Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 4.0e-95 351.3 163 100.0
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 3.9e-74 281.6 163 81.0
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 1.8e-71 272.7 163 76.7
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 1.9e-68 262.7 163 74.8
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 3.6e-59 231.9 167 70.1
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 6.7e-58 227.6 159 71.1
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 2.6e-57 225.7 163 69.3
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 2.7e-51 205.7 161 65.2
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 8.8e-50 200.7 165 62.4
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 3.3e-49 198.7 165 62.4
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 1.0e-45 187.2 163 53.4
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 2.2e-45 186.0 158 55.1
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 3.8e-45 185.3 163 52.1
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 1.5e-44 183.3 148 56.8
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 2.5e-44 182.6 163 54.0
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 9.4e-44 180.6 161 53.4
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 1.2e-43 180.3 164 52.4
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 2.7e-43 179.1 166 53.6
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 6.1e-43 177.9 154 55.8
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 8.0e-43 177.6 163 52.1
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 2.3e-42 176.0 150 56.7
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 3.0e-42 175.6 143 57.3
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 3.0e-42 175.6 162 53.7
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 3.0e-42 175.6 157 52.2
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 5.2e-42 174.9 148 58.1
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.5e-41 173.3 156 54.5
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 1.5e-41 173.3 148 56.1
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 2.0e-41 172.9 154 51.9
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 3.4e-41 172.2 132 57.6
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 4.4e-41 171.8 148 54.7
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 5.7e-41 171.4 155 53.5
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.7e-40 169.9 163 52.1
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.2e-40 169.5 167 52.7
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 3.7e-40 168.7 159 52.2
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 3.7e-40 168.7 161 49.1
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 8.3e-40 167.5 162 51.2
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.4e-39 166.8 148 50.0
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 1.8e-39 166.4 161 51.6
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 4.1e-39 165.2 166 50.0
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 7.0e-39 164.5 167 49.1
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 7.0e-39 164.5 130 60.0
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 9.1e-39 164.1 162 48.1
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 9.1e-39 164.1 167 49.1
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 1.6e-38 163.3 162 50.0
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.0e-38 162.9 167 48.5
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 2.7e-38 162.5 158 51.3
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 7.7e-38 161.0 196 45.9
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 7.7e-38 161.0 150 51.3
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 1.3e-37 160.2 153 51.6
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 1.3e-37 160.2 153 51.6
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.7e-37 159.8 162 46.9
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.9e-37 159.1 164 47.0
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 5.0e-37 158.3 161 49.1
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 8.5e-37 157.5 162 46.3
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 1.9e-36 156.4 144 50.0
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 2.5e-36 156.0 155 49.0
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 3.2e-36 155.6 147 49.0
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 5.5e-36 154.8 112 59.8
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 1.6e-35 153.3 162 45.1
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 3.6e-35 152.1 160 46.9
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 3.6e-35 152.1 160 46.9
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 4.7e-35 151.8 164 43.9
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 4.7e-35 151.8 152 46.1
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 4.7e-35 151.8 134 56.0
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 4.7e-35 151.8 158 49.4
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 8.0e-35 151.0 158 45.6
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.4e-34 150.2 151 47.7
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.8e-34 149.8 149 52.3
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.3e-34 149.4 162 43.8
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 3.0e-34 149.1 160 45.6
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 5.2e-34 148.3 155 46.5
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 6.8e-34 147.9 162 46.9
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 6.8e-34 147.9 141 46.8
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 6.8e-34 147.9 144 47.9
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 8.8e-34 147.5 132 53.0
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.2e-33 147.1 145 46.9
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 1.2e-33 147.1 148 45.9
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 1.2e-33 147.1 142 47.9
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.5e-33 146.7 164 47.0
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.5e-33 146.7 163 44.2
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 2.0e-33 146.4 161 43.5
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.0e-33 146.4 164 43.3
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 2.6e-33 146.0 117 56.4
