1e-09 67.8 66 54.5
CAN.G607.2 Capsicum annuum HOM05D000676 ORTHO05D006594 1.4e-09 67.4 83 43.4
Thhalv10024805m.g Eutrema salsugineum HOM05D000676 ORTHO05D006594 1.4e-09 67.4 66 56.1
PSO675G8095 Papaver somniferum HOM05D000676 ORTHO05D006594 1.4e-09 67.4 149 31.5
Aa31LG6G16520 Aethionema arabicum HOM05D000676 ORTHO05D006594 1.9e-09 67.0 65 56.9
ECA234G1031 Erigeron canadensis HOM05D000676 ORTHO05D006594 1.9e-09 67.0 57 54.4
PSO724G1324 Papaver somniferum HOM05D000676 ORTHO05D006594 1.9e-09 67.0 84 42.9
HPP92_004982 Vanilla planifolia HOM05D000676 ORTHO05D006594 1.9e-09 67.0 84 45.2
BcaC01g00247 Brassica carinata HOM05D000676 ORTHO05D006594 3.2e-09 66.2 66 53.0
A08p24100 Brassica napus HOM05D000676 ORTHO05D006594 3.2e-09 66.2 66 53.0
C03p77210 Brassica napus HOM05D000676 ORTHO05D006594 3.2e-09 66.2 66 53.0
BolC3t19976H Brassica oleracea HOM05D000676 ORTHO05D006594 3.2e-09 66.2 66 53.0
BraA08t34365Z Brassica rapa HOM05D000676 ORTHO05D006594 3.2e-09 66.2 66 53.0
Os03g0243700 Oryza sativa ssp. japonica HOM05D000676 ORTHO05D006594 3.2e-09 66.2 84 42.9
vmacro02267 Vaccinium macrocarpon HOM05D000676 ORTHO05D006594 3.2e-09 66.2 83 43.4
Peaxi162Scf00042g02623 Petunia axillaris HOM05D000676 ORTHO05D006594 4.1e-09 65.9 62 48.4
SEGI_30822 Sequoiadendron giganteum HOM05D000676 ORTHO05D006594 4.1e-09 65.9 62 46.8
Carub.0007s0052 Capsella rubella HOM05D000676 ORTHO05D006594 5.4e-09 65.5 62 58.1
CAN.G174.9 Capsicum annuum HOM05D000676 ORTHO05D006594 5.4e-09 65.5 61 52.5
Sp7g37130 Schrenkiella parvula HOM05D000676 ORTHO05D006594 5.4e-09 65.5 65 55.4
Zm00001eb010420 Zea mays HOM05D000676 ORTHO05D006594 5.4e-09 65.5 180 30.6
THA.LOC104807819 Tarenaya hassleriana HOM05D000676 ORTHO05D006594 7.0e-09 65.1 164 31.7
DCAR_022774 Daucus carota HOM05D000676 ORTHO05D006594 9.2e-09 64.7 61 54.1
Os05g0304900 Oryza sativa ssp. japonica HOM05D000676 ORTHO05D006594 9.2e-09 64.7 65 50.8
Nitab4.5_0000956g0040 Nicotiana tabacum HOM05D000676 ORTHO05D006594 1.2e-08 64.3 63 47.6
Nitab4.5_0001889g0150 Nicotiana tabacum HOM05D000676 ORTHO05D006594 1.2e-08 64.3 63 47.6
Ca_12217_v3 Cicer arietinum L. HOM05D013636 ORTHO05D148612 1.6e-08 63.9 56 62.5
FAN27G1695 Fragaria x ananassa HOM05D000676 ORTHO05D006594 1.6e-08 63.9 135 34.1
Ca_12184_v3 Cicer arietinum L. HOM05D013636 ORTHO05D020442 3.5e-08 62.8 66 57.6
Solyc10g055370.2 Solanum lycopersicum HOM05D000676 ORTHO05D006594 6.0e-08 62.0 66 42.4
Sopen10g025150 Solanum pennellii HOM05D000676 ORTHO05D006594 6.0e-08 62.0 66 42.4
Ca_24074_v3 Cicer arietinum L. HOM05D013636 ORTHO05D147496 1.0e-07 61.2 60 60.0
SEGI_03048 Sequoiadendron giganteum HOM05D000676 ORTHO05D006594 1.0e-07 61.2 53 50.9
CAN.G1.53 Capsicum annuum HOM05D000676 ORTHO05D006594 1.3e-07 60.8 66 40.9
PGSC0003DMG400012044 Solanum tuberosum HOM05D000676 ORTHO05D006594 1.7e-07 60.5 59 47.5
Zm00001eb420100 Zea mays HOM05D000676 ORTHO05D006594 2.3e-07 60.1 66 45.5
Ca_02501_v3 Cicer arietinum L. HOM05D000014 ORTHO05D000016 1.1e-06 57.8 37 78.4
PGSC0003DMG400023204 Solanum tuberosum HOM05D000676 ORTHO05D006594 1.1e-06 57.8 63 41.3
Ca_11550_v3 Cicer arietinum L. HOM05D013636 ORTHO05D149076 1.9e-06 57.0 65 47.7
SEGI_26684 Sequoiadendron giganteum HOM05D000676 ORTHO05D006594 2.5e-06 56.6 70 42.9
SEGI_39232 Sequoiadendron giganteum HOM05D000676 ORTHO05D001458 2.5e-06 56.6 70 42.9
CAN.G606.62 Capsicum annuum HOM05D000676 ORTHO05D001458 7.3e-06 55.1 91 37.4
CAN.G606.61 Capsicum annuum HOM05D000676 ORTHO05D001458 9.5e-06 54.7 61 45.9
SMO197G0093 Selaginella moellendorffii HOM05D000676 ORTHO05D006594 9.5e-06 54.7 70 47.1


User provided reference genes

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