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 3.4e-33 145.6 114 57.0
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 9.8e-33 144.1 142 46.5
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 9.8e-33 144.1 153 45.1
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.3e-32 143.7 144 45.1
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 2.8e-32 142.5 166 44.6
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 3.7e-32 142.1 148 46.6
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 4.8e-32 141.7 142 45.1
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 6.3e-32 141.4 133 50.4
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 8.3e-32 141.0 148 44.6
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 1.8e-31 139.8 144 43.8
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 1.8e-31 139.8 144 43.8
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 1.8e-31 139.8 144 43.8
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 4.1e-31 138.7 163 42.9
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 4.1e-31 138.7 152 43.4
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 2.0e-30 136.3 144 44.4
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 2.0e-30 136.3 144 43.1
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 2.0e-30 136.3 144 43.1
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.0e-30 136.3 162 40.7
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 2.7e-30 136.0 164 46.3
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 2.7e-30 136.0 164 46.3
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.7e-30 136.0 122 54.9
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 3.5e-30 135.6 155 42.6
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 5.9e-30 134.8 149 42.3
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 7.7e-30 134.4 163 43.6
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 7.7e-30 134.4 160 43.1
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.0e-29 134.0 162 40.1
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 1.0e-29 134.0 139 46.8
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.3e-29 133.7 134 44.8
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-29 133.3 169 42.0
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 5.0e-29 131.7 130 45.4
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 6.6e-29 131.3 144 41.0
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 6.6e-29 131.3 144 41.0
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 8.6e-29 131.0 151 43.7
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-28 130.6 149 40.3
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 3.3e-28 129.0 144 43.1
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 3.3e-28 129.0 144 43.1
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 7.2e-28 127.9 154 40.3
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 3.6e-27 125.6 113 50.4
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 3.6e-27 125.6 144 42.4
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.6e-27 125.6 99 58.6
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 6.1e-27 124.8 143 39.2
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 8.0e-27 124.4 144 42.4
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.0e-26 124.0 94 54.3
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.4e-26 123.6 144 39.6
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 3.0e-26 122.5 87 57.5
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 3.0e-26 122.5 163 41.7
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 4.0e-26 122.1 166 41.6
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 6.8e-26 121.3 144 39.6
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 6.8e-26 121.3 121 45.5
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 8.9e-26 120.9 97 50.5
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 1.2e-25 120.6 102 52.0
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 1.5e-25 120.2 166 41.6
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 1.5e-25 120.2 129 43.4
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 3.4e-25 119.0 136 44.1
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 5.7e-25 118.2 165 40.6
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 5.7e-25 118.2 165 40.6
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 1.4e-23 113.6 135 44.4
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 3.2e-23 112.5 161 42.2
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 7.8e-22 107.8 154 35.7
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.3e-21 107.1 87 58.6
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.9e-21 105.9 163 33.7
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 6.6e-21 104.8 139 43.9
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 8.6e-21 104.4 71 56.3
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 1.1e-20 104.0 114 40.4
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 1.9e-20 103.2 77 51.9
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 5.6e-20 101.7 161 39.8
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 3.6e-19 99.0 154 37.0
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 5.2e-18 95.1 146 34.2
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 2.2e-16 89.7 64 68.8
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.4e-15 87.0 64 60.9
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 1.2e-14 84.0 132 34.1
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 9.5e-12 74.3 49 61.2
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 4.7e-11 72.0 97 37.1
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 4.7e-11 72.0 97 37.1
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 1.4e-10 70.5 141 31.2
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 5.2e-10 68.6 41 68.3
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.7e-08 63.5 57 50.9
AagrBONN_evm.TU.Sc2ySwM_344.5356__5357 Anthoceros agrestis HOM05D000233 ORTHO05D017315 2.4e-07 59.7 152 27.6
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 4.1e-07 58.9 50 56.0
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 7.1e-07 58.2 69 40.6
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 2.7e-06 56.2 63 42.9


User provided reference genes

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